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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917921
Clone id YMU001_000107_D03
Library
Length 261
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000107_D03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
TGTATCTTGCATTCTCCTCTTCCTGTAACATCCGCGCCAAGTGTGCATCATCCAGAGCAA
AATTTCCTTCATCAGCTTCCAGACCATAATCCTCCTGTAGAAACTTTGCCAGGATTTCAT
CTTCTTCAATCTGCCTAGCCCTGTTAGCAGCAGCAGACACAATTCTCTCAGCAGTTGCGC
TGCTGCTTGGACACTCCAAACTATCTACATCGATAGGCCGTTCCATTCCTCCAAATGATG
ACCCACTTGTACTACCATCTC
■■Homology search results ■■ -
sp_hit_id P70348
Definition sp|P70348|GCM1_MOUSE Chorion-specific transcription factor GCMa OS=Mus musculus
Align length 41
Score (bit) 32.3
E-value 0.77
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917921|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_D03.
         (261 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P70348|GCM1_MOUSE Chorion-specific transcription factor GCMa ...    32   0.77 
sp|Q13127|REST_HUMAN RE1-silencing transcription factor OS=Homo ...    30   3.7  
sp|Q7M3Y3|TNNI_CHLNI Troponin I OS=Chlamys nipponensis akazara P...    30   4.8  
sp|Q93971|TRPG_CAEEL Transient receptor potential channel OS=Cae...    29   6.3  
sp|Q8IN94|OSA_DROME Trithorax group protein osa OS=Drosophila me...    29   8.5  

>sp|P70348|GCM1_MOUSE Chorion-specific transcription factor GCMa
           OS=Mus musculus GN=Gcm1 PE=1 SV=1
          Length = 436

 Score = 32.3 bits (72), Expect = 0.77
 Identities = 19/41 (46%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 16  PLPVTSAPSVHHPEQNFLHQLPDHNP--PVETLPGFHLLQS 132
           PLPV S P  + P QN L  LP   P  P    PG H L S
Sbjct: 317 PLPVASWPYDYFPSQNSLEHLPQQVPSEPPAAQPGCHPLWS 357


>sp|Q13127|REST_HUMAN RE1-silencing transcription factor OS=Homo
            sapiens GN=REST PE=1 SV=2
          Length = 1097

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 2/85 (2%)
 Frame = -3

Query: 253  STSGSSFGGMERPIDVDSLECPSSSATAERIVSAAANRARQIEEDEILAKFLQEDYGLEA 74
            ST       M  P  V+  E  S +A A    + AAN +++I+EDE +      D     
Sbjct: 964  STVEEPVSPMLPPSAVEEREAVSKTALASPPATMAANESQEIDEDEGIHSHEGSDLSDNM 1023

Query: 73   DEGNFALDDA--HLARMLQEEENAR 5
             EG+   DD+  H AR + +E + +
Sbjct: 1024 SEGS---DDSGLHGARPVPQESSRK 1045


>sp|Q7M3Y3|TNNI_CHLNI Troponin I OS=Chlamys nipponensis akazara PE=1
           SV=2
          Length = 292

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
 Frame = -3

Query: 187 SSSATAERIVSAAAN--RARQIEEDEILAKFLQEDYGLEADEGNFALDDAHLARMLQEEE 14
           S SA AE    A A   R +Q EE+E  A+  +E+Y  + +E         L R  QEEE
Sbjct: 45  SYSAPAEPAYDAEAENRRRQQQEEEEAAARAAEEEYNRQQEE---------LRRQRQEEE 95

Query: 13  NAR 5
             R
Sbjct: 96  RQR 98


>sp|Q93971|TRPG_CAEEL Transient receptor potential channel
            OS=Caenorhabditis elegans GN=gon-2 PE=1 SV=4
          Length = 2032

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 162  ILSAVALLLGHSKLSTSIGRSIPPNDDPLV 251
            IL  V  LL  +   T+IGR   P+ DPLV
Sbjct: 1708 ILECVRALLNQNNAPTAIGRCFSPSPDPLV 1737


>sp|Q8IN94|OSA_DROME Trithorax group protein osa OS=Drosophila
            melanogaster GN=osa PE=1 SV=1
          Length = 2716

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 3/34 (8%)
 Frame = +1

Query: 22   PVTSAPSVH---HPEQNFLHQLPDHNPPVETLPG 114
            P+   P  H   HP Q+  HQ P   PP +T PG
Sbjct: 1722 PLQQQPPSHQHPHPHQHPQHQHPHQMPPNQTAPG 1755
tr_hit_id A5B191
Definition tr|A5B191|A5B191_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 92
Score (bit) 45.1
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917921|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_D03.
         (261 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5B191|A5B191_VITVI Putative uncharacterized protein OS=Vitis...    45   0.002
tr|A9TPP1|A9TPP1_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.003
tr|A2DVR7|A2DVR7_TRIVA Putative uncharacterized protein OS=Trich...    34   3.2  
tr|Q1LVF9|Q1LVF9_DANRE Novel kinase domain containing protein (F...    33   7.1  
tr|B8BYA7|B8BYA7_THAPS Predicted protein OS=Thalassiosira pseudo...    33   7.1  
tr|Q9MAS8|Q9MAS8_ARATH F13M7.22 protein OS=Arabidopsis thaliana ...    33   9.3  
tr|Q93XZ6|Q93XZ6_ARATH Putative uncharacterized protein At1g0479...    33   9.3  

>tr|A5B191|A5B191_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037878 PE=4 SV=1
          Length = 625

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 36/92 (39%), Positives = 46/92 (50%), Gaps = 8/92 (8%)
 Frame = -3

Query: 256 GSTSGSSFGG---MERPIDVDSLECPSSSATAERIVSAAAN-----RARQIEEDEILAKF 101
           GST   S  G   ME  I++D  + P     A R   +  N     RARQIE DEILA+ 
Sbjct: 487 GSTRSQSHHGQGVMEPVIEIDE-QSPEIRHVASRNGGSMNNDDSDARARQIEADEILARE 545

Query: 100 LQEDYGLEADEGNFALDDAHLARMLQEEENAR 5
           LQE    E         DAH+A+MLQ++E  +
Sbjct: 546 LQEQLYHEMPVDGGVGIDAHIAQMLQQQEQVQ 577


>tr|A9TPP1|A9TPP1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171239 PE=4 SV=1
          Length = 693

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 24/47 (51%), Positives = 31/47 (65%)
 Frame = -3

Query: 148 ANRARQIEEDEILAKFLQEDYGLEADEGNFALDDAHLARMLQEEENA 8
           A RARQ+ EDE +A+ LQE + LE   G+    D   ARMLQ+EEN+
Sbjct: 426 AERARQLSEDERVARELQEAFALEDMGGSQPPTDEMFARMLQDEENS 472


>tr|A2DVR7|A2DVR7_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_210100 PE=4 SV=1
          Length = 143

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 19  LPVTSAPSVHHPEQNFLHQLPDHNPPVETLPGFHL 123
           LP+   PS+H+P+Q F   +P   P +E++   H+
Sbjct: 99  LPIAPQPSIHYPQQTFTSNIPHSLPTLESVGANHI 133


>tr|Q1LVF9|Q1LVF9_DANRE Novel kinase domain containing protein
           (Fragment) OS=Danio rerio GN=mylk4 PE=4 SV=1
          Length = 640

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = -3

Query: 220 RPIDVDSLECPSSSATAERIVSAAANRARQIEEDEILAKFLQEDYGLEADE 68
           R  +   L  P+SS   ++I++A   R  + EE+E   K  +E+ GLEA E
Sbjct: 287 RLTEESQLAAPTSSGQNDKIITATPERVEEEEEEEKELKEEEEEAGLEAAE 337


>tr|B8BYA7|B8BYA7_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_3621 PE=4 SV=1
          Length = 815

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 18/54 (33%), Positives = 32/54 (59%)
 Frame = -3

Query: 169 ERIVSAAANRARQIEEDEILAKFLQEDYGLEADEGNFALDDAHLARMLQEEENA 8
           ERI +A A+  R++ E++  A+  Q +  L+ ++   A   A   RML+EE++A
Sbjct: 526 ERIAAAKADEERRLREEQEAAEKAQVELELKHEQERIAAAKADEERMLREEQDA 579


>tr|Q9MAS8|Q9MAS8_ARATH F13M7.22 protein OS=Arabidopsis thaliana
           GN=F13M7.22 PE=4 SV=1
          Length = 716

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -3

Query: 136 RQIEEDEILAKFLQEDYGLEADEGNFALDDAHLARMLQEEENA 8
           RQIE DEILA+ LQE    E         D  +AR +++EEN+
Sbjct: 401 RQIEADEILARELQEQLYREESLIRHEQIDEIIARSMEQEENS 443


>tr|Q93XZ6|Q93XZ6_ARATH Putative uncharacterized protein At1g04790;
           F13M7.22 (At1g04790) OS=Arabidopsis thaliana
           GN=At1g04790/F13M7.22 PE=2 SV=1
          Length = 634

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -3

Query: 136 RQIEEDEILAKFLQEDYGLEADEGNFALDDAHLARMLQEEENA 8
           RQIE DEILA+ LQE    E         D  +AR +++EEN+
Sbjct: 391 RQIEADEILARELQEQLYREESLIRHEQIDEIIARSMEQEENS 433