BP917863
Clone id YMU001_000106_E05
Library
Length 362
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000106_E05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
TGAGAACTCAACTAGCCGACATAGAGAAACAACTCCCATCGTCATCTCATGCTCACAACT
ATAGAGAAGATGGATCGACAAAGAAGCTTCTTCAACGTTTGAAAGAGATGACGAATTTAG
TATCAGATTTTGATGTGCAATTGGTGGTTGCTAGGAAGGCAATCACAAATTCAAAGGTAT
CTCACTTTGAAGAGTTTATCAATAGTTATGATCTTGGAGATCCAATTGTTTTTGTCAAGG
AACTTCTATTAAGGAAGGGCATTATCGGGCTGGACTTCTCCGGAAATGCTATTTTCTTGG
AGCCCTATGCAATAGCCTCTTCTCATCATTCGTCAACTGAGCTACGTACGAAAGAGGAGA
AT
■■Homology search results ■■ -
sp_hit_id A8FF40
Definition sp|A8FF40|GCSPA_BACP2 Probable glycine dehydrogenase [decarboxylating] subunit 1 OS=Bacillus pumilus (strain SAFR-032)
Align length 61
Score (bit) 32.7
E-value 0.58
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917863|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_E05.
(362 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A8FF40|GCSPA_BACP2 Probable glycine dehydrogenase [decarboxyl... 33 0.58
sp|A0AVI4|TM129_HUMAN Transmembrane protein 129 OS=Homo sapiens ... 31 2.2
sp|Q07630|RDRP_PVXHB RNA replication protein OS=Potato virus X (... 30 2.9
sp|P17779|RDRP_PVXX3 RNA replication protein OS=Potato virus X (... 30 3.8
sp|P09395|RDRP_PVX RNA replication protein OS=Potato virus X PE=... 30 3.8
sp|Q5WF31|GCSPA_BACSK Probable glycine dehydrogenase [decarboxyl... 30 3.8
sp|P22591|RDRP_PVXCP RNA replication protein OS=Potato virus X (... 30 4.9
sp|O74424|NU211_SCHPO Nucleoporin nup211 OS=Schizosaccharomyces ... 30 4.9
sp|O29145|Y1120_ARCFU Uncharacterized protein AF_1120 OS=Archaeo... 29 6.4
sp|A5V605|EFG_SPHWW Elongation factor G OS=Sphingomonas wittichi... 29 8.4

>sp|A8FF40|GCSPA_BACP2 Probable glycine dehydrogenase
[decarboxylating] subunit 1 OS=Bacillus pumilus (strain
SAFR-032) GN=gcvPA PE=3 SV=1
Length = 448

Score = 32.7 bits (73), Expect = 0.58
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Frame = +3

Query: 180 SHFEEFINSYDLGDPIVFVKELLLRKGII-GLDFSGNAIFLEPYAIASSHHSSTELRTKE 356
+HF EF+ L +P+ V + LL KGII G D + L+ + + + TELRTKE
Sbjct: 381 THFNEFV--IKLQEPVQEVNKRLLEKGIIGGYDLGRDYPELQHHMLV----AVTELRTKE 434

Query: 357 E 359
E
Sbjct: 435 E 435


>sp|A0AVI4|TM129_HUMAN Transmembrane protein 129 OS=Homo sapiens
GN=TMEM129 PE=2 SV=1
Length = 362

Score = 30.8 bits (68), Expect = 2.2
Identities = 19/63 (30%), Positives = 33/63 (52%)
Frame = +3

Query: 123 SDFDVQLVVARKAITNSKVSHFEEFINSYDLGDPIVFVKELLLRKGIIGLDFSGNAIFLE 302
S+ VQL+ R A TN V F+ ++NS + G+ ++ + R + + S +FLE
Sbjct: 203 SNLPVQLLTIRVASTNPAVQAFDIWLNSTEYGELCEKLRAPIRRAAHVVIHQSLGDLFLE 262

Query: 303 PYA 311
+A
Sbjct: 263 TFA 265


>sp|Q07630|RDRP_PVXHB RNA replication protein OS=Potato virus X
(strain HB) PE=3 SV=1
Length = 1456

Score = 30.4 bits (67), Expect = 2.9
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = +3

Query: 12 LADIEKQLPSSSHAHN--YREDGSTKKLL--QRLKEMTNLVSDFDVQLVVARKAITNSKV 179
L ++++ S +H H+ + + +T +L Q+ K+ T L + D +L T+++
Sbjct: 1031 LEKFDREIHSEAHGHSNCVQTEDTTVQLFSHQQAKDETLLWATIDARLK------TSNQE 1084

Query: 180 SHFEEFINSYDLGD 221
S+F EF++ D+GD
Sbjct: 1085 SNFREFLSKRDIGD 1098


>sp|P17779|RDRP_PVXX3 RNA replication protein OS=Potato virus X
(strain X3) PE=3 SV=1
Length = 1456

Score = 30.0 bits (66), Expect = 3.8
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = +3

Query: 12 LADIEKQLPSSSHAHN--YREDGSTKKLL--QRLKEMTNLVSDFDVQLVVARKAITNSKV 179
L ++++ S SH H+ + + +T +L Q+ K+ T L + D +L T+++
Sbjct: 1031 LEKFDREIHSESHGHSNCVQTEDTTIQLFSHQQAKDETLLWATIDARLK------TSNQE 1084

Query: 180 SHFEEFINSYDLGD 221
++F EF++ D+GD
Sbjct: 1085 ANFREFLSKKDIGD 1098


>sp|P09395|RDRP_PVX RNA replication protein OS=Potato virus X PE=3
SV=1
Length = 1456

Score = 30.0 bits (66), Expect = 3.8
Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Frame = +3

Query: 12 LADIEKQLPSSSHAHN--YREDGSTKKLL--QRLKEMTNLVSDFDVQLVVARKAITNSKV 179
L ++++ S SH H+ + + +T +L Q+ K+ T L + D +L T+++
Sbjct: 1031 LEKFDREIHSESHGHSNCVQTEDTTIQLFSHQQAKDETLLWATIDARLK------TSNQE 1084

Query: 180 SHFEEFINSYDLGD 221
++F EF++ D+GD
Sbjct: 1085 TNFREFLSKKDIGD 1098


>sp|Q5WF31|GCSPA_BACSK Probable glycine dehydrogenase
[decarboxylating] subunit 1 OS=Bacillus clausii (strain
KSM-K16) GN=gcvPA PE=3 SV=1
Length = 448

Score = 30.0 bits (66), Expect = 3.8
Identities = 23/58 (39%), Positives = 29/58 (50%)
Frame = +3

Query: 186 FEEFINSYDLGDPIVFVKELLLRKGIIGLDFSGNAIFLEPYAIASSHHSSTELRTKEE 359
F EF+ + G P+ V LL KG+IG G+ +EP TELRTKEE
Sbjct: 384 FNEFV--INCGQPVKDVNRQLLEKGMIGGFDLGS---VEPERNGQMLVCVTELRTKEE 436


>sp|P22591|RDRP_PVXCP RNA replication protein OS=Potato virus X
(strain CP) PE=3 SV=1
Length = 1456

Score = 29.6 bits (65), Expect = 4.9
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 4/74 (5%)
Frame = +3

Query: 12 LADIEKQLPSSSHAHN--YREDGSTKKLL--QRLKEMTNLVSDFDVQLVVARKAITNSKV 179
L ++++ S +H H+ + + +T +L Q K+ T L + D +L T+++
Sbjct: 1031 LEKFDREIHSDAHGHSNCVQTEDTTIQLFSHQEAKDETLLWATIDARLK------TSNQE 1084

Query: 180 SHFEEFINSYDLGD 221
S+F EF++ D+GD
Sbjct: 1085 SNFREFLSKRDIGD 1098


>sp|O74424|NU211_SCHPO Nucleoporin nup211 OS=Schizosaccharomyces
pombe GN=nup211 PE=1 SV=1
Length = 1837

Score = 29.6 bits (65), Expect = 4.9
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = +3

Query: 9 QLADIEKQLPSSSHAHNYREDGSTKKLLQRLKEMTNLVSDFDVQLVVARKAITNSKVSHF 188
+L D+ P+S N E S ++ L RL+++TN + K+I+ +K F
Sbjct: 642 KLLDMAPATPNSKLNTNLIEQTSYQRSLIRLEQLTNELESL--------KSISRNKEKKF 693

Query: 189 EEFINSYDL 215
EE I+S L
Sbjct: 694 EEAISSLQL 702


>sp|O29145|Y1120_ARCFU Uncharacterized protein AF_1120
OS=Archaeoglobus fulgidus GN=AF_1120 PE=4 SV=1
Length = 170

Score = 29.3 bits (64), Expect = 6.4
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Frame = +3

Query: 99 LKEMTNLVSDFDVQLVVARKAITNSKVSHFEEF------INSYDLGDPIVFVKELLLRKG 260
++EM + SDFD V R+ + N++ +EE ++ YD I+F L R G
Sbjct: 22 MREMLGIASDFDAYNVNERRTLKNARYFGYEEMEALAEELSGYDC---IIFTAGLGSRSG 78

Query: 261 IIGLDFSG 284
+D G
Sbjct: 79 DALVDLYG 86


>sp|A5V605|EFG_SPHWW Elongation factor G OS=Sphingomonas wittichii
(strain RW1 / DSM 6014 / JCM 10273) GN=fusA PE=3 SV=1
Length = 690

Score = 28.9 bits (63), Expect = 8.4
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3

Query: 105 EMTNLVSDFDVQLVVARKAITNSKVSHFEEFINSYDLG-DPIVFVKELLLRKGIIGLDF 278
E ++ D + VAR+ + V E + SY G +P V + LLRKG + DF
Sbjct: 196 EYRDIPDDMKDEAAVARQELIELAVEQDEAAMESYLEGNEPDVATLKALLRKGTLAFDF 254


tr_hit_id Q1ENW1
Definition tr|Q1ENW1|Q1ENW1_MUSAC Putative uncharacterized protein OS=Musa acuminata
Align length 90
Score (bit) 34.3
E-value 3.2
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917863|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_E05.
(362 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q1ENW1|Q1ENW1_MUSAC Putative uncharacterized protein OS=Musa ... 34 3.2
tr|Q9CJ28|Q9CJ28_LACLA Putative uncharacterized protein ybiC OS=... 34 4.2
tr|Q9S519|Q9S519_ECOLX Putative glycosyl transferase OS=Escheric... 33 5.5
tr|B3WPH3|B3WPH3_ECOLX Glycosyl transferase, group 1 family prot... 33 5.5
tr|B3IS86|B3IS86_ECOLX Putative uncharacterized protein OS=Esche... 33 5.5
tr|A4CHS1|A4CHS1_9FLAO Putative uncharacterized protein OS=Robig... 33 5.5
tr|Q9KE57|Q9KE57_BACHD BH1001 protein OS=Bacillus halodurans GN=... 33 7.2
tr|Q8EW21|Q8EW21_MYCPE Putative uncharacterized protein MYPE3860... 33 7.2
tr|Q032R7|Q032R7_LACLS Putative uncharacterized protein OS=Lacto... 33 7.2
tr|A2RHR2|A2RHR2_LACLM Putative uncharacterized protein OS=Lacto... 33 7.2
tr|Q4CQI9|Q4CQI9_TRYCR MYH7B protein, putative OS=Trypanosoma cr... 33 7.2

>tr|Q1ENW1|Q1ENW1_MUSAC Putative uncharacterized protein OS=Musa
acuminata GN=MA4_82I11.10 PE=4 SV=1
Length = 239

Score = 34.3 bits (77), Expect = 3.2
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 11/90 (12%)
Frame = +3

Query: 54 HNYREDG-----------STKKLLQRLKEMTNLVSDFDVQLVVARKAITNSKVSHFEEFI 200
HN REDG T++ L+E++ V D+D ++ VAR + T + +H++EF
Sbjct: 129 HNRREDGVQLGLLIWPSIETRENFIALQEVS--VMDWDSEVDVARLSFTEHRKAHYDEFH 186

Query: 201 NSYDLGDPIVFVKELLLRKGIIGLDFSGNA 290
VKELL K ++ D N+
Sbjct: 187 K----------VKELLRAKSLVDEDEEDNS 206


>tr|Q9CJ28|Q9CJ28_LACLA Putative uncharacterized protein ybiC
OS=Lactococcus lactis subsp. lactis GN=ybiC PE=4 SV=1
Length = 251

Score = 33.9 bits (76), Expect = 4.2
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 12/64 (18%)
Frame = +3

Query: 54 HNYREDGSTKKLLQRLKEMTN----LVSDFDVQLV--------VARKAITNSKVSHFEEF 197
HNYRE +KL QR ++ + +V D+ + + RK + ++K+ H E++
Sbjct: 38 HNYREAFDAEKLEQRFSDVLDKYDYIVGDWGFEQLRLKGFFSTSRRKMLADNKIDHLEDY 97

Query: 198 INSY 209
+N Y
Sbjct: 98 VNEY 101


>tr|Q9S519|Q9S519_ECOLX Putative glycosyl transferase OS=Escherichia
coli GN=wbdM PE=4 SV=1
Length = 374

Score = 33.5 bits (75), Expect = 5.5
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +3

Query: 33 LPSSSHAHNYREDGSTKKLLQRLKE----MTNLVSDFDVQLVVARKAITNSKVSHFEEFI 200
+P AHN E G+ + RL + +T VS VQ +ARKA +K+ FI
Sbjct: 104 VPLICTAHNKNEGGNARMFCYRLSDFLASITTNVSKEAVQEFIARKATPKNKIVEIPNFI 163

Query: 201 NS 206
N+
Sbjct: 164 NT 165


>tr|B3WPH3|B3WPH3_ECOLX Glycosyl transferase, group 1 family protein
OS=Escherichia coli B171 GN=EcB171_0079 PE=4 SV=1
Length = 374

Score = 33.5 bits (75), Expect = 5.5
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +3

Query: 33 LPSSSHAHNYREDGSTKKLLQRLKE----MTNLVSDFDVQLVVARKAITNSKVSHFEEFI 200
+P AHN E G+ + RL + +T VS VQ +ARKA +K+ FI
Sbjct: 104 VPLICTAHNKNEGGNARMFCYRLSDFLASITTNVSKEAVQEFIARKATPKNKIVEIPNFI 163

Query: 201 NS 206
N+
Sbjct: 164 NT 165


>tr|B3IS86|B3IS86_ECOLX Putative uncharacterized protein
OS=Escherichia coli E110019 GN=EcE110019_3652 PE=4 SV=1
Length = 374

Score = 33.5 bits (75), Expect = 5.5
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = +3

Query: 33 LPSSSHAHNYREDGSTKKLLQRLKE----MTNLVSDFDVQLVVARKAITNSKVSHFEEFI 200
+P AHN E G+ + RL + +T VS VQ +ARKA +K+ FI
Sbjct: 104 VPLICTAHNKNEGGNARMFCYRLSDFLASITTNVSKEAVQEFIARKATPKNKIVEIPNFI 163

Query: 201 NS 206
N+
Sbjct: 164 NT 165


>tr|A4CHS1|A4CHS1_9FLAO Putative uncharacterized protein
OS=Robiginitalea biformata HTCC2501 GN=RB2501_06255 PE=4
SV=1
Length = 1077

Score = 33.5 bits (75), Expect = 5.5
Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 1/109 (0%)
Frame = +3

Query: 18 DIEKQLPSSSHAHNYREDGSTKKLLQRLKEMTNLVSDFDVQLVVARKAITNSKVSHFEEF 197
D+ + P + +Y G LL+ KE+ L S+ +V +I S F+
Sbjct: 768 DLINRKPQDFYIKSYNVSGLRLNLLEGYKELVQLNSNNEVGNRSTFLSIF-SNFLRFQRS 826

Query: 198 INSYDLGDPIVFVKELLLRKGIIGLDFSGNAIFLE-PYAIASSHHSSTE 341
+N+Y LG + + + LR+ I+ A+F+E P A+ + S E
Sbjct: 827 LNAYTLGTTNLSAEAIRLREAIVSAKDPERALFVEFPNALGYPNLSQEE 875


>tr|Q9KE57|Q9KE57_BACHD BH1001 protein OS=Bacillus halodurans
GN=BH1001 PE=4 SV=1
Length = 448

Score = 33.1 bits (74), Expect = 7.2
Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Frame = +3

Query: 60 YREDGST------KKLLQRLKEMTNLVSDFDVQLVVARKAITNSKVS---HFEEFINSYD 212
+ EDG T K+L Q L+E+ + DFD+ V R + SKV FEE S+D
Sbjct: 275 FEEDGETTVEEAIKELEQSLEEIEDYTMDFDLGFKVERGTLLESKVELTMSFEEDGISFD 334

Query: 213 LG 218
+G
Sbjct: 335 VG 336


>tr|Q8EW21|Q8EW21_MYCPE Putative uncharacterized protein MYPE3860
OS=Mycoplasma penetrans GN=MYPE3860 PE=4 SV=1
Length = 1378

Score = 33.1 bits (74), Expect = 7.2
Identities = 20/73 (27%), Positives = 36/73 (49%)
Frame = +3

Query: 27 KQLPSSSHAHNYREDGSTKKLLQRLKEMTNLVSDFDVQLVVARKAITNSKVSHFEEFINS 206
K + S NY D S +++ K + V + +++ A KA++N+K S F F NS
Sbjct: 1229 KVVAQSGEFKNYLVDNSANEIVDSSK---SYVDKSNFKVLDANKAVSNAKESLFNTFKNS 1285

Query: 207 YDLGDPIVFVKEL 245
++L + +L
Sbjct: 1286 FNLNTKQILTNDL 1298


>tr|Q032R7|Q032R7_LACLS Putative uncharacterized protein
OS=Lactococcus lactis subsp. cremoris (strain SK11)
GN=LACR_0187 PE=4 SV=1
Length = 255

Score = 33.1 bits (74), Expect = 7.2
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 12/64 (18%)
Frame = +3

Query: 54 HNYREDGSTKKLLQRLKEMTN----LVSDFDVQLV--------VARKAITNSKVSHFEEF 197
HNYRE +KL QR ++ + +V D+ + + +K + ++K+ H E++
Sbjct: 38 HNYREAFDAEKLEQRFSDVLDKYDYIVGDWGFEQLRLKGFFSTSRKKMLADNKIDHLEDY 97

Query: 198 INSY 209
IN Y
Sbjct: 98 INEY 101


>tr|A2RHR2|A2RHR2_LACLM Putative uncharacterized protein
OS=Lactococcus lactis subsp. cremoris (strain MG1363)
GN=llmg_0193 PE=4 SV=1
Length = 255

Score = 33.1 bits (74), Expect = 7.2
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 12/64 (18%)
Frame = +3

Query: 54 HNYREDGSTKKLLQRLKEMTN----LVSDFDVQLV--------VARKAITNSKVSHFEEF 197
HNYRE +KL QR ++ + +V D+ + + +K + ++K+ H E++
Sbjct: 38 HNYREAFDAEKLEQRFSDVLDKYDYIVGDWGFEQLRLKGFFSTSRKKMLADNKIDHLEDY 97

Query: 198 INSY 209
IN Y
Sbjct: 98 INEY 101