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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917900
Clone id YMU001_000107_A09
Library
Length 536
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000107_A09.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGACTGCAATGGTCGTTTGCTTCTAGTGGGGAGGGTGGGGAAGCATTCCTCGAAAGAGGA
GGTAGTAATCTTGGAACTCGAATCCTCTGTCAATAGCATTGACAGCTGGAGAGAGGTGGA
CAGAATGCCACAAGACATTTCAAGGGAATTCCTTGGGTGTCTAGTATTTGGTCACTATTA
CTGCATTAGCAGAGGTGACCAGATATTTTTTATAGCATCTTTTAAAGCTCCGATGCTCAT
CTATGACACACTTAAGAGAGCTTGGAGCTGGTGGGCTTGGCCGTTTTACGAAAAGTACGC
AGAAAGATTTCCTATATTTGGTTTTGTGAAGGCGCTACCTGCATTTCCTCCTTTTGGCTT
TGCTTTTGATCTTCACTTCGGCGTTCTTGTGTAGAACGTGCTTAAAGTCAAGGAAGATTC
AATACAGAAGGCAATACTTAAATAAAATGTGTGGCCTTTCTTTGTGAACTATGTATGTAT
AATCTCACCTGGGCTTCAAGCCTGACACTACATATCAAGCGTGACAGTATGTGTCT
■■Homology search results ■■ -
sp_hit_id Q9M310
Definition sp|Q9M310|FBK77_ARATH F-box/Kelch-repeat protein At3g61590 OS=Arabidopsis thaliana
Align length 101
Score (bit) 37.7
E-value 0.035
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917900|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_A09.
         (536 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9M310|FBK77_ARATH F-box/Kelch-repeat protein At3g61590 OS=Ar...    38   0.035
sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis...    36   0.10 
sp|Q9LFV5|FK111_ARATH F-box/Kelch-repeat protein At5g15710 OS=Ar...    36   0.13 
sp|Q9FHS6|FK119_ARATH F-box/Kelch-repeat protein At5g43190 OS=Ar...    32   1.9  
sp|P41951|PQN25_CAEEL Prion-like-(Q/N-rich) domain-bearing prote...    30   9.7  
sp|Q7VCH6|ISPE_PROMA 4-diphosphocytidyl-2-C-methyl-D-erythritol ...    30   9.7  

>sp|Q9M310|FBK77_ARATH F-box/Kelch-repeat protein At3g61590
           OS=Arabidopsis thaliana GN=At3g61590 PE=2 SV=1
          Length = 411

 Score = 37.7 bits (86), Expect = 0.035
 Identities = 27/101 (26%), Positives = 42/101 (41%)
 Frame = +2

Query: 14  RLLLVGRVGKHXXXXXXXXXXXXXXXNSIDSWREVDRMPQDISREFLGCLVFGHYYCISR 193
           RL++VG +GKH                    W E+ +MPQ   R F G   F   +  S 
Sbjct: 302 RLVIVGGIGKHDRPEVIKGIGIWVLKGK--EWVEMAKMPQ---RFFQGFGEFDEVFASSG 356

Query: 194 GDQIFFIASFKAPMLIYDTLKRAWSWWAWPFYEKYAERFPI 316
            D + +I S+ +P L+  T      +W W       ++FP+
Sbjct: 357 TDDLVYIQSYGSPALL--TFDMNLKYWRWSQKCPVTKKFPL 395


>sp|Q39090|UFO_ARATH Protein UNUSUAL FLORAL ORGANS OS=Arabidopsis
           thaliana GN=UFO PE=1 SV=2
          Length = 442

 Score = 36.2 bits (82), Expect = 0.10
 Identities = 19/90 (21%), Positives = 40/90 (44%)
 Frame = +2

Query: 2   DCNGRLLLVGRVGKHXXXXXXXXXXXXXXXNSIDSWREVDRMPQDISREFLGCLVFGHYY 181
           +  GRL+LV  V K                ++  +W E++RMPQ +  +F        + 
Sbjct: 303 ESKGRLILVAAVEKSKLNVPKSLRLWSLQQDNA-TWVEIERMPQPLYTQFAAEEGGKGFE 361

Query: 182 CISRGDQIFFIASFKAPMLIYDTLKRAWSW 271
           C+   + +  +    +  L++D ++++W W
Sbjct: 362 CVGNQEFVMIVLRGTSLQLLFDIVRKSWLW 391


>sp|Q9LFV5|FK111_ARATH F-box/Kelch-repeat protein At5g15710
           OS=Arabidopsis thaliana GN=At5g15710 PE=2 SV=1
          Length = 448

 Score = 35.8 bits (81), Expect = 0.13
 Identities = 25/86 (29%), Positives = 38/86 (44%)
 Frame = +2

Query: 14  RLLLVGRVGKHXXXXXXXXXXXXXXXNSIDSWREVDRMPQDISREFLGCLVFGHYYCISR 193
           RL LVGR+G +               ++  SW E+ RMP    R  L  L    + C  +
Sbjct: 342 RLFLVGRIGLYSTLQSMRIWELD---HTKVSWVEISRMPPKYFRALLR-LSAERFECFGQ 397

Query: 194 GDQIFFIASFKAPMLIYDTLKRAWSW 271
            + I F +  +   L+Y+  K+ WSW
Sbjct: 398 DNLICFTSWNQGKGLLYNVDKKIWSW 423


>sp|Q9FHS6|FK119_ARATH F-box/Kelch-repeat protein At5g43190
           OS=Arabidopsis thaliana GN=At5g43190 PE=2 SV=1
          Length = 403

 Score = 32.0 bits (71), Expect = 1.9
 Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +2

Query: 101 DSWREVDRMPQDISREFLGCLV--FGHYYCISRGDQIFFIASFKAPMLIYDTLKRAWSW 271
           +SW EV+ +P  + R+F       + H YC+   + I         +L +   +R W W
Sbjct: 317 ESWIEVETLPDIVCRKFTSVCYHNYEHVYCLWHKEMICVCCYNWPEILFFHVGRRTWHW 375


>sp|P41951|PQN25_CAEEL Prion-like-(Q/N-rich) domain-bearing protein
           25 OS=Caenorhabditis elegans GN=pqn-25 PE=2 SV=3
          Length = 672

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = -1

Query: 203 SGHLC*CSNSDQILDTQGIPLKCLVAFCPPLSSCQ 99
           S +LC    + Q LD+   P+ CLV+ CP  S CQ
Sbjct: 620 SSNLCSAGQTVQ-LDSSNQPINCLVSTCPNNSFCQ 653


>sp|Q7VCH6|ISPE_PROMA 4-diphosphocytidyl-2-C-methyl-D-erythritol
           kinase OS=Prochlorococcus marinus GN=ispE PE=3 SV=1
          Length = 319

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = +2

Query: 104 SWREVDRMPQDISREFLGCLVFGHYYCISRGDQIFFIASFK---APMLIYDTLKRAWSWW 274
           S ++++++  ++  +   CL  G  +C  RG+ +  I   K   A +L+ D L    + W
Sbjct: 134 SEKQLEKLGSELGSDVPFCLRGGTQFCFGRGESLEMIPEIKQSMAVVLVKDPLVEVSTPW 193

Query: 275 AWPFYEKYAE 304
           A   Y K+ E
Sbjct: 194 A---YSKFKE 200
tr_hit_id A9RIS8
Definition tr|A9RIS8|A9RIS8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 90
Score (bit) 49.3
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917900|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_A09.
         (536 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RIS8|A9RIS8_PHYPA Predicted protein OS=Physcomitrella paten...    49   1e-04
tr|A9SVS4|A9SVS4_PHYPA Predicted protein OS=Physcomitrella paten...    46   0.001
tr|A9SK59|A9SK59_PHYPA Predicted protein (Fragment) OS=Physcomit...    46   0.001
tr|B8LMU8|B8LMU8_PICSI Putative uncharacterized protein OS=Picea...    45   0.002
tr|A7QNE5|A7QNE5_VITVI Chromosome chr2 scaffold_132, whole genom...    44   0.005
tr|A9SDA0|A9SDA0_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.007
tr|Q9ZTZ0|Q9ZTZ0_PEA Stamina pistilloidia OS=Pisum sativum GN=St...    43   0.012
tr|A9T141|A9T141_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.015
tr|A9TB91|A9TB91_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.020
tr|Q84L18|Q84L18_PEA Stp-h4 OS=Pisum sativum PE=4 SV=1                 42   0.026
tr|A9TDG5|A9TDG5_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.026
tr|A9TY82|A9TY82_PHYPA Predicted protein OS=Physcomitrella paten...    41   0.045
tr|A7PZQ6|A7PZQ6_VITVI Chromosome chr15 scaffold_40, whole genom...    40   0.076
tr|B6TJU9|B6TJU9_MAIZE Kelch motif family protein OS=Zea mays PE...    40   0.100
tr|A9TXI0|A9TXI0_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.100
tr|A9TTQ6|A9TTQ6_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.100
tr|Q84JN4|Q84JN4_PEA Stp-h2 (Stp-h3) OS=Pisum sativum PE=4 SV=1        39   0.13 
tr|Q7XR72|Q7XR72_ORYSJ Os04g0668600 protein OS=Oryza sativa subs...    38   0.29 
tr|Q6QVX3|Q6QVX3_VEROI Fimbriata (Fragment) OS=Verbena officinal...    38   0.29 
tr|Q5BMD2|Q5BMD2_MEDTR Stamina pistilloidia (Fragment) OS=Medica...    38   0.29 
tr|B8AW14|B8AW14_ORYSI Putative uncharacterized protein OS=Oryza...    38   0.29 
tr|A3AYF5|A3AYF5_ORYSJ Putative uncharacterized protein OS=Oryza...    38   0.29 
tr|Q1KUZ9|Q1KUZ9_9ROSI Putative uncharacterized protein OS=Cleom...    37   0.50 
tr|Q84UE8|Q84UE8_LOTJA Proliferating floral organs protein (UFO-...    37   0.85 
tr|B4FF73|B4FF73_MAIZE F-box domain containing protein OS=Zea ma...    37   0.85 
tr|B6CNU4|B6CNU4_PETHY DOUBLE TOP OS=Petunia hybrida GN=DOT PE=2...    36   1.1  
tr|A7PAG5|A7PAG5_VITVI Chromosome chr14 scaffold_9, whole genome...    36   1.1  
tr|A5BFR1|A5BFR1_VITVI Putative uncharacterized protein OS=Vitis...    36   1.1  
tr|Q5SMS6|Q5SMS6_ORYSJ Fimbriata-like (Os01g0659900 protein) OS=...    36   1.4  
tr|B8A6W4|B8A6W4_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.4  

>tr|A9RIS8|A9RIS8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_114815 PE=4 SV=1
          Length = 362

 Score = 49.3 bits (116), Expect = 1e-04
 Identities = 31/90 (34%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
 Frame = +2

Query: 5   CNGRLLLVGRVGKHXXXXXXXXXXXXXXXNSIDSWREVDRMPQDISREFLGCLVFGHYYC 184
           C  RLL+VG + KH                S  +W E+ RMP  + + FL     G + C
Sbjct: 248 CQRRLLMVGGLKKHAIPKNIRIWELE---QSTMNWVEIVRMPHTLCKRFLKDSRNGDFMC 304

Query: 185 ISRGDQIFFIASFKAP-MLIYDTLKRAWSW 271
           +   D I  + S+K P  LIYD  KR+W W
Sbjct: 305 VGHNDLIC-LTSYKCPHALIYDFSKRSWRW 333


>tr|A9SVS4|A9SVS4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166827 PE=4 SV=1
          Length = 625

 Score = 46.2 bits (108), Expect = 0.001
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
 Frame = +2

Query: 98  IDSWREVDRMPQDISREFLGCLV-FGHYYCISRGDQIFFIASFKA---PMLIYDTLKRAW 265
           I  W EV+RMP  + REF   +V      C S GD IFF  S      P  ++D   R W
Sbjct: 533 IYEWVEVERMPPQMCREFENLMVQTKPLCCFSTGDLIFFTISSNTTYYPGAVFDLKNRVW 592

Query: 266 SWW 274
           +WW
Sbjct: 593 TWW 595


>tr|A9SK59|A9SK59_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_44026 PE=4 SV=1
          Length = 330

 Score = 45.8 bits (107), Expect = 0.001
 Identities = 31/90 (34%), Positives = 41/90 (45%), Gaps = 1/90 (1%)
 Frame = +2

Query: 5   CNGRLLLVGRVGKHXXXXXXXXXXXXXXXNSIDSWREVDRMPQDISREFLGCLVFGHYYC 184
           C  RLL+VG + K                 S   W EV RMP  + + FL     G + C
Sbjct: 241 CQRRLLMVGGLKKRTSPKNIRIWELE---QSTMMWVEVVRMPHTLCKHFLKDSRNGDFMC 297

Query: 185 ISRGDQIFFIASFKAPM-LIYDTLKRAWSW 271
           +   + I  I S+K P+ LIYD  KR+W W
Sbjct: 298 VGHNNLIC-ITSYKCPLALIYDFSKRSWRW 326


>tr|B8LMU8|B8LMU8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 416

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 10/118 (8%)
 Frame = +2

Query: 2   DCNGRLLLVGRVGKHXXXXXXXXXXXXXXXNSI--------DSWREVDRMPQDISREFLG 157
           +C GRLL++GR+                    I          W E+ R+P +I R+F  
Sbjct: 290 ECRGRLLMIGRLSNMDQISPAADQTESNIPRIIIWELDVRHKEWVEIVRVPTEICRDFSV 349

Query: 158 CL-VFGHYYCISRGDQIFFIASFKAPMLIYDTLKRAWSWW-AWPFYEKYAERFPIFGF 325
            L ++  + C   G+ I+        +L+YD  K  W W  + PF+ +  + F + GF
Sbjct: 350 PLEIYAPFVCSGLGNHIYITTHRNPNVLVYDLWKNTWQWLPSDPFFPRRRD-FHLLGF 406


>tr|A7QNE5|A7QNE5_VITVI Chromosome chr2 scaffold_132, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00002498001
           PE=4 SV=1
          Length = 406

 Score = 43.9 bits (102), Expect = 0.005
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
 Frame = +2

Query: 8   NGRLLLVGRVGKHXXXXXXXXXXXXXXXNSIDSWREVDRMPQDISREFLGCLVFGHYYCI 187
           NG+L++VG +GKH                    W EV RMP    R F G   F   +  
Sbjct: 295 NGKLVMVGGIGKHDRPGIIKGIGIWALKGR--DWEEVSRMPH---RFFQGFGEFDDVFAS 349

Query: 188 SRGDQIFFIASFKAP-MLIYDTLKRAWSW 271
           S  + + +I S+ AP +L++D   R W W
Sbjct: 350 SGFNSLVYIQSYGAPALLVFDMNLRQWKW 378


>tr|A9SDA0|A9SDA0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164284 PE=4 SV=1
          Length = 648

 Score = 43.5 bits (101), Expect = 0.007
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
 Frame = +2

Query: 107 WREVDRMPQDISREFLGCLVFGH-YYCISRGDQIFFIASFK--APMLIYDTLKRAWSWW 274
           W+E++RMP  + +EF   +V      C   GD IF         P L+YD  +R W+WW
Sbjct: 560 WQELERMPLQLCKEFEAKMVPSKPLSCFGTGDSIFLSIPTNDYMPALMYDLQRRTWNWW 618


>tr|Q9ZTZ0|Q9ZTZ0_PEA Stamina pistilloidia OS=Pisum sativum GN=Stp
           PE=2 SV=1
          Length = 443

 Score = 42.7 bits (99), Expect = 0.012
 Identities = 29/108 (26%), Positives = 45/108 (41%)
 Frame = +2

Query: 2   DCNGRLLLVGRVGKHXXXXXXXXXXXXXXXNSIDSWREVDRMPQDISREFLGCLVFGHYY 181
           +CNG+LLLV  V K+                  + W E +RMPQ +  +F        + 
Sbjct: 314 ECNGKLLLVAAVEKNKLNVPKNLRVWSLQGCG-NVWVETERMPQQLYVQFADMENGNGFE 372

Query: 182 CISRGDQIFFIASFKAPMLIYDTLKRAWSWWAWPFYEKYAERFPIFGF 325
           C+  G+ I  +       L+YD  ++ W W     Y  Y + F + GF
Sbjct: 373 CVGNGEFIVIMIKGSDKGLVYDIGRKRWQWIPPCPYAGY-DGFELHGF 419


>tr|A9T141|A9T141_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_234671 PE=4 SV=1
          Length = 462

 Score = 42.4 bits (98), Expect = 0.015
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
 Frame = +2

Query: 2   DCNGRLLLVGRVGKHXXXXXXXXXXXXXXXNSIDSWREVDRMPQDISREFLGCL-VFGHY 178
           +C GRLL+VG  G                   +  W E++RMP+ + REF+  L    H+
Sbjct: 309 ECQGRLLMVG--GCEEGNFLGIRIWELERIKMV--WVEIERMPRKLRREFVEMLRPSRHF 364

Query: 179 YCISRGDQIFFIASFKAPMLIYDTLKRAWSW 271
           +    G+ I    S  +P  ++D   R W W
Sbjct: 365 FGFGNGNIICLTISESSPAAVFDLEDRTWKW 395


>tr|A9TB91|A9TB91_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_90500 PE=4 SV=1
          Length = 371

 Score = 42.0 bits (97), Expect = 0.020
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
 Frame = +2

Query: 107 WREVDRMPQDISREFLGCLVFGH-YYCISRGDQIFFIASFK--APMLIYDTLKRAWSWW 274
           W E++RMP  + +EF   +V      C   GD IF         P L++D  +R W WW
Sbjct: 283 WEELERMPSQLCKEFEAKMVPSKPLSCFGTGDSIFLSIPTNNYMPALMFDLKRRTWDWW 341


>tr|Q84L18|Q84L18_PEA Stp-h4 OS=Pisum sativum PE=4 SV=1
          Length = 443

 Score = 41.6 bits (96), Expect = 0.026
 Identities = 29/108 (26%), Positives = 43/108 (39%)
 Frame = +2

Query: 2   DCNGRLLLVGRVGKHXXXXXXXXXXXXXXXNSIDSWREVDRMPQDISREFLGCLVFGHYY 181
           +CNG+LLLV  V K                     W E +RMPQ +  +F        + 
Sbjct: 314 ECNGKLLLVAAVEKSKLNVPKSLRVWSLQGCG-SVWVETERMPQQLYVQFADMENGNGFE 372

Query: 182 CISRGDQIFFIASFKAPMLIYDTLKRAWSWWAWPFYEKYAERFPIFGF 325
           C+  G+ I  +       L+YD  ++ W W     Y  Y + F + GF
Sbjct: 373 CVGNGEFIVIMIKGSDKGLVYDIGRKRWQWIPPCPYAGY-DGFELHGF 419