BP917863 |
Clone id |
YMU001_000106_E05 |
Library |
YMU01 |
Length |
362 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000106_E05. |
Accession |
BP917863 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2635Contig1 |
Sequence |
TGAGAACTCAACTAGCCGACATAGAGAAACAACTCCCATCGTCATCTCATGCTCACAACT ATAGAGAAGATGGATCGACAAAGAAGCTTCTTCAACGTTTGAAAGAGATGACGAATTTAG TATCAGATTTTGATGTGCAATTGGTGGTTGCTAGGAAGGCAATCACAAATTCAAAGGTAT CTCACTTTGAAGAGTTTATCAATAGTTATGATCTTGGAGATCCAATTGTTTTTGTCAAGG AACTTCTATTAAGGAAGGGCATTATCGGGCTGGACTTCTCCGGAAATGCTATTTTCTTGG AGCCCTATGCAATAGCCTCTTCTCATCATTCGTCAACTGAGCTACGTACGAAAGAGGAGA AT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A8FF40 |
Definition |
sp|A8FF40|GCSPA_BACP2 Probable glycine dehydrogenase [decarboxylating] subunit 1 OS=Bacillus pumilus (strain SAFR-032) |
Align length |
61 |
Score (bit) |
32.7 |
E-value |
0.58 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917863|Adiantum capillus-veneris mRNA, clone: YMU001_000106_E05. (362 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|A8FF40|GCSPA_BACP2 Probable glycine dehydrogenase [decarboxyl... 33 0.58 sp|A0AVI4|TM129_HUMAN Transmembrane protein 129 OS=Homo sapiens ... 31 2.2 sp|Q07630|RDRP_PVXHB RNA replication protein OS=Potato virus X (... 30 2.9 sp|P17779|RDRP_PVXX3 RNA replication protein OS=Potato virus X (... 30 3.8 sp|P09395|RDRP_PVX RNA replication protein OS=Potato virus X PE=... 30 3.8 sp|Q5WF31|GCSPA_BACSK Probable glycine dehydrogenase [decarboxyl... 30 3.8 sp|P22591|RDRP_PVXCP RNA replication protein OS=Potato virus X (... 30 4.9 sp|O74424|NU211_SCHPO Nucleoporin nup211 OS=Schizosaccharomyces ... 30 4.9 sp|O29145|Y1120_ARCFU Uncharacterized protein AF_1120 OS=Archaeo... 29 6.4 sp|A5V605|EFG_SPHWW Elongation factor G OS=Sphingomonas wittichi... 29 8.4
>sp|A8FF40|GCSPA_BACP2 Probable glycine dehydrogenase [decarboxylating] subunit 1 OS=Bacillus pumilus (strain SAFR-032) GN=gcvPA PE=3 SV=1 Length = 448
Score = 32.7 bits (73), Expect = 0.58 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 1/61 (1%) Frame = +3
Query: 180 SHFEEFINSYDLGDPIVFVKELLLRKGII-GLDFSGNAIFLEPYAIASSHHSSTELRTKE 356 +HF EF+ L +P+ V + LL KGII G D + L+ + + + TELRTKE Sbjct: 381 THFNEFV--IKLQEPVQEVNKRLLEKGIIGGYDLGRDYPELQHHMLV----AVTELRTKE 434
Query: 357 E 359 E Sbjct: 435 E 435
>sp|A0AVI4|TM129_HUMAN Transmembrane protein 129 OS=Homo sapiens GN=TMEM129 PE=2 SV=1 Length = 362
Score = 30.8 bits (68), Expect = 2.2 Identities = 19/63 (30%), Positives = 33/63 (52%) Frame = +3
Query: 123 SDFDVQLVVARKAITNSKVSHFEEFINSYDLGDPIVFVKELLLRKGIIGLDFSGNAIFLE 302 S+ VQL+ R A TN V F+ ++NS + G+ ++ + R + + S +FLE Sbjct: 203 SNLPVQLLTIRVASTNPAVQAFDIWLNSTEYGELCEKLRAPIRRAAHVVIHQSLGDLFLE 262
Query: 303 PYA 311 +A Sbjct: 263 TFA 265
>sp|Q07630|RDRP_PVXHB RNA replication protein OS=Potato virus X (strain HB) PE=3 SV=1 Length = 1456
Score = 30.4 bits (67), Expect = 2.9 Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Frame = +3
Query: 12 LADIEKQLPSSSHAHN--YREDGSTKKLL--QRLKEMTNLVSDFDVQLVVARKAITNSKV 179 L ++++ S +H H+ + + +T +L Q+ K+ T L + D +L T+++ Sbjct: 1031 LEKFDREIHSEAHGHSNCVQTEDTTVQLFSHQQAKDETLLWATIDARLK------TSNQE 1084
Query: 180 SHFEEFINSYDLGD 221 S+F EF++ D+GD Sbjct: 1085 SNFREFLSKRDIGD 1098
>sp|P17779|RDRP_PVXX3 RNA replication protein OS=Potato virus X (strain X3) PE=3 SV=1 Length = 1456
Score = 30.0 bits (66), Expect = 3.8 Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Frame = +3
Query: 12 LADIEKQLPSSSHAHN--YREDGSTKKLL--QRLKEMTNLVSDFDVQLVVARKAITNSKV 179 L ++++ S SH H+ + + +T +L Q+ K+ T L + D +L T+++ Sbjct: 1031 LEKFDREIHSESHGHSNCVQTEDTTIQLFSHQQAKDETLLWATIDARLK------TSNQE 1084
Query: 180 SHFEEFINSYDLGD 221 ++F EF++ D+GD Sbjct: 1085 ANFREFLSKKDIGD 1098
>sp|P09395|RDRP_PVX RNA replication protein OS=Potato virus X PE=3 SV=1 Length = 1456
Score = 30.0 bits (66), Expect = 3.8 Identities = 20/74 (27%), Positives = 41/74 (55%), Gaps = 4/74 (5%) Frame = +3
Query: 12 LADIEKQLPSSSHAHN--YREDGSTKKLL--QRLKEMTNLVSDFDVQLVVARKAITNSKV 179 L ++++ S SH H+ + + +T +L Q+ K+ T L + D +L T+++ Sbjct: 1031 LEKFDREIHSESHGHSNCVQTEDTTIQLFSHQQAKDETLLWATIDARLK------TSNQE 1084
Query: 180 SHFEEFINSYDLGD 221 ++F EF++ D+GD Sbjct: 1085 TNFREFLSKKDIGD 1098
>sp|Q5WF31|GCSPA_BACSK Probable glycine dehydrogenase [decarboxylating] subunit 1 OS=Bacillus clausii (strain KSM-K16) GN=gcvPA PE=3 SV=1 Length = 448
Score = 30.0 bits (66), Expect = 3.8 Identities = 23/58 (39%), Positives = 29/58 (50%) Frame = +3
Query: 186 FEEFINSYDLGDPIVFVKELLLRKGIIGLDFSGNAIFLEPYAIASSHHSSTELRTKEE 359 F EF+ + G P+ V LL KG+IG G+ +EP TELRTKEE Sbjct: 384 FNEFV--INCGQPVKDVNRQLLEKGMIGGFDLGS---VEPERNGQMLVCVTELRTKEE 436
>sp|P22591|RDRP_PVXCP RNA replication protein OS=Potato virus X (strain CP) PE=3 SV=1 Length = 1456
Score = 29.6 bits (65), Expect = 4.9 Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 4/74 (5%) Frame = +3
Query: 12 LADIEKQLPSSSHAHN--YREDGSTKKLL--QRLKEMTNLVSDFDVQLVVARKAITNSKV 179 L ++++ S +H H+ + + +T +L Q K+ T L + D +L T+++ Sbjct: 1031 LEKFDREIHSDAHGHSNCVQTEDTTIQLFSHQEAKDETLLWATIDARLK------TSNQE 1084
Query: 180 SHFEEFINSYDLGD 221 S+F EF++ D+GD Sbjct: 1085 SNFREFLSKRDIGD 1098
>sp|O74424|NU211_SCHPO Nucleoporin nup211 OS=Schizosaccharomyces pombe GN=nup211 PE=1 SV=1 Length = 1837
Score = 29.6 bits (65), Expect = 4.9 Identities = 21/69 (30%), Positives = 34/69 (49%) Frame = +3
Query: 9 QLADIEKQLPSSSHAHNYREDGSTKKLLQRLKEMTNLVSDFDVQLVVARKAITNSKVSHF 188 +L D+ P+S N E S ++ L RL+++TN + K+I+ +K F Sbjct: 642 KLLDMAPATPNSKLNTNLIEQTSYQRSLIRLEQLTNELESL--------KSISRNKEKKF 693
Query: 189 EEFINSYDL 215 EE I+S L Sbjct: 694 EEAISSLQL 702
>sp|O29145|Y1120_ARCFU Uncharacterized protein AF_1120 OS=Archaeoglobus fulgidus GN=AF_1120 PE=4 SV=1 Length = 170
Score = 29.3 bits (64), Expect = 6.4 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%) Frame = +3
Query: 99 LKEMTNLVSDFDVQLVVARKAITNSKVSHFEEF------INSYDLGDPIVFVKELLLRKG 260 ++EM + SDFD V R+ + N++ +EE ++ YD I+F L R G Sbjct: 22 MREMLGIASDFDAYNVNERRTLKNARYFGYEEMEALAEELSGYDC---IIFTAGLGSRSG 78
Query: 261 IIGLDFSG 284 +D G Sbjct: 79 DALVDLYG 86
>sp|A5V605|EFG_SPHWW Elongation factor G OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=fusA PE=3 SV=1 Length = 690
Score = 28.9 bits (63), Expect = 8.4 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%) Frame = +3
Query: 105 EMTNLVSDFDVQLVVARKAITNSKVSHFEEFINSYDLG-DPIVFVKELLLRKGIIGLDF 278 E ++ D + VAR+ + V E + SY G +P V + LLRKG + DF Sbjct: 196 EYRDIPDDMKDEAAVARQELIELAVEQDEAAMESYLEGNEPDVATLKALLRKGTLAFDF 254
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q1ENW1 |
Definition |
tr|Q1ENW1|Q1ENW1_MUSAC Putative uncharacterized protein OS=Musa acuminata |
Align length |
90 |
Score (bit) |
34.3 |
E-value |
3.2 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917863|Adiantum capillus-veneris mRNA, clone: YMU001_000106_E05. (362 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q1ENW1|Q1ENW1_MUSAC Putative uncharacterized protein OS=Musa ... 34 3.2 tr|Q9CJ28|Q9CJ28_LACLA Putative uncharacterized protein ybiC OS=... 34 4.2 tr|Q9S519|Q9S519_ECOLX Putative glycosyl transferase OS=Escheric... 33 5.5 tr|B3WPH3|B3WPH3_ECOLX Glycosyl transferase, group 1 family prot... 33 5.5 tr|B3IS86|B3IS86_ECOLX Putative uncharacterized protein OS=Esche... 33 5.5 tr|A4CHS1|A4CHS1_9FLAO Putative uncharacterized protein OS=Robig... 33 5.5 tr|Q9KE57|Q9KE57_BACHD BH1001 protein OS=Bacillus halodurans GN=... 33 7.2 tr|Q8EW21|Q8EW21_MYCPE Putative uncharacterized protein MYPE3860... 33 7.2 tr|Q032R7|Q032R7_LACLS Putative uncharacterized protein OS=Lacto... 33 7.2 tr|A2RHR2|A2RHR2_LACLM Putative uncharacterized protein OS=Lacto... 33 7.2 tr|Q4CQI9|Q4CQI9_TRYCR MYH7B protein, putative OS=Trypanosoma cr... 33 7.2
>tr|Q1ENW1|Q1ENW1_MUSAC Putative uncharacterized protein OS=Musa acuminata GN=MA4_82I11.10 PE=4 SV=1 Length = 239
Score = 34.3 bits (77), Expect = 3.2 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 11/90 (12%) Frame = +3
Query: 54 HNYREDG-----------STKKLLQRLKEMTNLVSDFDVQLVVARKAITNSKVSHFEEFI 200 HN REDG T++ L+E++ V D+D ++ VAR + T + +H++EF Sbjct: 129 HNRREDGVQLGLLIWPSIETRENFIALQEVS--VMDWDSEVDVARLSFTEHRKAHYDEFH 186
Query: 201 NSYDLGDPIVFVKELLLRKGIIGLDFSGNA 290 VKELL K ++ D N+ Sbjct: 187 K----------VKELLRAKSLVDEDEEDNS 206
>tr|Q9CJ28|Q9CJ28_LACLA Putative uncharacterized protein ybiC OS=Lactococcus lactis subsp. lactis GN=ybiC PE=4 SV=1 Length = 251
Score = 33.9 bits (76), Expect = 4.2 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 12/64 (18%) Frame = +3
Query: 54 HNYREDGSTKKLLQRLKEMTN----LVSDFDVQLV--------VARKAITNSKVSHFEEF 197 HNYRE +KL QR ++ + +V D+ + + RK + ++K+ H E++ Sbjct: 38 HNYREAFDAEKLEQRFSDVLDKYDYIVGDWGFEQLRLKGFFSTSRRKMLADNKIDHLEDY 97
Query: 198 INSY 209 +N Y Sbjct: 98 VNEY 101
>tr|Q9S519|Q9S519_ECOLX Putative glycosyl transferase OS=Escherichia coli GN=wbdM PE=4 SV=1 Length = 374
Score = 33.5 bits (75), Expect = 5.5 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = +3
Query: 33 LPSSSHAHNYREDGSTKKLLQRLKE----MTNLVSDFDVQLVVARKAITNSKVSHFEEFI 200 +P AHN E G+ + RL + +T VS VQ +ARKA +K+ FI Sbjct: 104 VPLICTAHNKNEGGNARMFCYRLSDFLASITTNVSKEAVQEFIARKATPKNKIVEIPNFI 163
Query: 201 NS 206 N+ Sbjct: 164 NT 165
>tr|B3WPH3|B3WPH3_ECOLX Glycosyl transferase, group 1 family protein OS=Escherichia coli B171 GN=EcB171_0079 PE=4 SV=1 Length = 374
Score = 33.5 bits (75), Expect = 5.5 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = +3
Query: 33 LPSSSHAHNYREDGSTKKLLQRLKE----MTNLVSDFDVQLVVARKAITNSKVSHFEEFI 200 +P AHN E G+ + RL + +T VS VQ +ARKA +K+ FI Sbjct: 104 VPLICTAHNKNEGGNARMFCYRLSDFLASITTNVSKEAVQEFIARKATPKNKIVEIPNFI 163
Query: 201 NS 206 N+ Sbjct: 164 NT 165
>tr|B3IS86|B3IS86_ECOLX Putative uncharacterized protein OS=Escherichia coli E110019 GN=EcE110019_3652 PE=4 SV=1 Length = 374
Score = 33.5 bits (75), Expect = 5.5 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%) Frame = +3
Query: 33 LPSSSHAHNYREDGSTKKLLQRLKE----MTNLVSDFDVQLVVARKAITNSKVSHFEEFI 200 +P AHN E G+ + RL + +T VS VQ +ARKA +K+ FI Sbjct: 104 VPLICTAHNKNEGGNARMFCYRLSDFLASITTNVSKEAVQEFIARKATPKNKIVEIPNFI 163
Query: 201 NS 206 N+ Sbjct: 164 NT 165
>tr|A4CHS1|A4CHS1_9FLAO Putative uncharacterized protein OS=Robiginitalea biformata HTCC2501 GN=RB2501_06255 PE=4 SV=1 Length = 1077
Score = 33.5 bits (75), Expect = 5.5 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 1/109 (0%) Frame = +3
Query: 18 DIEKQLPSSSHAHNYREDGSTKKLLQRLKEMTNLVSDFDVQLVVARKAITNSKVSHFEEF 197 D+ + P + +Y G LL+ KE+ L S+ +V +I S F+ Sbjct: 768 DLINRKPQDFYIKSYNVSGLRLNLLEGYKELVQLNSNNEVGNRSTFLSIF-SNFLRFQRS 826
Query: 198 INSYDLGDPIVFVKELLLRKGIIGLDFSGNAIFLE-PYAIASSHHSSTE 341 +N+Y LG + + + LR+ I+ A+F+E P A+ + S E Sbjct: 827 LNAYTLGTTNLSAEAIRLREAIVSAKDPERALFVEFPNALGYPNLSQEE 875
>tr|Q9KE57|Q9KE57_BACHD BH1001 protein OS=Bacillus halodurans GN=BH1001 PE=4 SV=1 Length = 448
Score = 33.1 bits (74), Expect = 7.2 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 9/62 (14%) Frame = +3
Query: 60 YREDGST------KKLLQRLKEMTNLVSDFDVQLVVARKAITNSKVS---HFEEFINSYD 212 + EDG T K+L Q L+E+ + DFD+ V R + SKV FEE S+D Sbjct: 275 FEEDGETTVEEAIKELEQSLEEIEDYTMDFDLGFKVERGTLLESKVELTMSFEEDGISFD 334
Query: 213 LG 218 +G Sbjct: 335 VG 336
>tr|Q8EW21|Q8EW21_MYCPE Putative uncharacterized protein MYPE3860 OS=Mycoplasma penetrans GN=MYPE3860 PE=4 SV=1 Length = 1378
Score = 33.1 bits (74), Expect = 7.2 Identities = 20/73 (27%), Positives = 36/73 (49%) Frame = +3
Query: 27 KQLPSSSHAHNYREDGSTKKLLQRLKEMTNLVSDFDVQLVVARKAITNSKVSHFEEFINS 206 K + S NY D S +++ K + V + +++ A KA++N+K S F F NS Sbjct: 1229 KVVAQSGEFKNYLVDNSANEIVDSSK---SYVDKSNFKVLDANKAVSNAKESLFNTFKNS 1285
Query: 207 YDLGDPIVFVKEL 245 ++L + +L Sbjct: 1286 FNLNTKQILTNDL 1298
>tr|Q032R7|Q032R7_LACLS Putative uncharacterized protein OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=LACR_0187 PE=4 SV=1 Length = 255
Score = 33.1 bits (74), Expect = 7.2 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 12/64 (18%) Frame = +3
Query: 54 HNYREDGSTKKLLQRLKEMTN----LVSDFDVQLV--------VARKAITNSKVSHFEEF 197 HNYRE +KL QR ++ + +V D+ + + +K + ++K+ H E++ Sbjct: 38 HNYREAFDAEKLEQRFSDVLDKYDYIVGDWGFEQLRLKGFFSTSRKKMLADNKIDHLEDY 97
Query: 198 INSY 209 IN Y Sbjct: 98 INEY 101
>tr|A2RHR2|A2RHR2_LACLM Putative uncharacterized protein OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=llmg_0193 PE=4 SV=1 Length = 255
Score = 33.1 bits (74), Expect = 7.2 Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 12/64 (18%) Frame = +3
Query: 54 HNYREDGSTKKLLQRLKEMTN----LVSDFDVQLV--------VARKAITNSKVSHFEEF 197 HNYRE +KL QR ++ + +V D+ + + +K + ++K+ H E++ Sbjct: 38 HNYREAFDAEKLEQRFSDVLDKYDYIVGDWGFEQLRLKGFFSTSRKKMLADNKIDHLEDY 97
Query: 198 INSY 209 IN Y Sbjct: 98 INEY 101
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