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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917902
Clone id YMU001_000107_B02
Library
Length 552
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000107_B02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CTTTATTAGTTGGGCACCCTTGGCCTTTTAGATGACCTCAAACAGACCCCGAACAGGCCA
AAAACTGACCTCGTAGTGCATAGTTGTCACCTTTTTGCATCATCCGCACACCTGGCACTC
AGTTTTTCCAAATAATGCATCCCGCAACCACATGAAGTGGACCCAAAAAGTGGTCCTCAT
GATGACCTTTCTGCATAAGTATCACAAGAAAACACCCACGTCGTGTCTGTACTCATCCGC
GTGCAAGTATTGACCCCATTCGACGTCCTGACGCCACTAGATGCCATCTGACGCACCTGC
TTACCTCATGTCATCGGCCCACGGATAGCTTCCTCGAGAAGTTTTAAGTGCTACCAACTC
CTCATTATTGTAGAAAAAACACACTGGTATTGGTAATAGTGAAAATCGATGCACTATGTA
CATGGTGTCCTACCTGTACACACGTGGGCCCCACGTAACCACCTGGCTATGGAAATTGGG
CAATCCTTTATTTGATGCACCATGCATGTATATGTACATATGCGCAATCCCTTGCTTGAA
AAAATTCCTGCG
■■Homology search results ■■ -
sp_hit_id Q6PL45
Definition sp|Q6PL45|CP079_HUMAN BRICHOS domain-containing protein C16orf79 OS=Homo sapiens
Align length 55
Score (bit) 29.6
E-value 9.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917902|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_B02.
         (538 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6PL45|CP079_HUMAN BRICHOS domain-containing protein C16orf79...    30   9.7  

>sp|Q6PL45|CP079_HUMAN BRICHOS domain-containing protein C16orf79
           OS=Homo sapiens GN=C16orf79 PE=2 SV=2
          Length = 260

 Score = 29.6 bits (65), Expect = 9.7
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +3

Query: 351 LPTPHYCRKNTLVLVIVKIDALCTWCPTCTHVGPT*PPGYGNWAILYLMHHACIC 515
           LP+PH  R N  +LV V  +A          +  T P    +WA+L+     CIC
Sbjct: 70  LPSPHMPRPNQTILVDVARNA--------ATITVTPPQSNHSWAVLFDGQSGCIC 116
tr_hit_id Q8MEZ6
Definition tr|Q8MEZ6|Q8MEZ6_9ASTR Maturase K (Fragment) OS=Siloxerus pygmaeus
Align length 47
Score (bit) 33.5
E-value 7.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917902|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_B02.
         (538 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8MEZ6|Q8MEZ6_9ASTR Maturase K (Fragment) OS=Siloxerus pygmae...    33   7.3  

>tr|Q8MEZ6|Q8MEZ6_9ASTR Maturase K (Fragment) OS=Siloxerus pygmaeus
           GN=matK PE=3 SV=1
          Length = 427

 Score = 33.5 bits (75), Expect = 7.3
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +2

Query: 92  FLHHPHTWHSVFPNNASRNHMKWTQKVVLMMTFLHKYHKKTPTSCLY 232
           FLH  H W S+  +N+ +    ++++   +  FL+ +H +   SC +
Sbjct: 179 FLHECHNWDSLITSNSKKASSSFSKRNXRLFFFLYTFHVREYESCFF 225