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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917890
Clone id YMU001_000106_H06
Library
Length 223
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000106_H06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CAGCAAAAAGACCTGCTGGCCCACTTCCAACAACTGTTATCTTTGCATGTGTGTGATGCG
ATACATTGGCACTCAGACCATCATCTTCAGCATACTCTGTCTTCTCTGTCATGCTTACCA
AGGATGCAATCTTGCAGCGACTTACAAGATCGATCACATCAGCTCTATTTGTATCTTCAG
AAATGAACTCTAATTTACCAGGCCTGTTCTTCAAAAACTGGAT
■■Homology search results ■■ -
sp_hit_id Q02XV9
Definition sp|Q02XV9|PROB_LACLS Glutamate 5-kinase OS=Lactococcus lactis subsp. cremoris (strain SK11)
Align length 52
Score (bit) 30.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917890|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_H06.
         (223 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q02XV9|PROB_LACLS Glutamate 5-kinase OS=Lactococcus lactis su...    30   2.8  
sp|P44664|PBP7_HAEIN D-alanyl-D-alanine endopeptidase OS=Haemoph...    30   2.8  
sp|O94225|HOSM_PENCH Homocitrate synthase, mitochondrial OS=Peni...    30   3.7  
sp|Q9Y9Z0|THI4_AERPE Putative thiazole biosynthetic enzyme OS=Ae...    30   4.8  
sp|P65795|PROB_STRA5 Glutamate 5-kinase OS=Streptococcus agalact...    30   4.8  
sp|P65794|PROB_STRA3 Glutamate 5-kinase OS=Streptococcus agalact...    30   4.8  
sp|Q3K396|PROB_STRA1 Glutamate 5-kinase OS=Streptococcus agalact...    30   4.8  
sp|Q9Y823|HOSM_SCHPO Homocitrate synthase, mitochondrial OS=Schi...    30   4.8  
sp|O84101|TRXB_CHLTR Thioredoxin reductase OS=Chlamydia trachoma...    29   6.3  
sp|Q12122|HOSM_YEAST Homocitrate synthase, mitochondrial OS=Sacc...    29   6.3  
sp|P48570|HOSC_YEAST Homocitrate synthase, cytosolic isozyme OS=...    29   6.3  
sp|O97159|CHDM_DROME Chromodomain-helicase-DNA-binding protein M...    29   6.3  
sp|Q9R9J0|MYCB_BACSU Mycosubtilin synthetase subunit B OS=Bacill...    29   8.2  

>sp|Q02XV9|PROB_LACLS Glutamate 5-kinase OS=Lactococcus lactis
           subsp. cremoris (strain SK11) GN=proB PE=3 SV=1
          Length = 270

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/52 (28%), Positives = 29/52 (55%)
 Frame = -1

Query: 160 DVIDLVSRCKIASLVSMTEKTEYAEDDGLSANVSHHTHAKITVVGSGPAGLF 5
           D+I +++     ++  M  +T++ ++D L A VS   HA + ++ S   GLF
Sbjct: 135 DIIPIINENDAIAVDEMDHQTKFGDNDKLGAIVSKLVHADLLIMLSDIDGLF 186


>sp|P44664|PBP7_HAEIN D-alanyl-D-alanine endopeptidase
           OS=Haemophilus influenzae GN=pbpG PE=3 SV=1
          Length = 292

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 70  HSDHHLQHTLSSLSCLPRMQSCSDLQDRSHQLYLY 174
           HSD++  H LS  + + R Q    + +++HQL +Y
Sbjct: 101 HSDNYAAHALSRAAGISRRQFIKKMNEKAHQLGMY 135


>sp|O94225|HOSM_PENCH Homocitrate synthase, mitochondrial
           OS=Penicillium chrysogenum GN=LYS1 PE=1 SV=1
          Length = 474

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/28 (42%), Positives = 23/28 (82%)
 Frame = -1

Query: 223 IQFLKNRPGKLEFISEDTNRADVIDLVS 140
           I+F+K++  ++ F SED+ R+D++DL+S
Sbjct: 184 IEFVKSKGIEIRFSSEDSFRSDLVDLLS 211


>sp|Q9Y9Z0|THI4_AERPE Putative thiazole biosynthetic enzyme
          OS=Aeropyrum pernix GN=APE_2149.1 PE=3 SV=2
          Length = 270

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -1

Query: 82 DGLSANVSHHTHAKITVVGSGPAGLFA 2
          DG  +++  H  + + VVG+GPAGL A
Sbjct: 17 DGFYSSLKKHLRSDVIVVGAGPAGLTA 43


>sp|P65795|PROB_STRA5 Glutamate 5-kinase OS=Streptococcus agalactiae
           serotype V GN=proB PE=3 SV=1
          Length = 267

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -1

Query: 157 VIDLVSRCKIASLVSMTEKTEYAEDDGLSANVSHHTHAKITVVGSGPAGLF 5
           ++ +V+     S+  M  KT++ ++D LSA V+  T A + ++ S   GLF
Sbjct: 133 ILPIVNENDAVSVDEMDHKTKFGDNDRLSAVVAKITKADLLIMLSDIDGLF 183


>sp|P65794|PROB_STRA3 Glutamate 5-kinase OS=Streptococcus agalactiae
           serotype III GN=proB PE=3 SV=1
          Length = 267

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -1

Query: 157 VIDLVSRCKIASLVSMTEKTEYAEDDGLSANVSHHTHAKITVVGSGPAGLF 5
           ++ +V+     S+  M  KT++ ++D LSA V+  T A + ++ S   GLF
Sbjct: 133 ILPIVNENDAVSVDEMDHKTKFGDNDRLSAVVAKITKADLLIMLSDIDGLF 183


>sp|Q3K396|PROB_STRA1 Glutamate 5-kinase OS=Streptococcus agalactiae
           serotype Ia GN=proB PE=3 SV=1
          Length = 267

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 16/51 (31%), Positives = 29/51 (56%)
 Frame = -1

Query: 157 VIDLVSRCKIASLVSMTEKTEYAEDDGLSANVSHHTHAKITVVGSGPAGLF 5
           ++ +V+     S+  M  KT++ ++D LSA V+  T A + ++ S   GLF
Sbjct: 133 ILPIVNENDAVSVDEMDHKTKFGDNDRLSAVVAKITKADLLIMLSDIDGLF 183


>sp|Q9Y823|HOSM_SCHPO Homocitrate synthase, mitochondrial
           OS=Schizosaccharomyces pombe GN=lys4 PE=2 SV=1
          Length = 418

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/38 (34%), Positives = 25/38 (65%)
 Frame = -1

Query: 223 IQFLKNRPGKLEFISEDTNRADVIDLVSRCKIASLVSM 110
           I F+K++  ++ F SED+ R+D++DL+S  K    + +
Sbjct: 152 INFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKIGV 189


>sp|O84101|TRXB_CHLTR Thioredoxin reductase OS=Chlamydia
          trachomatis GN=trxB PE=3 SV=2
          Length = 312

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -1

Query: 52 THAKITVVGSGPAGLFA 2
          THAK+ ++GSGPAG  A
Sbjct: 2  THAKLVIIGSGPAGYTA 18


>sp|Q12122|HOSM_YEAST Homocitrate synthase, mitochondrial
           OS=Saccharomyces cerevisiae GN=LYS21 PE=1 SV=1
          Length = 440

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 12/38 (31%), Positives = 26/38 (68%)
 Frame = -1

Query: 223 IQFLKNRPGKLEFISEDTNRADVIDLVSRCKIASLVSM 110
           I+F+K++  ++ F SED+ R+D++DL++  K    + +
Sbjct: 154 IEFVKSKGIEIRFSSEDSFRSDLVDLLNIYKTVDKIGV 191
tr_hit_id A9TZ17
Definition tr|A9TZ17|A9TZ17_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 68
Score (bit) 36.6
E-value 0.65
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917890|Adiantum capillus-veneris mRNA, clone:
YMU001_000106_H06.
         (223 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TZ17|A9TZ17_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.65 
tr|A6E277|A6E277_9RHOB Putative uncharacterized protein OS=Roseo...    34   4.2  
tr|Q9SUH4|Q9SUH4_ARATH Putative uncharacterized protein T10C21.7...    34   4.2  
tr|Q0WVH3|Q0WVH3_ARATH Putative uncharacterized protein At4g3072...    34   4.2  
tr|B0ABD5|B0ABD5_9CLOT Putative uncharacterized protein OS=Clost...    33   7.1  

>tr|A9TZ17|A9TZ17_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_226816 PE=4 SV=1
          Length = 569

 Score = 36.6 bits (83), Expect = 0.65
 Identities = 25/68 (36%), Positives = 35/68 (51%)
 Frame = -1

Query: 205 RPGKLEFISEDTNRADVIDLVSRCKIASLVSMTEKTEYAEDDGLSANVSHHTHAKITVVG 26
           +P +LEF        DV+ +++R     + S +  TE A +         H  AK+ VVG
Sbjct: 54  KPARLEFSKMPWAPLDVVSVLAREGETRVASSS--TELAAEG--------HEMAKVVVVG 103

Query: 25  SGPAGLFA 2
           SGPAGLFA
Sbjct: 104 SGPAGLFA 111


>tr|A6E277|A6E277_9RHOB Putative uncharacterized protein
           OS=Roseovarius sp. TM1035 GN=RTM1035_02175 PE=4 SV=1
          Length = 213

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = -1

Query: 217 FLKNRPGKLEFISEDTNRADVIDLVSRCKIASLVSMTEKTEYAEDDGLSANVSHHTHAKI 38
           +L+NRP + +  ++  N+A V+DL+ R K       T       + G   N +++ +A  
Sbjct: 28  YLENRPWQFQTTTDRANKAVVLDLIERKKGGFYDGFTTNIHNETNIGSQINCNNNANATG 87

Query: 37  TVVGSGPAG 11
            +  +G AG
Sbjct: 88  NIADNGQAG 96


>tr|Q9SUH4|Q9SUH4_ARATH Putative uncharacterized protein T10C21.70
           (Putative uncharacterized protein AT4g30720)
           OS=Arabidopsis thaliana GN=T10C21.70 PE=2 SV=1
          Length = 761

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
 Frame = -1

Query: 214 LKNRPGKLEFI-SEDTNRADVIDLVSRCKIASLVSMTEKTEYAEDDGLSANVSHH----- 53
           L+ + G +E + +E +   D+I +V+ CK   + S T   EY       +   HH     
Sbjct: 211 LEPKIGLIEHVPTEKSVSGDLISVVNDCK--RINSETASGEYEPQIINGSGDPHHHGGGR 268

Query: 52  THAKITVVGSGPAGLFA 2
           +  KI VVG GP+GLFA
Sbjct: 269 SKPKIAVVGGGPSGLFA 285


>tr|Q0WVH3|Q0WVH3_ARATH Putative uncharacterized protein At4g30720
           (Fragment) OS=Arabidopsis thaliana GN=At4g30720 PE=2
           SV=1
          Length = 714

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
 Frame = -1

Query: 214 LKNRPGKLEFI-SEDTNRADVIDLVSRCKIASLVSMTEKTEYAEDDGLSANVSHH----- 53
           L+ + G +E + +E +   D+I +V+ CK   + S T   EY       +   HH     
Sbjct: 172 LEPKIGLIEHVPTEKSVSGDLISVVNDCK--RINSETASGEYEPQIINGSGDPHHHGGGR 229

Query: 52  THAKITVVGSGPAGLFA 2
           +  KI VVG GP+GLFA
Sbjct: 230 SKPKIAVVGGGPSGLFA 246


>tr|B0ABD5|B0ABD5_9CLOT Putative uncharacterized protein
           OS=Clostridium bartlettii DSM 16795 GN=CLOBAR_01685 PE=4
           SV=1
          Length = 401

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -1

Query: 223 IQFLKNRPGKLEFISEDTNRADVIDLVSRCKIASLVSMTEKTEYAED 83
           IQ +K++  + E I++D   A V+D  S C I   +   E   Y ED
Sbjct: 347 IQIIKDKFKEAEVIAQDDELAVVVDAPSECAINDSIKFIEDNNYCED 393