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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917857
Clone id YMU001_000106_D11
Library
Length 391
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000106_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAGTGGAAGAAAATAGCAGCTAAAGGCAAGCAAAAGTTGGAGGAAAGGCAAGCAAGAGAG
CACAAGTACCCCCACTAGTCCACATTGAAGACCATCTTAGAGGGAATCTCGACTACAAAG
GGAACATGAAGCTTTCGAGCTAGAAAGGGGGTTGCAAGGTGATTGTGAAGAATATTGGCA
ACCTGACCCCAAAAAGCTCCACACGTAAAAACCCTATGCCCAGACACTATATGATCCACT
GACAGGGATTGAGAATCTCTCTGGCCTTGAAGAACAAACAAGAGCACAAACAACTGCTGA
AGCCGAAGAACACAACTGATTAGGCCAAGGTAGCCACCACTGCTGGCACTACAAATGAGC
CAAGGTCTATTTCAAAAGCAATAACATTTGA
■■Homology search results ■■ -
sp_hit_id A6MMJ9
Definition sp|A6MMJ9|RPOB_DIOEL DNA-directed RNA polymerase subunit beta OS=Dioscorea elephantipes
Align length 63
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917857|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_D11.
         (391 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6MMJ9|RPOB_DIOEL DNA-directed RNA polymerase subunit beta OS...    32   1.3  
sp|Q9RFD5|BCHH_RHOS4 Magnesium-chelatase subunit H OS=Rhodobacte...    29   6.4  
sp|Q14656|TM187_HUMAN Transmembrane protein 187 OS=Homo sapiens ...    29   6.4  
sp|P0C503|RPOB_ORYSJ DNA-directed RNA polymerase subunit beta OS...    29   8.4  
sp|P0C502|RPOB_ORYSI DNA-directed RNA polymerase subunit beta OS...    29   8.4  
sp|P0C501|RPOB_ORYSA DNA-directed RNA polymerase subunit beta OS...    29   8.4  
sp|Q6ENI4|RPOB_ORYNI DNA-directed RNA polymerase subunit beta OS...    29   8.4  

>sp|A6MMJ9|RPOB_DIOEL DNA-directed RNA polymerase subunit beta
           OS=Dioscorea elephantipes GN=rpoB PE=3 SV=1
          Length = 1070

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +3

Query: 81  HIEDHLRGNLDYKGNMKLSS*KGGCKVIVKNIGNLTPKSSTRKNPMPRHYMIH-*QGLRI 257
           H+EDHL  NLD  G + L S      ++V   G LTP+++T  +  P   ++    G+++
Sbjct: 711 HLEDHLLRNLDRNGIVMLGSWIETGDILV---GKLTPQTATESSYAPEDRLLRAILGIQV 767

Query: 258 SLA 266
           S A
Sbjct: 768 STA 770


>sp|Q9RFD5|BCHH_RHOS4 Magnesium-chelatase subunit H OS=Rhodobacter
            sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM
            158) GN=bchH PE=3 SV=1
          Length = 1193

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = +2

Query: 143  ERGLQGDCEEYWQPDPKKLHT*KPYAQTLYDPLTGI 250
            ER L+     YWQPD + L   +  A  L D L GI
Sbjct: 1155 ERLLEASARNYWQPDAETLAALQGAADELEDRLEGI 1190


>sp|Q14656|TM187_HUMAN Transmembrane protein 187 OS=Homo sapiens
           GN=TMEM187 PE=2 SV=1
          Length = 261

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -3

Query: 236 DHIVSGHRVFTC--GAFWGQVANILHNHLATPFL 141
           DH ++  R+F C  G FW +V ++L  H A  FL
Sbjct: 211 DHQLARWRLFQCLTGHFWSKVCDVLQFHFAFLFL 244


>sp|P0C503|RPOB_ORYSJ DNA-directed RNA polymerase subunit beta
           OS=Oryza sativa subsp. japonica GN=rpoB PE=3 SV=1
          Length = 1075

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +3

Query: 42  GKASKRAQVPPLVHIEDHLRGNLDYKGNMKLSS*KGGCKVIVKNIGNLTPKSSTRKN 212
           G A K  +  P  H+E+HL  NLD  G +KL S      ++V   G LTP+ ++  +
Sbjct: 709 GSAEKITKEIP--HLEEHLLRNLDRNGVVKLGSWVETGDILV---GKLTPQIASESS 760


>sp|P0C502|RPOB_ORYSI DNA-directed RNA polymerase subunit beta
           OS=Oryza sativa subsp. indica GN=rpoB PE=3 SV=1
          Length = 1075

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +3

Query: 42  GKASKRAQVPPLVHIEDHLRGNLDYKGNMKLSS*KGGCKVIVKNIGNLTPKSSTRKN 212
           G A K  +  P  H+E+HL  NLD  G +KL S      ++V   G LTP+ ++  +
Sbjct: 709 GSAEKITKEIP--HLEEHLLRNLDRNGVVKLGSWVETGDILV---GKLTPQIASESS 760


>sp|P0C501|RPOB_ORYSA DNA-directed RNA polymerase subunit beta
           OS=Oryza sativa GN=rpoB PE=3 SV=1
          Length = 1075

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +3

Query: 42  GKASKRAQVPPLVHIEDHLRGNLDYKGNMKLSS*KGGCKVIVKNIGNLTPKSSTRKN 212
           G A K  +  P  H+E+HL  NLD  G +KL S      ++V   G LTP+ ++  +
Sbjct: 709 GSAEKITKEIP--HLEEHLLRNLDRNGVVKLGSWVETGDILV---GKLTPQIASESS 760


>sp|Q6ENI4|RPOB_ORYNI DNA-directed RNA polymerase subunit beta
           OS=Oryza nivara GN=rpoB PE=3 SV=1
          Length = 1075

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 20/57 (35%), Positives = 30/57 (52%)
 Frame = +3

Query: 42  GKASKRAQVPPLVHIEDHLRGNLDYKGNMKLSS*KGGCKVIVKNIGNLTPKSSTRKN 212
           G A K  +  P  H+E+HL  NLD  G +KL S      ++V   G LTP+ ++  +
Sbjct: 709 GSAEKITKEIP--HLEEHLLRNLDRNGVVKLGSWVETGDILV---GKLTPQIASESS 760
tr_hit_id Q8SX60
Definition tr|Q8SX60|Q8SX60_DROME CG30193, isoform D OS=Drosophila melanogaster
Align length 50
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917857|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_D11.
         (391 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8SX60|Q8SX60_DROME CG30193, isoform D OS=Drosophila melanoga...    34   3.2  
tr|Q7JRH2|Q7JRH2_DROME CG30193, isoform A OS=Drosophila melanoga...    34   3.2  
tr|B4I8D9|B4I8D9_DROSE GM15973 OS=Drosophila sechellia GN=GM1597...    33   7.1  
tr|B3NNY8|B3NNY8_DROER GG22816 OS=Drosophila erecta GN=GG22816 P...    33   7.1  
tr|B4QI33|B4QI33_DROSI GD11725 OS=Drosophila simulans GN=GD11725...    33   9.3  

>tr|Q8SX60|Q8SX60_DROME CG30193, isoform D OS=Drosophila
           melanogaster GN=CG30193 PE=2 SV=1
          Length = 435

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 113 LQREHEAFELERGLQG-DCEEYWQPDPKKLHT*KPYAQTLYDPLTGIENL 259
           LQ  H A EL RG    D  E W P    L + + Y +T+Y+P T  + L
Sbjct: 301 LQNSHSADELYRGQDTMDSTENWLPRASSLSSIESYTETIYEPRTETKRL 350


>tr|Q7JRH2|Q7JRH2_DROME CG30193, isoform A OS=Drosophila
           melanogaster GN=CG30190;CG30193 PE=1 SV=1
          Length = 288

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +2

Query: 113 LQREHEAFELERGLQG-DCEEYWQPDPKKLHT*KPYAQTLYDPLTGIENL 259
           LQ  H A EL RG    D  E W P    L + + Y +T+Y+P T  + L
Sbjct: 154 LQNSHSADELYRGQDTMDSTENWLPRASSLSSIESYTETIYEPRTETKRL 203


>tr|B4I8D9|B4I8D9_DROSE GM15973 OS=Drosophila sechellia GN=GM15973
           PE=4 SV=1
          Length = 288

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 113 LQREHEAFELERGLQG-DCEEYWQPDPKKLHT*KPYAQTLYDPLTGIENLSGLEEQTRAQ 289
           LQ  H A EL RG    D  + W P    L + + Y +T+Y+P T    L   E    A+
Sbjct: 154 LQNSHSADELFRGQDTMDSTDNWLPRASSLSSIESYTETIYEPRTDTRRLIIREVSEEAE 213

Query: 290 TTAE 301
              E
Sbjct: 214 LDDE 217


>tr|B3NNY8|B3NNY8_DROER GG22816 OS=Drosophila erecta GN=GG22816 PE=4
           SV=1
          Length = 285

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +2

Query: 113 LQREHEAFELERGLQG-DCEEYWQPDPKKLHT*KPYAQTLYDP 238
           LQ  H A EL RG    D  + W P    L + + YA+T+Y+P
Sbjct: 154 LQNSHSANELSRGQDVMDSTDNWLPRASSLSSIESYAETIYEP 196


>tr|B4QI33|B4QI33_DROSI GD11725 OS=Drosophila simulans GN=GD11725
           PE=4 SV=1
          Length = 153

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +2

Query: 113 LQREHEAFELERGLQG-DCEEYWQPDPKKLHT*KPYAQTLYDPLTGIENLSGLEEQTRAQ 289
           LQ  H A EL RG    D  + W P    L + + Y +T+Y+P T    L   E    A+
Sbjct: 19  LQNSHSADELFRGQDTMDSTDNWLPRASSLSSIESYTETIYEPRTETRRLIIREVSEEAE 78

Query: 290 TTAE 301
              E
Sbjct: 79  LDDE 82