BP917848 |
Clone id |
YMU001_000106_C10 |
Library |
YMU01 |
Length |
380 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000106_C10. |
Accession |
BP917848 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
AGGTGCTGAAGCTACCTTCCTCTCTCCTTGGCTTTTCTAAACTTACTCCTAACACCTCCC TCTTCCGAAGTGCAATATCTGAAGTTCCCTGGCCAGAATCGTCATACAGCGACTCAAGAT AGTAGTACTTTTCCAAGATAGCTCGGGTGCCTGGTTCAATAACGGGCTGATTCTGCAAAA TTGAAATTAATTTCTCTTGCAGATAACTTCCATCAAGAGTAAGAAACTCTTCAAAGCAAT GTCTGACAGACCAGGACAGAGACCCATAGGCACCTGCAGACGCAAAAGCAAAGGTTCCAA CCAGCTTTGGCATAAGCGGCACTCTTCCTATTAATCCACAAGCTGCGTAGAGTGTGCTGC CAGCTACTATGAAGGCTCCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9LSL9 |
Definition |
sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana |
Align length |
32 |
Score (bit) |
30.0 |
E-value |
3.7 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917848|Adiantum capillus-veneris mRNA, clone: YMU001_000106_C10. (380 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protei... 30 3.7 sp|A2T6W2|ZN449_PANTR Zinc finger protein 449 OS=Pan troglodytes... 29 6.3 sp|A1YFW6|ZN449_PANPA Zinc finger protein 449 OS=Pan paniscus GN... 29 6.3 sp|Q6P9G9|ZN449_HUMAN Zinc finger protein 449 OS=Homo sapiens GN... 29 6.3 sp|A1YEQ3|ZN449_GORGO Zinc finger protein 449 OS=Gorilla gorilla... 29 6.3 sp|A1RXA6|DNLI1_THEPD DNA ligase 1 OS=Thermofilum pendens (strai... 29 6.3 sp|Q8NVI2|ATKB_STAAW Potassium-transporting ATPase B chain OS=St... 29 6.3 sp|Q6G7N3|ATKB_STAAS Potassium-transporting ATPase B chain OS=St... 29 6.3 sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human herpesv... 29 8.2 sp|Q95XX1|PNCB_CAEEL Nicotinate phosphoribosyltransferase OS=Cae... 29 8.2 sp|Q73GG9|FABH_WOLPM 3-oxoacyl-[acyl-carrier-protein] synthase 3... 29 8.2
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1 Length = 915
Score = 30.0 bits (66), Expect = 3.7 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -3
Query: 183 QFCRISPLLNQAPELSWKSTTILSRCMTILAR 88 QFC +SPLL PE S ++ R ++IL++ Sbjct: 41 QFCSVSPLLRNLPEEESDSMSVPHRLLSILSK 72
>sp|A2T6W2|ZN449_PANTR Zinc finger protein 449 OS=Pan troglodytes GN=ZNF449 PE=3 SV=1 Length = 518
Score = 29.3 bits (64), Expect = 6.3 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Frame = +2
Query: 212 IKSKKLFKAMSDRPGQRPIG--TCRRK-SKGSNQLWHKR-HSSY*STSCVECAASYYEGS 379 ++S L++ G+RP C+++ ++ S+ + H+R HS + C+EC S+ GS Sbjct: 361 LRSSDLYRHQRLHTGERPYECTVCKKRFTRRSHLIGHQRTHSEEETYKCLECGKSFCHGS 420
>sp|A1YFW6|ZN449_PANPA Zinc finger protein 449 OS=Pan paniscus GN=ZNF449 PE=3 SV=1 Length = 518
Score = 29.3 bits (64), Expect = 6.3 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Frame = +2
Query: 212 IKSKKLFKAMSDRPGQRPIG--TCRRK-SKGSNQLWHKR-HSSY*STSCVECAASYYEGS 379 ++S L++ G+RP C+++ ++ S+ + H+R HS + C+EC S+ GS Sbjct: 361 LRSSDLYRHQRLHTGERPYECTVCKKRFTRRSHLIGHQRTHSEEETYKCLECGKSFCHGS 420
>sp|Q6P9G9|ZN449_HUMAN Zinc finger protein 449 OS=Homo sapiens GN=ZNF449 PE=2 SV=3 Length = 518
Score = 29.3 bits (64), Expect = 6.3 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Frame = +2
Query: 212 IKSKKLFKAMSDRPGQRPIG--TCRRK-SKGSNQLWHKR-HSSY*STSCVECAASYYEGS 379 ++S L++ G+RP C+++ ++ S+ + H+R HS + C+EC S+ GS Sbjct: 361 LRSSDLYRHQRLHTGERPYECTVCKKRFTRRSHLIGHQRTHSEEETYKCLECGKSFCHGS 420
>sp|A1YEQ3|ZN449_GORGO Zinc finger protein 449 OS=Gorilla gorilla gorilla GN=ZNF449 PE=3 SV=1 Length = 518
Score = 29.3 bits (64), Expect = 6.3 Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%) Frame = +2
Query: 212 IKSKKLFKAMSDRPGQRPIG--TCRRK-SKGSNQLWHKR-HSSY*STSCVECAASYYEGS 379 ++S L++ G+RP C+++ ++ S+ + H+R HS + C+EC S+ GS Sbjct: 361 LRSSDLYRHQRLHTGERPYECTVCKKRFTRRSHLIGHQRTHSEEETYKCLECGKSFCHGS 420
>sp|A1RXA6|DNLI1_THEPD DNA ligase 1 OS=Thermofilum pendens (strain Hrk 5) GN=lig1 PE=3 SV=1 Length = 531
Score = 29.3 bits (64), Expect = 6.3 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 5/79 (6%) Frame = -2
Query: 241 HCFEEFLTLD---GSYLQEKLISILQNQPV--IEPGTRAILEKYYYLESLYDDSGQGTSD 77 H F E+ + G L + + +L +P+ +EP AI E Y LE + SG+G+ + Sbjct: 49 HVFPEYDNRELGVGYSLVREALKVLDQKPLFLVEPQPPAITEVYRLLERIAGVSGEGSRE 108
Query: 76 IALRKREVLGVSLEKPRRE 20 L+ E L L + E Sbjct: 109 KKLKLLEGLFSRLSRKEVE 127
>sp|Q8NVI2|ATKB_STAAW Potassium-transporting ATPase B chain OS=Staphylococcus aureus (strain MW2) GN=kdpB PE=3 SV=1 Length = 675
Score = 29.3 bits (64), Expect = 6.3 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Frame = -2
Query: 154 PGTRAILEKYY---YLESLYDDSGQGTSDIALRKREVLGVSLEKPRREEGSFST 2 P + +LEK Y+ S+YDD+ +G S + L K+ + E P+ +G++ T Sbjct: 321 PVNQQMLEKLIVAAYMSSIYDDTPEGKSIVRLAKQMYIN---ELPKDIDGTYKT 371
>sp|Q6G7N3|ATKB_STAAS Potassium-transporting ATPase B chain OS=Staphylococcus aureus (strain MSSA476) GN=kdpB PE=3 SV=1 Length = 675
Score = 29.3 bits (64), Expect = 6.3 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%) Frame = -2
Query: 154 PGTRAILEKYY---YLESLYDDSGQGTSDIALRKREVLGVSLEKPRREEGSFST 2 P + +LEK Y+ S+YDD+ +G S + L K+ + E P+ +G++ T Sbjct: 321 PVNQQMLEKLIVAAYMSSIYDDTPEGKSIVRLAKQMYIN---ELPKDIDGTYKT 371
>sp|Q69566|U88_HHV6U Uncharacterized protein U88 OS=Human herpesvirus 6A (strain Uganda-1102) GN=U88 PE=4 SV=1 Length = 413
Score = 28.9 bits (63), Expect = 8.2 Identities = 12/20 (60%), Positives = 13/20 (65%) Frame = -1
Query: 293 LCFCVCRCLWVSVLVCQTLL 234 LC C+C CL V V VC LL Sbjct: 281 LCVCLCVCLCVCVCVCVCLL 300
>sp|Q95XX1|PNCB_CAEEL Nicotinate phosphoribosyltransferase OS=Caenorhabditis elegans GN=Y54G2A.17 PE=2 SV=2 Length = 563
Score = 28.9 bits (63), Expect = 8.2 Identities = 19/77 (24%), Positives = 37/77 (48%) Frame = -2
Query: 277 AGAYGSLSWSVRHCFEEFLTLDGSYLQEKLISILQNQPVIEPGTRAILEKYYYLESLYDD 98 +G LS +R CF + TL G Y + +SI+ + + E ++ ++ + + + Sbjct: 337 SGDLSYLSKELRECFVKVSTLKGEYKFFEKMSIVASNDINEETIMSLNDQQHEINAF--- 393
Query: 97 SGQGTSDIALRKREVLG 47 G GT + +K+ LG Sbjct: 394 -GVGTHLVTCQKQPALG 409
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7NWP8 |
Definition |
tr|A7NWP8|A7NWP8_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
82 |
Score (bit) |
42.0 |
E-value |
0.015 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917848|Adiantum capillus-veneris mRNA, clone: YMU001_000106_C10. (380 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7NWP8|A7NWP8_VITVI Chromosome chr5 scaffold_2, whole genome ... 42 0.015 tr|Q4RF76|Q4RF76_TETNG Chromosome 14 SCAF15120, whole genome sho... 39 0.17 tr|A9UVX7|A9UVX7_MONBE Predicted protein OS=Monosiga brevicollis... 37 0.37 tr|Q5YZG2|Q5YZG2_NOCFA Putative hydrolase OS=Nocardia farcinica ... 34 4.1 tr|B4GAI3|B4GAI3_DROPE GL11385 OS=Drosophila persimilis GN=GL113... 34 4.1 tr|B6R4X5|B6R4X5_9RHOB ABC-3 protein OS=Pseudovibrio sp. JE062 G... 33 5.3 tr|A9V4X3|A9V4X3_MONBE Predicted protein OS=Monosiga brevicollis... 33 5.3 tr|A9V250|A9V250_MONBE Predicted protein OS=Monosiga brevicollis... 33 5.3 tr|Q291M8|Q291M8_DROPS GA15734 OS=Drosophila pseudoobscura pseud... 33 7.0 tr|Q5QBM4|Q5QBM4_9DIPT Putative uncharacterized protein (Fragmen... 33 9.1 tr|A4D1N7|A4D1N7_HUMAN Plexin A4 OS=Homo sapiens GN=PLXNA4 PE=4 ... 33 9.1
>tr|A7NWP8|A7NWP8_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00020009001 PE=4 SV=1 Length = 244
Score = 42.0 bits (97), Expect = 0.015 Identities = 24/82 (29%), Positives = 41/82 (50%), Gaps = 2/82 (2%) Frame = -2
Query: 280 SAGAYG--SLSWSVRHCFEEFLTLDGSYLQEKLISILQNQPVIEPGTRAILEKYYYLESL 107 SA ++G S S+ C + LDGS +Q++L +I+ N+ P ++ ++Y E + Sbjct: 67 SAVSFGLWRFSRSLDSCLAHIMALDGSRMQKELATIIVNKYQDNPWRMQLISNHFYSEKV 126
Query: 106 YDDSGQGTSDIALRKREVLGVS 41 +DDS + R R G S Sbjct: 127 FDDSTSDKPKLRWRHRNFFGDS 148
>tr|Q4RF76|Q4RF76_TETNG Chromosome 14 SCAF15120, whole genome shotgun sequence OS=Tetraodon nigroviridis GN=GSTENG00035448001 PE=4 SV=1 Length = 153
Score = 38.5 bits (88), Expect = 0.17 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%) Frame = -1
Query: 344 SLWINRKSAAYAKAGWNLC--FCVCRCLWVSVLVCQTLL 234 S W+ R + GW+ C +CVC C+ V V VC++ L Sbjct: 92 SWWLQRHETCFTSGGWSCCSCWCVCVCVCVCVCVCESTL 130
>tr|A9UVX7|A9UVX7_MONBE Predicted protein OS=Monosiga brevicollis GN=24276 PE=4 SV=1 Length = 384
Score = 37.4 bits (85), Expect = 0.37 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 3/40 (7%) Frame = -1
Query: 356 HTLRSL---WINRKSAAYAKAGWNLCFCVCRCLWVSVLVC 246 HT SL W R +A AG +C CVC C+ V V VC Sbjct: 208 HTTLSLSCSWPERNTACLMTAGLEVCVCVCECVCVCVCVC 247
>tr|Q5YZG2|Q5YZG2_NOCFA Putative hydrolase OS=Nocardia farcinica GN=NFA_15830 PE=4 SV=1 Length = 290
Score = 33.9 bits (76), Expect = 4.1 Identities = 20/78 (25%), Positives = 34/78 (43%) Frame = -2
Query: 331 IGRVPLMPKLVGTFAFASAGAYGSLSWSVRHCFEEFLTLDGSYLQEKLISILQNQPVIEP 152 +G + P V FA ++ A+G+ +W R F F TL +L+++ P+ Sbjct: 109 LGFLHRYPHRVRRFALLNSRAHGTFTWPYRLLFGAFTTLASHRATRRLLTVRAMYPLHRW 168
Query: 151 GTRAILEKYYYLESLYDD 98 G R + + L DD Sbjct: 169 GLRGYVRNGSFSPGLLDD 186
>tr|B4GAI3|B4GAI3_DROPE GL11385 OS=Drosophila persimilis GN=GL11385 PE=4 SV=1 Length = 376
Score = 33.9 bits (76), Expect = 4.1 Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 18/107 (16%) Frame = -2
Query: 292 FAFASAGAYGSLSWSVRHCFEEFLTLDGSYLQEKLISILQNQP----------------- 164 FA A + G+L + + D Y + +S+ NQP Sbjct: 137 FACARSHRRGALYTLIEESGVDISYRDELYRTARDVSLQANQPNNAAEIDRYILAQAAIG 196
Query: 163 VIEPGTRAILEKYYYLESLYDDSGQGTSD-IALRKREVLGVSLEKPR 26 +EP + L+ Y ++ + D+SGQ D +A R+ E LG LEK R Sbjct: 197 QVEPFDQLALQGYDHILDIEDESGQSIGDVVATRQHEALGKFLEKLR 243
>tr|B6R4X5|B6R4X5_9RHOB ABC-3 protein OS=Pseudovibrio sp. JE062 GN=PJE062_164 PE=4 SV=1 Length = 411
Score = 33.5 bits (75), Expect = 5.3 Identities = 16/50 (32%), Positives = 32/50 (64%) Frame = -2
Query: 205 YLQEKLISILQNQPVIEPGTRAILEKYYYLESLYDDSGQGTSDIALRKRE 56 +L++ L++I N+PV+EP TR+IL + ++ + +G S+ L +R+ Sbjct: 304 HLRQGLLAIAHNEPVLEPLTRSILRRGGFMSGDGQPTVKGQSEARLIERD 353
>tr|A9V4X3|A9V4X3_MONBE Predicted protein OS=Monosiga brevicollis GN=27307 PE=4 SV=1 Length = 840
Score = 33.5 bits (75), Expect = 5.3 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = -1
Query: 335 INRKSAAYAKAGWNLCFCVCRCLWVSVLVC 246 ++R + AY N+C CVC C+ V V VC Sbjct: 110 LHRPANAYVNVNVNVCVCVCVCVCVCVCVC 139
>tr|A9V250|A9V250_MONBE Predicted protein OS=Monosiga brevicollis GN=26358 PE=3 SV=1 Length = 1395
Score = 33.5 bits (75), Expect = 5.3 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 5/50 (10%) Frame = -1
Query: 380 RSLHSSWQHTLRSLWINRKSAAYAKAG-----WNLCFCVCRCLWVSVLVC 246 R L ++ LRSL RK + +A A ++C CVC C+ V V VC Sbjct: 904 RELRMYLRNVLRSLTRERKFSMFATAADPKSLMHVCVCVCVCVCVCVCVC 953
>tr|Q291M8|Q291M8_DROPS GA15734 OS=Drosophila pseudoobscura pseudoobscura GN=GA15734 PE=4 SV=2 Length = 376
Score = 33.1 bits (74), Expect = 7.0 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 18/107 (16%) Frame = -2
Query: 292 FAFASAGAYGSLSWSVRHCFEEFLTLDGSYLQEKLISILQNQP----------------- 164 FA A + G+L + + D Y + +S+ NQP Sbjct: 137 FACARSHRRGALYTLIEESGVDISYRDELYRTARDVSLQANQPNNAAEIDRYILAQAAIG 196
Query: 163 VIEPGTRAILEKYYYLESLYDDSGQGTSD-IALRKREVLGVSLEKPR 26 +EP + L+ Y ++ + D+SGQ D +A R E LG LEK R Sbjct: 197 QVEPFDQLALQGYDHILDIEDESGQSIGDVVATRHHEALGEFLEKLR 243
>tr|Q5QBM4|Q5QBM4_9DIPT Putative uncharacterized protein (Fragment) OS=Culicoides sonorensis PE=2 SV=1 Length = 460
Score = 32.7 bits (73), Expect = 9.1 Identities = 22/75 (29%), Positives = 34/75 (45%) Frame = -2
Query: 250 SVRHCFEEFLTLDGSYLQEKLISILQNQPVIEPGTRAILEKYYYLESLYDDSGQGTSDIA 71 ++ H FEE +G+Y E L Q+ P+ K+ YL +Y + Q T ++ Sbjct: 177 AIPHLFEEKEDNEGNYPDEPLSGNCQDDPL----------KHCYLNHIYTQNYQETVEMV 226
Query: 70 LRKREVLGVSLEKPR 26 + REVL PR Sbjct: 227 YQWREVLDSYKNSPR 241
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