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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917880
Clone id YMU001_000106_G04
Library
Length 473
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000106_G04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CAATACTATACAAAATTGTACATGGTTAAATGGTCCACTACAGAAGGTGTGGTAAAAGTA
AAATACTCATACACCCAACATATTTGCAAGGCAAAGTACGTCAATGGTCTTTCCCTACTG
AAGGTAGAAGCAAATGATGGGAGTATGGGAGGCATTAAGACTCTGAGCCTCCCTTTCAAC
CGCGCACAACCACCCTTGAAGTAGGTTAGAGACGATGGATGGCAAGTGAGCTCACATTCA
AGGCTTCAAAATCCATCAAAACCTATACCAATGCCACATGCAGTTTCAGCTGCAAGATTA
TGCATCGACAATTCATTCAGAAGATATAACCGCATTGCATTATACTTTTGCAAAAACCTG
TCTGCACACATTGTTCTGCTTTACGTCATAATGCATTCTCCAATCTGATAGGTCCAAATA
TTTCTGTCTCCCTTTGCATGCCAGATGCTGTATATATACTAGCCATATATGCA
■■Homology search results ■■ -
sp_hit_id Q6IV68
Definition sp|Q6IV68|FACD2_RAT Fanconi anemia group D2 protein homolog OS=Rattus norvegicus
Align length 65
Score (bit) 32.7
E-value 0.84
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917880|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_G04.
         (473 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6IV68|FACD2_RAT Fanconi anemia group D2 protein homolog OS=R...    33   0.84 
sp|P18163|ACSL1_RAT Long-chain-fatty-acid--CoA ligase 1 OS=Rattu...    32   1.1  
sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus...    32   1.1  
sp|P33121|ACSL1_HUMAN Long-chain-fatty-acid--CoA ligase 1 OS=Hom...    32   1.4  
sp|Q9JID6|ACSL1_CAVPO Long-chain-fatty-acid--CoA ligase 1 OS=Cav...    31   3.2  
sp|Q9NQW1|SC31B_HUMAN Protein transport protein Sec31B OS=Homo s...    29   9.3  

>sp|Q6IV68|FACD2_RAT Fanconi anemia group D2 protein homolog OS=Rattus
            norvegicus GN=Fancd2 PE=2 SV=2
          Length = 1451

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
 Frame = +3

Query: 261  TYTNATCSFSCK--------IMHRQFIQKI*PHCIILLQKPVCTHCSALRHNAFSNLIGP 416
            ++T   C F  K         +H++ +Q I  HC++ L  P+C H   + HN F  L   
Sbjct: 983  SFTKRVCFFKNKGSRNIGFSHLHQRSVQDI-VHCVVQLLTPMCNHLENI-HNFFQCLGAE 1040

Query: 417  NISVS 431
            N+SV+
Sbjct: 1041 NLSVN 1045


>sp|P18163|ACSL1_RAT Long-chain-fatty-acid--CoA ligase 1 OS=Rattus
           norvegicus GN=Acsl1 PE=1 SV=1
          Length = 699

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 242 LECELTCHPSSLTYFKGGCARLKGRLRVLMPPILP 138
           +EC + CH + + +F+G    L   L+VL P I P
Sbjct: 331 VECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFP 365


>sp|P41216|ACSL1_MOUSE Long-chain-fatty-acid--CoA ligase 1 OS=Mus
           musculus GN=Acsl1 PE=1 SV=1
          Length = 699

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -1

Query: 242 LECELTCHPSSLTYFKGGCARLKGRLRVLMPPILP 138
           +EC + CH + + +F+G    L   L+VL P I P
Sbjct: 331 VECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTIFP 365


>sp|P33121|ACSL1_HUMAN Long-chain-fatty-acid--CoA ligase 1 OS=Homo
           sapiens GN=ACSL1 PE=1 SV=1
          Length = 698

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 242 LECELTCHPSSLTYFKGGCARLKGRLRVLMPPILP 138
           +EC + CH + + +F+G    L   L+VL P + P
Sbjct: 330 VECVMLCHGAKIGFFQGDIRLLMDDLKVLQPTVFP 364


>sp|Q9JID6|ACSL1_CAVPO Long-chain-fatty-acid--CoA ligase 1 OS=Cavia
           porcellus GN=ACSL1 PE=2 SV=1
          Length = 698

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 242 LECELTCHPSSLTYFKGGCARLKGRLRVLMPPILP 138
           L+C + CH + + +F+G    L   L+ L P I P
Sbjct: 330 LQCVMLCHGAKIGFFQGDIRLLMDDLKALQPTIFP 364


>sp|Q9NQW1|SC31B_HUMAN Protein transport protein Sec31B OS=Homo
           sapiens GN=SEC31B PE=1 SV=1
          Length = 1179

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 169 LPFNRAQPPLK*VRDDGWQVSSHSRLQNPSKPIPMPHAVSAARL 300
           LP + AQPP++ +RD  +     + L   S P P P  V  A L
Sbjct: 764 LPRDCAQPPVQQLRDRLFHAQGSAVLGQQSPPFPFPRIVVGATL 807
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917880|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_G04.
         (473 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******