BP917919
Clone id YMU001_000107_C12
Library
Length 219
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000107_C12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GCGATCATACTAGAGAGAGCATATGCCTCTTTAAGATTTCCAGACAGGCCAGTTACCATT
AATTGCTGCCCAGCAGAAGCTGCAAGCAAAAGAGGGAAGGTTGCCAGCAAGACCAAAGCC
AGTCTCCACTGCAATGACAAGGCCGATAACACAAAGCTGTGACAAAGCCAGTTGAATTCT
GCAAAATATAATGCCACCCTATCACCAATGGCTGCCCGT
■■Homology search results ■■ -
sp_hit_id P60570
Definition sp|P60570|PANX1_RAT Pannexin-1 OS=Rattus norvegicus
Align length 61
Score (bit) 30.4
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917919|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_C12.
(204 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P60570|PANX1_RAT Pannexin-1 OS=Rattus norvegicus GN=Panx1 PE=... 30 2.9
sp|Q5REE3|PANX1_PONAB Pannexin-1 OS=Pongo abelii GN=PANX1 PE=2 SV=1 30 2.9
sp|Q9JIP4|PANX1_MOUSE Pannexin-1 OS=Mus musculus GN=Panx1 PE=1 SV=2 30 2.9
sp|Q96RD7|PANX1_HUMAN Pannexin-1 OS=Homo sapiens GN=PANX1 PE=2 SV=3 30 2.9
sp|Q9H936|GHC1_HUMAN Mitochondrial glutamate carrier 1 OS=Homo s... 29 6.4

>sp|P60570|PANX1_RAT Pannexin-1 OS=Rattus norvegicus GN=Panx1 PE=1
SV=1
Length = 426

Score = 30.4 bits (67), Expect = 2.9
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Frame = -1

Query: 195 GIIFCRIQLALSQLCVIGLVIAVETGFGLAGNLPSFACSFCWAAI---------NGNWPV 43
G+ I LA +Q IG I+ + + +F S+CWAA+ +GN P+
Sbjct: 44 GLPLLLISLAFAQEISIGTQISCFSPSSFSWRQAAFVDSYCWAAVQQKNSLQSESGNLPL 103

Query: 42 W 40
W
Sbjct: 104 W 104


>sp|Q5REE3|PANX1_PONAB Pannexin-1 OS=Pongo abelii GN=PANX1 PE=2 SV=1
Length = 426

Score = 30.4 bits (67), Expect = 2.9
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Frame = -1

Query: 195 GIIFCRIQLALSQLCVIGLVIAVETGFGLAGNLPSFACSFCWAAI---------NGNWPV 43
G+ I LA +Q IG I+ + + +F S+CWAA+ +GN P+
Sbjct: 44 GLPLLLISLAFAQEISIGTQISCFSPSSFSWRQAAFVDSYCWAAVQQKNSLQSESGNLPL 103

Query: 42 W 40
W
Sbjct: 104 W 104


>sp|Q9JIP4|PANX1_MOUSE Pannexin-1 OS=Mus musculus GN=Panx1 PE=1 SV=2
Length = 426

Score = 30.4 bits (67), Expect = 2.9
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Frame = -1

Query: 195 GIIFCRIQLALSQLCVIGLVIAVETGFGLAGNLPSFACSFCWAAI---------NGNWPV 43
G+ I LA +Q IG I+ + + +F S+CWAA+ +GN P+
Sbjct: 44 GLPLLLISLAFAQEISIGTQISCFSPSSFSWRQAAFVDSYCWAAVQQKSSLQSESGNLPL 103

Query: 42 W 40
W
Sbjct: 104 W 104


>sp|Q96RD7|PANX1_HUMAN Pannexin-1 OS=Homo sapiens GN=PANX1 PE=2 SV=3
Length = 426

Score = 30.4 bits (67), Expect = 2.9
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 9/61 (14%)
Frame = -1

Query: 195 GIIFCRIQLALSQLCVIGLVIAVETGFGLAGNLPSFACSFCWAAI---------NGNWPV 43
G+ I LA +Q IG I+ + + +F S+CWAA+ +GN P+
Sbjct: 44 GLPLLLISLAFAQEISIGTQISCFSPSSFSWRQAAFVDSYCWAAVQQKNSLQSESGNLPL 103

Query: 42 W 40
W
Sbjct: 104 W 104


>sp|Q9H936|GHC1_HUMAN Mitochondrial glutamate carrier 1 OS=Homo
sapiens GN=SLC25A22 PE=1 SV=1
Length = 323

Score = 29.3 bits (64), Expect = 6.4
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 12/44 (27%)
Frame = +2

Query: 62 IAAQQKLQAKEGRL------------PARPKPVSTAMTRPITQS 157
IAAQ+K+ A +G+L PA P+P +T +TR + +S
Sbjct: 137 IAAQRKILAAQGQLSAQGGAQPSVEAPAAPRPTATQLTRDLLRS 180


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917919|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_C12.
(204 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******