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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917887
Clone id YMU001_000106_H02
Library
Length 481
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000106_H02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GGGCGCAGGTATCATTGCAGCTGCTGCATCAGCACTCATTCCATAAACCAAGTCCTCGCT
GGTAGGCACAGAATGCCATGAAGAAGTCACGTGCTCTGATTTTTAGAGGTTGTGCTCTGA
TTTTTGAGGTAATCGGCTATTAGCATCTGCTACCTCCTTACCACGGGGAGCCATAAGCTG
AGATACAATCTTCTTATTGGGTTGAATTAGCTCCTGTGTTCCAACGAGGCCTTTCTTTTA
CTTTTCTAGCAAGGACAAAGGTTTTGATGCATGTTCATGAACCTTGGGTTGGGCCTCCTC
TCCACATTTCGGTAAGGGTGGCGTGGTGGCAGAGGCTTAGCCAGCCTTTGAACCCCCAGC
GTTAGCCACGTTTAACCTACCCCCATTGTTCGCAATGGGTTTGTTTCAACCACAGGAAAT
ATCCTGGTCCTCATCTCCTTGAGAGCTTTCTGCTCTGAGAGCTTTATTGTCATCTTCATC
T
■■Homology search results ■■ -
sp_hit_id A6MVX2
Definition sp|A6MVX2|RPOC2_RHDSA DNA-directed RNA polymerase subunit beta'' OS=Rhodomonas salina
Align length 33
Score (bit) 29.6
E-value 7.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917887|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_H02.
         (481 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A6MVX2|RPOC2_RHDSA DNA-directed RNA polymerase subunit beta''...    30   7.5  

>sp|A6MVX2|RPOC2_RHDSA DNA-directed RNA polymerase subunit beta''
            OS=Rhodomonas salina GN=rpoC2 PE=3 SV=1
          Length = 1303

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 480  DEDDNKALRAESSQGDEDQDISCG*NKPIANNG 382
            D +DNK +R  SS G+ ++ I  G  K I +NG
Sbjct: 1025 DSEDNKCIRILSSNGEYNEYIMSGIQKIIVSNG 1057
tr_hit_id A1TE57
Definition tr|A1TE57|A1TE57_MYCVP Putative uncharacterized protein OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
Align length 46
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917887|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_H02.
         (481 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A1TE57|A1TE57_MYCVP Putative uncharacterized protein OS=Mycob...    37   0.49 

>tr|A1TE57|A1TE57_MYCVP Putative uncharacterized protein
           OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1)
           GN=Mvan_4682 PE=4 SV=1
          Length = 570

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
 Frame = +3

Query: 204 ELAPVFQRGLSFTFLARTKVLMHVHEPWVGPPL----HISVRVAWW 329
           E  PVF +G +  F+A  + L   H+PW  P +    H S  +AWW
Sbjct: 437 EWLPVFDKGENVRFVAEPRDLQRPHDPWEQPRVVYLQHASDPIAWW 482