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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917889
Clone id YMU001_000106_H05
Library
Length 382
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000106_H05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGTAGATACTTTAGGGTCTGAAGAAGAGCGTTTATTATCTGCAAAATGTTATTTTGGAAT
AACTCTACTGTTCCTTTTGTGGTTACATAATCCCGAATGGTAGGTTGACTGACATCTGCA
ATGCACTCTCTTATCCACTGCTCTACATGGCTTCCATTCCAGAAACGTGAAATGAGCATT
GGACGCTCTATGTGGCGGACCATGGCAAGTGGATAAATAATGCCGCGATGAGCGATGTCC
AAAGTTGTGGCCTTGTCCTTGACCTACTGATCCACTGGGGGTCCATGCAAGTGGACTTTG
AAGATTTGGTCCGCATACAATGGCTCTTTAAATGCATGGTGTGTGACACCTACACACTTC
ACGTGTGCCCATCTCCCTTCTC
■■Homology search results ■■ -
sp_hit_id Q2PC93
Definition sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus
Align length 56
Score (bit) 33.9
E-value 0.25
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917889|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_H05.
         (382 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1    34   0.25 
sp|Q980M4|TRM56_SULSO tRNA ribose 2'-O-methyltransferase aTrm56 ...    30   2.8  
sp|Q9UQ26|RIMS2_HUMAN Regulating synaptic membrane exocytosis pr...    30   4.8  
sp|Q8INF0|GCY8E_DROME Soluble guanylate cyclase 88E OS=Drosophil...    30   4.8  
sp|Q8NEC5|CTSR1_HUMAN Cation channel sperm-associated protein 1 ...    30   4.8  
sp|Q8X092|ALG11_NEUCR Alpha-1,2-mannosyltransferase alg-11 OS=Ne...    30   4.8  
sp|P41913|GDS1_YEAST Protein GDS1 OS=Saccharomyces cerevisiae GN...    29   6.3  
sp|A5GFW5|CASS4_PIG Cas scaffolding protein family member 4 OS=S...    29   6.3  
sp|O13730|MDE6_SCHPO Mei4-dependent protein 6 OS=Schizosaccharom...    29   6.3  
sp|Q87EL2|ARGB_XYLFT Acetylglutamate kinase OS=Xylella fastidios...    29   8.2  
sp|Q9PEM7|ARGB_XYLFA Acetylglutamate kinase OS=Xylella fastidios...    29   8.2  

>sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1
          Length = 5255

 Score = 33.9 bits (76), Expect = 0.25
 Identities = 19/56 (33%), Positives = 23/56 (41%)
 Frame = -2

Query: 366  TREVCRCHTPCI*RAIVCGPNLQSPLAWTPSGSVGQGQGHNFGHRSSRHYLSTCHG 199
            TREV  CHTPC       G +     +WTP     +   H+   R  RH    C G
Sbjct: 2833 TREVRECHTPCATAEPSSGWS-----SWTPWSPCSRSCFHHVDQRGRRHRFRHCEG 2883


>sp|Q980M4|TRM56_SULSO tRNA ribose 2'-O-methyltransferase aTrm56
           OS=Sulfolobus solfataricus GN=SSO0267 PE=3 SV=1
          Length = 160

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = +3

Query: 126 LSYPLLYMASIPET*NEHWTLYVADHGKWINNAAMSDVQSCGLVLDLLIHWGSMQVDFED 305
           + YPLL +    +   E W  + AD+   I N   S+V +  + LD +     + ++FED
Sbjct: 85  IKYPLLIIVGAEKV--EGWYYHNADYNIAIGNQPHSEVAALAIFLDRIYKGRELYMEFED 142


>sp|Q9UQ26|RIMS2_HUMAN Regulating synaptic membrane exocytosis protein
            2 OS=Homo sapiens GN=RIMS2 PE=1 SV=2
          Length = 1411

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = -2

Query: 288  AWTPSGSVGQGQGHNFGHRSSR----HYLSTCHGPPHRASNAHFTFLEWKPCRAVDKRVH 121
            +W+PS    Q +    G R +R    HY +      HR  + H++    + C A D++ +
Sbjct: 1028 SWSPSVPPPQSRNVEQGLRGTRTMTGHYNTISRMDRHRVMDDHYSPDRDRDCEAADRQPY 1087

Query: 120  CRCQST 103
             R +ST
Sbjct: 1088 HRSRST 1093


>sp|Q8INF0|GCY8E_DROME Soluble guanylate cyclase 88E OS=Drosophila
            melanogaster GN=Gyc88E PE=1 SV=3
          Length = 947

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
 Frame = -2

Query: 342  TPCI*RAIVCGPNLQSP-LAWTP-----SGSVGQGQGHNFGHRSSRHYLSTCHGPPHRAS 181
            TP    A+VC    +SP +A  P       S  +G G   G + S   +S    PPHR++
Sbjct: 883  TPTALAAVVCPMRTKSPPMAVAPVMHMVQASTSKGDGQRPGSKDSVSSISLHSPPPHRSN 942

Query: 180  NA 175
            +A
Sbjct: 943  SA 944


>sp|Q8NEC5|CTSR1_HUMAN Cation channel sperm-associated protein 1
           OS=Homo sapiens GN=CATSPER1 PE=1 SV=2
          Length = 780

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
 Frame = -2

Query: 249 HNFGH-RSSRHYLSTCHGPPHRASNAHF--TFLEWKPCRAVDKRVHCRCQSTYHSGLCNH 79
           H  GH R+  HY    HG PH+   +H    F ++   +A+   VH   QS +HS   NH
Sbjct: 32  HRPGHSRALHHYELHHHGVPHQRGESHHPPEFQDFHD-QALSSHVH---QSHHHSEARNH 87

Query: 78  KR 73
            R
Sbjct: 88  GR 89


>sp|Q8X092|ALG11_NEUCR Alpha-1,2-mannosyltransferase alg-11
           OS=Neurospora crassa GN=alg-11 PE=3 SV=1
          Length = 556

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 4/39 (10%)
 Frame = -3

Query: 374 RWAHVKCVGVT--HHAFKEPLYA--DQIFKVHLHGPPVD 270
           RW   KCV  T  H   KE + +  +Q F +HLH P V+
Sbjct: 129 RWPKAKCVVYTGDHDVSKEAILSRVEQRFNIHLHPPTVN 167


>sp|P41913|GDS1_YEAST Protein GDS1 OS=Saccharomyces cerevisiae
           GN=GDS1 PE=1 SV=1
          Length = 522

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 21/75 (28%), Positives = 31/75 (41%)
 Frame = -2

Query: 240 GHRSSRHYLSTCHGPPHRASNAHFTFLEWKPCRAVDKRVHCRCQSTYHSGLCNHKRNSRV 61
           G ++    LS    P   +S +  TF   K         H    +TY +      R S++
Sbjct: 350 GKQTKSQSLSVLSTPKKGSSASLSTFASSKNISPDSSLSHNASSNTYVTAAAAAPRLSKL 409

Query: 60  IPK*HFADNKRSSSD 16
           +PK  F  N RSSS+
Sbjct: 410 LPKNGFKKNSRSSSE 424


>sp|A5GFW5|CASS4_PIG Cas scaffolding protein family member 4 OS=Sus
           scrofa GN=CASS4 PE=3 SV=1
          Length = 784

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 252 GHNFGHRSSRHYLSTCHGPPHRASNAH 172
           G   GHR    Y+S+ H PP+  + +H
Sbjct: 261 GEELGHRGLPRYMSSFHSPPNSIARSH 287


>sp|O13730|MDE6_SCHPO Mei4-dependent protein 6
           OS=Schizosaccharomyces pombe GN=mde6 PE=2 SV=1
          Length = 716

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -3

Query: 230 HRGIIYPLA--MVRHIERPMLISRFWNGSHVEQW-IRECIADVS 108
           +R IIY +      H  RPM +S FW    +++W I+ C+++VS
Sbjct: 582 NRNIIYLMGGNASTHPLRPMKLSDFWKLDILDRWGIKHCLSNVS 625


>sp|Q87EL2|ARGB_XYLFT Acetylglutamate kinase OS=Xylella fastidiosa
           (strain Temecula1 / ATCC 700964) GN=argB PE=3 SV=1
          Length = 421

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = -3

Query: 164 FWNGSHVEQWIRECIADVSQ--PTIRD 90
           FWNG H  Q I++C+A  +Q  PT+ D
Sbjct: 395 FWNGLHHFQQIQQCVAHCTQHPPTLID 421
tr_hit_id A9BZG9
Definition tr|A9BZG9|A9BZG9_DELAS Thiamine pyrophosphate protein central region OS=Delftia acidovorans (strain DSM 14801 / SPH-1)
Align length 27
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917889|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_H05.
         (382 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9BZG9|A9BZG9_DELAS Thiamine pyrophosphate protein central re...    35   2.5  
tr|Q93MP7|Q93MP7_CAMJE CMP-Neu5Ac synthetase OS=Campylobacter je...    34   4.1  
tr|Q6ZQ55|Q6ZQ55_MOUSE MKIAA0751 protein (Fragment) OS=Mus muscu...    34   4.2  
tr|Q0VF51|Q0VF51_MOUSE Rims2 protein OS=Mus musculus GN=Rims2 PE...    34   4.2  
tr|Q6TYQ8|Q6TYQ8_SAISC Sperm ion channel (Fragment) OS=Saimiri s...    33   5.5  
tr|B3M088|B3M088_DROAN GF17780 (Fragment) OS=Drosophila ananassa...    33   7.2  
tr|B3MVQ1|B3MVQ1_DROAN GF22402 OS=Drosophila ananassae GN=GF2240...    33   9.4  

>tr|A9BZG9|A9BZG9_DELAS Thiamine pyrophosphate protein central
           region OS=Delftia acidovorans (strain DSM 14801 / SPH-1)
           GN=Daci_2931 PE=3 SV=1
          Length = 627

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 283 DPQWISRSRTRPQLWTSLIAALFIHLP 203
           DPQW + SR R   W   +AAL +H+P
Sbjct: 367 DPQWTADSRARAAAWAERVAALTLHVP 393


>tr|Q93MP7|Q93MP7_CAMJE CMP-Neu5Ac synthetase OS=Campylobacter
           jejuni GN=neuA1 PE=4 SV=1
          Length = 221

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
 Frame = +3

Query: 27  SVYYLQNVILE*LYCSFCGYIIPNGRLTDICNALSYPLLYMASIPET*NEHWTLYVADHG 206
           SV    N IL+   C+ CG       L  ICN   YP +    +P+T   +  +Y+    
Sbjct: 128 SVSECDNKILKAFVCNDCG------DLAGICND-EYPFMPRQKLPKTYMSNGAIYILKIK 180

Query: 207 KWINNAAMSDVQSCGLVLDLLIHWGSMQVD-FEDLVRIQWLFK 332
           +++NN +    ++   ++D      S+ +D  EDL +++ ++K
Sbjct: 181 EFLNNPSFLQSKTKHFLMD---ESSSLDIDCLEDLKKVEQIWK 220


>tr|Q6ZQ55|Q6ZQ55_MOUSE MKIAA0751 protein (Fragment) OS=Mus musculus
           GN=Rims2 PE=2 SV=1
          Length = 1297

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -2

Query: 288 AWTPSGSVGQG---QGHNFGHRSSRHYLSTCHGPPHRASNAHFTFLEWKPCRAVDKRVHC 118
           +W+PS    Q    QGH  G R++ HY +      HR  + H++    + C A D++ + 
Sbjct: 718 SWSPSAPPPQRNVEQGHR-GTRATGHYNTISRMDRHRVMDDHYSSDRDRDCEAADRQPYH 776

Query: 117 RCQST 103
           R +ST
Sbjct: 777 RSRST 781


>tr|Q0VF51|Q0VF51_MOUSE Rims2 protein OS=Mus musculus GN=Rims2 PE=2
            SV=1
          Length = 1550

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
 Frame = -2

Query: 288  AWTPSGSVGQG---QGHNFGHRSSRHYLSTCHGPPHRASNAHFTFLEWKPCRAVDKRVHC 118
            +W+PS    Q    QGH  G R++ HY +      HR  + H++    + C A D++ + 
Sbjct: 997  SWSPSAPPPQRNVEQGHR-GTRATGHYNTISRMDRHRVMDDHYSSDRDRDCEAADRQPYH 1055

Query: 117  RCQST 103
            R +ST
Sbjct: 1056 RSRST 1060


>tr|Q6TYQ8|Q6TYQ8_SAISC Sperm ion channel (Fragment) OS=Saimiri
           sciureus GN=CATSPER1 PE=4 SV=1
          Length = 387

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 15/29 (51%), Positives = 16/29 (55%)
 Frame = -2

Query: 276 SGSVGQGQGHNFGHRSSRHYLSTCHGPPH 190
           S S   GQGH  GHR S H   + HG PH
Sbjct: 25  SHSSPPGQGHRSGHRGSHHRHKSHHGVPH 53


>tr|B3M088|B3M088_DROAN GF17780 (Fragment) OS=Drosophila ananassae
           GN=GF17780 PE=4 SV=1
          Length = 1275

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 25/99 (25%), Positives = 42/99 (42%)
 Frame = -2

Query: 312 GPNLQSPLAWTPSGSVGQGQGHNFGHRSSRHYLSTCHGPPHRASNAHFTFLEWKPCRAVD 133
           G N  SP +   + + G G  H+  H S  H   T H P H++S+A  +    +  RA  
Sbjct: 435 GHNPSSPRSVRSASTAGGGLHHHHSHHSHGH--GTSHHPHHQSSSAAASSHHQRQQRASS 492

Query: 132 KRVHCRCQSTYHSGLCNHKRNSRVIPK*HFADNKRSSSD 16
                + Q    S + +H  N     + H   ++R+S +
Sbjct: 493 SSASHQQQRYRSSSVESHSSNDSRSTRRHKHRHRRTSDN 531


>tr|B3MVQ1|B3MVQ1_DROAN GF22402 OS=Drosophila ananassae GN=GF22402
           PE=4 SV=1
          Length = 723

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 282 TPSGSVGQGQGHNFGHRSSRHYLSTCHGPPHRASN 178
           T   S G G GH  GH    H+ ++ HG  H+  N
Sbjct: 476 THHSSHGHGHGHGHGHGHGHHHSTSSHGSHHQEKN 510