BP917870
Clone id YMU001_000106_F02
Library
Length 555
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000106_F02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TCCTCAGGCCAGGCCGAAGACCCTCCCCCCTCTAAAGAGAAAGCGTGACGACTACCATTT
TGCTCATCATGTCCAGCCTTCGATAACGCTGAGCAGCAATTCTCTAGATAAGAATCAAGC
ATCGGAGAAGCCACTATTTCTGAGCTTGTCTCCCTGCCACTTAGGCAACTACTCTTCTGT
TCTGAAAGGTGTGACGAAGTCCTTGTTAATTCATCGCACTCGTGTTCTTTAATGTCGGCA
GGCACTGATTCCCCATTTCTTGCGGCGTCGGGAGAGCTTCTGCACGTCCTCTCAAGCTCA
CACTTATCCTGTGAAATGCTGATAGGACTAGTGTCAATGGTCCTTTCCAATGTCACCATC
TTTAATTTCTCTGGAGCTAATTTTAAGCCTGACCCAGGCCAAGGTATAGCAATAGAAACA
TGTTGAGCAGAGAAGTCTTCATAGGACCTTGAAAGAGATTTCTGTTTTTGGGCGGAGTGC
AGGCTTGCATCATAATATTTCCATATGCAAACACGTGAATCTTCGCTTGCACAAATTACG
TACATCCCATTGGAG
■■Homology search results ■■ -
sp_hit_id Q6LA54
Definition sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein C3H5.08c OS=Schizosaccharomyces pombe
Align length 31
Score (bit) 33.5
E-value 0.71
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917870|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_F02.
(555 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protei... 33 0.71
sp|Q253A8|Y858_CHLFF UPF0161 protein CF0858 OS=Chlamydophila fel... 32 2.1
sp|Q6P9P6|KIF11_MOUSE Kinesin-like protein KIF11 OS=Mus musculus... 32 2.1
sp|Q9HB65|ELL3_HUMAN RNA polymerase II elongation factor ELL3 OS... 32 2.7
sp|P23984|VP40_ILTVT Capsid protein P40 OS=Infectious laryngotra... 31 3.5
sp|Q94527|NFKB1_DROME Nuclear factor NF-kappa-B p110 subunit OS=... 31 3.5
sp|Q8N283|ANR35_HUMAN Ankyrin repeat domain-containing protein 3... 31 4.6
sp|Q28Y46|DCTN2_DROPS Probable dynactin subunit 2 OS=Drosophila ... 30 6.0
sp|P13788|RR4_SPIOL 30S ribosomal protein S4, chloroplastic OS=S... 30 7.9
sp|Q7TNF8|RIMB1_MOUSE Peripheral-type benzodiazepine receptor-as... 30 7.9

>sp|Q6LA54|YF48_SCHPO Uncharacterized WD repeat-containing protein
C3H5.08c OS=Schizosaccharomyces pombe GN=SPAC3H5.08c
PE=1 SV=1
Length = 855

Score = 33.5 bits (75), Expect = 0.71
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2

Query: 551 NGMYVICASEDSRVCIWKYYDASLHSAQKQK 459
+G YVIC SED +V IW +H +K+K
Sbjct: 503 DGNYVICGSEDHQVFIWDLPPQHMHKTKKKK 533


>sp|Q253A8|Y858_CHLFF UPF0161 protein CF0858 OS=Chlamydophila felis
(strain Fe/C-56) GN=CF0858 PE=3 SV=1
Length = 103

Score = 32.0 bits (71), Expect = 2.1
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = -2

Query: 434 FSAQHVSIAIPWPGSGLKLAPEKLKMVTLERTIDTSPISISQDKCE 297
F+ + + PW G+ L P M TLE ++D SP + D C+
Sbjct: 59 FTIKRIGKCGPWHPGGVDLVP----MTTLEESLDISPATNDDDSCD 100


>sp|Q6P9P6|KIF11_MOUSE Kinesin-like protein KIF11 OS=Mus musculus
GN=Kif11 PE=2 SV=1
Length = 1052

Score = 32.0 bits (71), Expect = 2.1
Identities = 20/59 (33%), Positives = 31/59 (52%)
Frame = -2

Query: 257 NGESVPADIKEHECDELTRTSSHLSEQKSSCLSGRETSSEIVASPMLDSYLENCCSALS 81
N E+V +I + +C L ++ H S+Q +SCLS R+ E L ++ CC A S
Sbjct: 806 NLETVSQEITQ-KCGTLNTSTVHFSDQWASCLSKRKEELE-----NLMEFVNGCCKASS 858


>sp|Q9HB65|ELL3_HUMAN RNA polymerase II elongation factor ELL3
OS=Homo sapiens GN=ELL3 PE=2 SV=2
Length = 397

Score = 31.6 bits (70), Expect = 2.7
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = -2

Query: 320 SISQDKCELERTCRSSPDAARNGESVPADIKEHECDELTRTSSHLSEQK 174
++SQ + LE S P A+ G+S+P +EH R+ +H+ ++
Sbjct: 151 AVSQPQMALEEVSVSDPLASNQGQSLPGSSREHMAQWEVRSQTHVPNRE 199


>sp|P23984|VP40_ILTVT Capsid protein P40 OS=Infectious
laryngotracheitis virus (strain Thorne V882) PE=3 SV=1
Length = 586

Score = 31.2 bits (69), Expect = 3.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2

Query: 68 HVQPSITLSSNSLDKNQASEKPLFLSLSPCHLG 166
++ PS++LSS L+KN+ K F ++ C LG
Sbjct: 117 NILPSLSLSSRRLEKNEVPGKDFFAHVALCELG 149


>sp|Q94527|NFKB1_DROME Nuclear factor NF-kappa-B p110 subunit
OS=Drosophila melanogaster GN=Rel PE=1 SV=1
Length = 971

Score = 31.2 bits (69), Expect = 3.5
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +2

Query: 62 AHHVQPSITLSSNSLDKNQASEKPLFLSLSPCHLGNYSSVLKGV 193
AH+++P + + N KN A PL +++ HL S L GV
Sbjct: 654 AHYIRPLLGMGCNPNLKNNAGNTPLHVAVKEEHLSCVESFLNGV 697


>sp|Q8N283|ANR35_HUMAN Ankyrin repeat domain-containing protein 35
OS=Homo sapiens GN=ANKRD35 PE=2 SV=2
Length = 1001

Score = 30.8 bits (68), Expect = 4.6
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Frame = -2

Query: 425 QHVSIAIPWPGSGLKLAPEKLKMVTLERTIDTSPISISQDKCELERT--CRSSPDAARNG 252
+ V + W +GL++ PE + E + +P SI QD+ + +R R P A G
Sbjct: 542 ERVLARLEWAKAGLQVKPEVPSQESREGALKAAPGSIKQDEEKEKRVPGARGEPLGALGG 601

Query: 251 ESVPADIK----EHECDELTRTSSHLSEQ 177
E + E E L ++S+L E+
Sbjct: 602 EKALGGLAKGQLEKEMSVLRLSNSNLLEE 630


>sp|Q28Y46|DCTN2_DROPS Probable dynactin subunit 2 OS=Drosophila
pseudoobscura pseudoobscura GN=Dmn PE=3 SV=1
Length = 380

Score = 30.4 bits (67), Expect = 6.0
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = -2

Query: 476 SAQKQKSLSRSYEDFSAQHVSIAIPWPGSGL----KLAPEKLKMVTLERTIDTSPISISQ 309
++++ K+L E+F V AIP PG+ L ++A + ++ LE+T+ P +S+
Sbjct: 164 NSKQVKALISQVEEFKQSGVLTAIPTPGTDLASTARVASLEQRLYQLEKTVGAQPEKLSR 223


>sp|P13788|RR4_SPIOL 30S ribosomal protein S4, chloroplastic
OS=Spinacia oleracea GN=rps4 PE=1 SV=3
Length = 201

Score = 30.0 bits (66), Expect = 7.9
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +2

Query: 23 LPPLKRKRDDYHFAHHVQPSITLSSNSLDKNQASEKPLFLSLSP 154
+P + K D A Q SI L NSLD + E P L+L+P
Sbjct: 125 IPSYRCKPQDTIMARDEQKSIALIQNSLDLSPREELPKHLTLNP 168


>sp|Q7TNF8|RIMB1_MOUSE Peripheral-type benzodiazepine
receptor-associated protein 1 OS=Mus musculus GN=Bzrap1
PE=1 SV=2
Length = 1846

Score = 30.0 bits (66), Expect = 7.9
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 3/96 (3%)
Frame = -2

Query: 473 AQKQKSLSRSYEDFSAQHVSIAIPWPGSGLKLAPEKLKMVTLERTIDTSPISISQDK--C 300
A++ + ++ ++ + + VS +P PGS L+L + L +T+ +++DK
Sbjct: 171 AKRLEERAQKLQETNMRVVSAPVPRPGSSLELCRKALARQRARDLSETASALLAKDKQIA 230

Query: 299 ELERTCRS-SPDAARNGESVPADIKEHECDELTRTS 195
L+R CR + G+ P + + D L R S
Sbjct: 231 ALQRECRELQARLSLVGKEGPQWLHMRDFDRLLRES 266


tr_hit_id A7P1I9
Definition tr|A7P1I9|A7P1I9_VITVI Chromosome chr19 scaffold_4, whole genome shotgun sequence OS=Vitis vinifera
Align length 55
Score (bit) 61.2
E-value 3.0e-08
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917870|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_F02.
(555 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A7P1I9|A7P1I9_VITVI Chromosome chr19 scaffold_4, whole genome... 61 3e-08
tr|A7PNL8|A7PNL8_VITVI Chromosome chr8 scaffold_23, whole genome... 58 3e-07
tr|Q9FK21|Q9FK21_ARATH Similarity to WD-containing protein OS=Ar... 56 1e-06
tr|Q7FAN9|Q7FAN9_ORYSJ Os04g0678300 protein OS=Oryza sativa subs... 54 7e-06
tr|Q259C8|Q259C8_ORYSA H0801D08.5 protein (H0402C08.15 protein) ... 54 7e-06
tr|B8ARG9|B8ARG9_ORYSI Putative uncharacterized protein OS=Oryza... 54 7e-06
tr|A3AYN3|A3AYN3_ORYSJ Putative uncharacterized protein OS=Oryza... 54 7e-06
tr|B4FFW3|B4FFW3_MAIZE Putative uncharacterized protein OS=Zea m... 53 1e-05
tr|A9S405|A9S405_PHYPA Predicted protein OS=Physcomitrella paten... 53 1e-05
tr|A9TFC5|A9TFC5_PHYPA Predicted protein (Fragment) OS=Physcomit... 52 2e-05
tr|Q9LDG7|Q9LDG7_ARATH WD-40 repeat protein-like (AT3g15470/MJK1... 52 2e-05
tr|A9TT82|A9TT82_PHYPA Predicted protein OS=Physcomitrella paten... 52 3e-05
tr|Q9LZ59|Q9LZ59_ARATH Putative uncharacterized protein T22P11_2... 50 1e-04
tr|A9T0D4|A9T0D4_PHYPA Predicted protein (Fragment) OS=Physcomit... 50 1e-04
tr|Q7XS41|Q7XS41_ORYSJ OSJNBa0074L08.11 protein OS=Oryza sativa ... 49 2e-04
tr|B8ASC7|B8ASC7_ORYSI Putative uncharacterized protein OS=Oryza... 49 2e-04
tr|A9TQH8|A9TQH8_PHYPA Predicted protein OS=Physcomitrella paten... 48 3e-04
tr|B6U7W0|B6U7W0_MAIZE Signal transducer OS=Zea mays PE=2 SV=1 47 9e-04
tr|B4FG57|B4FG57_MAIZE Putative uncharacterized protein OS=Zea m... 47 9e-04
tr|Q9FHY2|Q9FHY2_ARATH Similarity to unknown protein OS=Arabidop... 46 0.001
tr|B8BJI7|B8BJI7_ORYSI Putative uncharacterized protein OS=Oryza... 45 0.002
tr|A7QB92|A7QB92_VITVI Chromosome chr4 scaffold_73, whole genome... 45 0.002
tr|O80935|O80935_ARATH Putative WD-40 repeat protein OS=Arabidop... 45 0.003
tr|Q53P51|Q53P51_ORYSJ Expressed protein OS=Oryza sativa subsp. ... 44 0.004
tr|Q7XQE7|Q7XQE7_ORYSJ OSJNBa0033G16.13 protein OS=Oryza sativa ... 43 0.010
tr|Q0JDA3|Q0JDA3_ORYSJ Os04g0417800 protein OS=Oryza sativa subs... 43 0.010
tr|Q01I39|Q01I39_ORYSA OSIGBa0092M08.13 protein OS=Oryza sativa ... 43 0.010
tr|B8BNG0|B8BNG0_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.010
tr|B8ATP7|B8ATP7_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.010
tr|A3CFH2|A3CFH2_ORYSJ Putative uncharacterized protein OS=Oryza... 43 0.010

>tr|A7P1I9|A7P1I9_VITVI Chromosome chr19 scaffold_4, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00027633001
PE=4 SV=1
Length = 769

Score = 61.2 bits (147), Expect = 3e-08
Identities = 30/55 (54%), Positives = 38/55 (69%)
Frame = -2

Query: 551 NGMYVICASEDSRVCIWKYYDASLHSAQKQKSLSRSYEDFSAQHVSIAIPWPGSG 387
NG YV+CASEDS V +WK+ S K +++RSYE F +Q VS+AIPWPG G
Sbjct: 593 NGKYVVCASEDSYVYVWKHDTRPGRS--KGIAVTRSYEHFHSQDVSVAIPWPGMG 645


>tr|A7PNL8|A7PNL8_VITVI Chromosome chr8 scaffold_23, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00021311001
PE=4 SV=1
Length = 817

Score = 58.2 bits (139), Expect = 3e-07
Identities = 50/144 (34%), Positives = 71/144 (49%), Gaps = 2/144 (1%)
Frame = -2

Query: 551 NGMYVICASEDSRVCIWKYYDASLHSAQKQKSL--SRSYEDFSAQHVSIAIPWPGSGLKL 378
+G YVI ASEDS+V +W+ + A K KSL +RS+E F ++ VS+AIPWPGS +K
Sbjct: 607 DGKYVISASEDSQVYVWRRDEVRHIGAGKGKSLVTTRSHEHFQSRDVSVAIPWPGS-VKG 665

Query: 377 APEKLKMVTLERTIDTSPISISQDKCELERTCRSSPDAARNGESVPADIKEHECDELTRT 198
P + V +R S + +D SS D + + P K D R
Sbjct: 666 EPPVVP-VHSKRHSKRSGSTSQED---------SSTDGSNKAQLPPLPKKNSSLD---RM 712

Query: 197 SSHLSEQKSSCLSGRETSSEIVAS 126
+ E+ +SCL SSE +S
Sbjct: 713 PTCPEEEMTSCLDPGIGSSESFSS 736


>tr|Q9FK21|Q9FK21_ARATH Similarity to WD-containing protein
OS=Arabidopsis thaliana GN=At5g54200 PE=4 SV=1
Length = 825

Score = 56.2 bits (134), Expect = 1e-06
Identities = 24/54 (44%), Positives = 35/54 (64%)
Frame = -2

Query: 554 SNGMYVICASEDSRVCIWKYYDASLHSAQKQKSLSRSYEDFSAQHVSIAIPWPG 393
SNG +++ ASEDS V +W Y S K+ +++ SYE+F + VS+A PWPG
Sbjct: 654 SNGKFLVSASEDSNVYVWNYDSDSRAGRSKRVTVTNSYENFYCRDVSVAAPWPG 707


>tr|Q7FAN9|Q7FAN9_ORYSJ Os04g0678300 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0064G10.23 PE=4 SV=1
Length = 819

Score = 53.5 bits (127), Expect = 7e-06
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = -2

Query: 551 NGMYVICASEDSRVCIWKYYDASLHSAQKQK-SLSRSYEDFSAQHVSIAIPWPGS 390
NG YV+CASEDS V +W++ + S S + ++ SYE F V++AI WPG+
Sbjct: 641 NGKYVVCASEDSHVYVWRHDNTSHPSRSRSAVDVTNSYEHFHCHDVTVAITWPGA 695


>tr|Q259C8|Q259C8_ORYSA H0801D08.5 protein (H0402C08.15 protein)
OS=Oryza sativa GN=H0801D08.5 PE=4 SV=1
Length = 785

Score = 53.5 bits (127), Expect = 7e-06
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = -2

Query: 551 NGMYVICASEDSRVCIWKYYDASLHSAQKQK-SLSRSYEDFSAQHVSIAIPWPGS 390
NG YV+CASEDS V +W++ + S S + ++ SYE F V++AI WPG+
Sbjct: 607 NGKYVVCASEDSHVYVWRHDNTSHPSRSRSAVDVTNSYEHFHCHDVTVAITWPGA 661


>tr|B8ARG9|B8ARG9_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_17932 PE=4 SV=1
Length = 816

Score = 53.5 bits (127), Expect = 7e-06
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = -2

Query: 551 NGMYVICASEDSRVCIWKYYDASLHSAQKQK-SLSRSYEDFSAQHVSIAIPWPGS 390
NG YV+CASEDS V +W++ + S S + ++ SYE F V++AI WPG+
Sbjct: 638 NGKYVVCASEDSHVYVWRHDNTSHPSRSRSAVDVTNSYEHFHCHDVTVAITWPGA 692


>tr|A3AYN3|A3AYN3_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_015905 PE=4 SV=1
Length = 788

Score = 53.5 bits (127), Expect = 7e-06
Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)
Frame = -2

Query: 551 NGMYVICASEDSRVCIWKYYDASLHSAQKQK-SLSRSYEDFSAQHVSIAIPWPGS 390
NG YV+CASEDS V +W++ + S S + ++ SYE F V++AI WPG+
Sbjct: 610 NGKYVVCASEDSHVYVWRHDNTSHPSRSRSAVDVTNSYEHFHCHDVTVAITWPGA 664


>tr|B4FFW3|B4FFW3_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 391

Score = 53.1 bits (126), Expect = 1e-05
Identities = 49/169 (28%), Positives = 69/169 (40%), Gaps = 2/169 (1%)
Frame = -2

Query: 551 NGMYVICASEDSRVCIWKYYDASLHSAQKQ--KSLSRSYEDFSAQHVSIAIPWPGSGLKL 378
NG Y+ICASEDS V +W+ +D S H ++ + ++ SYE F V++A+ WPG+
Sbjct: 229 NGKYIICASEDSHVYVWR-HDNSSHPSRNRITVDVTNSYEHFHCHGVTVAVTWPGAE--- 284

Query: 377 APEKLKMVTLERTIDTSPISISQDKCELERTCRSSPDAARNGESVPADIKEHECDELTRT 198
R S S D S A +G +PA+ +H D T
Sbjct: 285 ----------ARGSFGSRSSRHSD----------SDGAVNSGRDIPAENSQHNSD--AGT 322

Query: 197 SSHLSEQKSSCLSGRETSSEIVASPMLDSYLENCCSALSKAGHDEQNGS 51
S H ++ S TS P S +C S L D Q S
Sbjct: 323 SRHPGDRAS-------TSWPDEKLPSAKSSPSHCSSDLCIGAMDVQRRS 364


>tr|A9S405|A9S405_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_74281 PE=4 SV=1
Length = 328

Score = 53.1 bits (126), Expect = 1e-05
Identities = 26/65 (40%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Frame = -2

Query: 551 NGMYVICASEDSRVCIWKYY--DASLHSAQKQKSLSRSYEDFSAQHVSIAIPWPGSGLKL 378
+G +++ ASEDSRV +W + D S ++ ++ S E+F+A+HVS+AI WP S +
Sbjct: 169 SGDFIVSASEDSRVLVWSSFNKDTSNKTSLYRRDKQLSCEEFTARHVSVAITWPDSSARS 228

Query: 377 APEKL 363
A E L
Sbjct: 229 ASEPL 233


>tr|A9TFC5|A9TFC5_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_144791 PE=4 SV=1
Length = 666

Score = 52.4 bits (124), Expect = 2e-05
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Frame = -2

Query: 551 NGMYVICASEDSRVCIWKYY--DASLHSAQKQKSLSRSYEDFSAQHVSIAIPWPGSGLKL 378
NG ++I ASEDSRV +W D S S+ +K S E+F+++HVS+AI WP S ++
Sbjct: 467 NGDFIISASEDSRVLVWSSANRDISNKSSLYRKDKQLSCEEFTSRHVSVAIAWPDSSVRS 526

Query: 377 A 375
A
Sbjct: 527 A 527