BP917924 |
Clone id |
YMU001_000107_D06 |
Library |
YMU01 |
Length |
516 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000107_D06. |
Accession |
BP917924 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GAGCTAGGAAAGATCAAACAAAAGAAGACCAGTGTCAGGCAATTTGTGGAAGAGATCAAG GACTTGGCCAGACAACTATCTTCACCATTGGGGCACAAAAGTCTCAGGGCATGGTTCCTC AATGGAAACTCATTAAAAGGGGTGGCGAATCAGAGATTACCAACCCAAAGGGAAAGTGGG AGAGTAATCACTCGACCGGTGAGTGTGTCAAGTGCGATTACTGCGAGCGCAGGGGGAAGA GTGCCAGTTAGGTTATTAACACTGACGGTTAGGATAGCCATATCGACAGCAATACAGGCA GCCCAGGATAATCTACAAATACTAGGCAAAGATCATACCCAAGGCCACGACCCAAGAGAT TTAGTCGCTGGAATGTGGGAAGGAGGGCCAGTTTGCAAGGGAGTGGACGGAAGCACTGGT CCACCAGCACTCCAACAACCCCAGTGTAAACCTATTGCTTGCAGAGGTAGCAGTTGTAAC CAGAGCCAAAGCCAGAGAGCGTCTAGAAAAAACAGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q4KM92 |
Definition |
sp|Q4KM92|TRUA_RAT tRNA pseudouridine synthase A OS=Rattus norvegicus |
Align length |
42 |
Score (bit) |
32.7 |
E-value |
1.0 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A6WE23 |
Definition |
tr|A6WE23|A6WE23_KINRD Putative transcriptional regulator, GntR family OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) |
Align length |
99 |
Score (bit) |
38.9 |
E-value |
0.15 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917924|Adiantum capillus-veneris mRNA, clone: YMU001_000107_D06. (516 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A6WE23|A6WE23_KINRD Putative transcriptional regulator, GntR ... 39 0.15 tr|A7F0B3|A7F0B3_SCLS1 Putative uncharacterized protein OS=Scler... 39 0.15 tr|Q97DT5|Q97DT5_CLOAB Pectate lyase OS=Clostridium acetobutylic... 37 0.75 tr|A9WHX1|A9WHX1_CHLAA Putative uncharacterized protein OS=Chlor... 36 1.3 tr|B2QRB1|B2QRB1_9CHLR Putative uncharacterized protein OS=Chlor... 36 1.3 tr|A0ACQ7|A0ACQ7_STRAM Putative peptide synthetase OS=Streptomyc... 36 1.3 tr|A8KXM6|A8KXM6_FRASN Diguanylate cyclase/phosphodiesterase wit... 35 1.7 tr|A7D110|A7D110_9EURY Preprotein translocase secY subunit OS=Ha... 35 1.7 tr|B6X8G8|B6X8G8_9ENTR Putative uncharacterized protein OS=Provi... 35 2.9 tr|B6APE8|B6APE8_9BACT Rare lipoprotein A family protein OS=Lept... 34 3.8 tr|A3EVU4|A3EVU4_9BACT Lipoprotein OS=Leptospirillum sp. Group I... 34 3.8 tr|B4KPV4|B4KPV4_DROMO GI18644 OS=Drosophila mojavensis GN=GI186... 34 3.8 tr|Q66QA2|Q66QA2_ORYSI Putative leucine-rich repeat receptor-lik... 34 4.9 tr|Q00SV3|Q00SV3_OSTTA Possible site-specific DNA-methyltransfer... 34 4.9 tr|B8AHY6|B8AHY6_ORYSI Putative uncharacterized protein OS=Oryza... 34 4.9 tr|A7P098|A7P098_VITVI Chromosome chr6 scaffold_3, whole genome ... 34 4.9 tr|A2X108|A2X108_ORYSI Putative uncharacterized protein OS=Oryza... 34 4.9 tr|B6ITL5|B6ITL5_RHOCS Glycosyl transferase, family 39 OS=Rhodos... 33 6.4 tr|A5EI33|A5EI33_BRASB Putative uncharacterized protein OS=Brady... 33 6.4 tr|B8M7R4|B8M7R4_9EURO Protein kinase, putative OS=Talaromyces s... 33 6.5 tr|Q3IZ23|Q3IZ23_RHOS4 Putative uncharacterized protein OS=Rhodo... 33 8.3 tr|A3PN74|A3PN74_RHOS1 Putative uncharacterized protein OS=Rhodo... 33 8.3 tr|Q8W5K7|Q8W5K7_ORYSA Putative uncharacterized protein OSJNBa00... 33 8.3 tr|Q7XH57|Q7XH57_ORYSJ Os10g0119200 protein OS=Oryza sativa subs... 33 8.3 tr|A2Z4K5|A2Z4K5_ORYSI Putative uncharacterized protein OS=Oryza... 33 8.3
>tr|A6WE23|A6WE23_KINRD Putative transcriptional regulator, GntR family OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=Krad_3599 PE=4 SV=1 Length = 470
Score = 38.9 bits (89), Expect = 0.15 Identities = 31/99 (31%), Positives = 40/99 (40%) Frame = +1
Query: 91 GHKSLRAWFLNGNSLKGVANQRLPTQRESGRVITRPVSVSSAITASAGGRVPVRLLTLTV 270 GH LRAWF + PT R+ + + S A AG PV + + T Sbjct: 144 GHPDLRAWFAAELAAVTAPGTTAPTARDVVVLPGTQSGLCSVFRALAGAGQPVLVESPTY 203
Query: 271 RIAISTAIQAAQDNLQILGKDHTQGHDPRDLVAGMWEGG 387 A+ A QA D + + G QG DP DL E G Sbjct: 204 WGALLAAAQAGVDVVPVRG--GPQGPDPADLARAFTESG 240
>tr|A7F0B3|A7F0B3_SCLS1 Putative uncharacterized protein OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 / Ss-1) GN=SS1G_11030 PE=4 SV=1 Length = 701
Score = 38.9 bits (89), Expect = 0.15 Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 4/155 (2%) Frame = +1
Query: 10 KIKQKKTSVRQFVEEIKDLARQLSSPLGHKSLRAWFLNGNSLKGVANQRLPTQRESGRVI 189 K+ VR+ ++++K Q + G K G +G + +++ G+V Sbjct: 440 KLANDIAHVRKTIDKLKQQISQAET--GMKDF------GKRKRGSTTKAQLSEQRPGKVQ 491
Query: 190 TRPVSVSSAITASAGGRVPVRLLTLTVRIAISTAIQAAQDNLQILGKDHTQGHDPRDLV- 366 + S + +SAGGRVP+ L ++ + + A D + ++ DP D+ Sbjct: 492 KHKRTWSMSSASSAGGRVPMEE-DLHSKLRAMSEMSQAHDQVASFSCVDSEQDDP-DIHP 549
Query: 367 ---AGMWEGGPVCKGVDGSTGPPALQQPQCKPIAC 462 AG G GVD S PP ++QP KP AC Sbjct: 550 SGDAGSLSGWIEALGVDPSYNPPVIEQP-VKPAAC 583
>tr|Q97DT5|Q97DT5_CLOAB Pectate lyase OS=Clostridium acetobutylicum GN=CA_C3387 PE=4 SV=1 Length = 412
Score = 36.6 bits (83), Expect = 0.75 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = +3
Query: 186 NHSTGECVKCDYCERRGKSAS*VINTDG*DSHIDSNTGS 302 NH TG C+KCD G + + + NTDG +H D T S Sbjct: 180 NHGTGSCIKCDSYNNIGPTKNSIGNTDGFGAHGDGVTFS 218
>tr|A9WHX1|A9WHX1_CHLAA Putative uncharacterized protein OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=Caur_1007 PE=4 SV=1 Length = 577
Score = 35.8 bits (81), Expect = 1.3 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Frame = +3
Query: 15 QTKEDQCQAICG----RDQGLGQTTIFTIGAQKSQGMVPQWKLIKRGGESEITNPKGKWE 182 Q + QC A+ G + + Q T+ T+ G + +++ GG+ E+ N G Sbjct: 207 QARRVQCLAVSGDVDASEAQIDQFTVETVAGDVEAGTITNGRMVTIGGDLELNNVTGDLT 266
Query: 183 SNHSTGECV 209 +H G+CV Sbjct: 267 VSHVGGDCV 275
>tr|B2QRB1|B2QRB1_9CHLR Putative uncharacterized protein OS=Chloroflexus sp. Y-400-fl GN=Chy400DRAFT_3544 PE=4 SV=1 Length = 577
Score = 35.8 bits (81), Expect = 1.3 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 4/69 (5%) Frame = +3
Query: 15 QTKEDQCQAICG----RDQGLGQTTIFTIGAQKSQGMVPQWKLIKRGGESEITNPKGKWE 182 Q + QC A+ G + + Q T+ T+ G + +++ GG+ E+ N G Sbjct: 207 QARRVQCLAVSGDVDASEAQIDQFTVETVAGDVEAGTITNGRMVTIGGDLELNNVTGDLT 266
Query: 183 SNHSTGECV 209 +H G+CV Sbjct: 267 VSHVGGDCV 275
>tr|A0ACQ7|A0ACQ7_STRAM Putative peptide synthetase OS=Streptomyces ambofaciens ATCC 23877 GN=SAMR0552 PE=3 SV=1 Length = 3667
Score = 35.8 bits (81), Expect = 1.3 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 1/95 (1%) Frame = +1
Query: 73 QLSSPLGHKSLRAWFLNGNSLKGVANQRLPTQRESGRVITRPVSVSSAITASAGGRVPVR 252 QL+ P GH ++WF L A T V+ R V + T A G PV+ Sbjct: 2664 QLTGPAGHYVAQSWFTFDRRLDTGALAEAMT-----HVLARHPGVGAGFTTDADGN-PVQ 2717
Query: 253 LLTLTVRIAISTAIQAAQDNLQIL-GKDHTQGHDP 354 +L R+ + T A + + L +D G DP Sbjct: 2718 VLAAGRRVDVRTVAAATDEEAEALRARDRATGFDP 2752
>tr|A8KXM6|A8KXM6_FRASN Diguanylate cyclase/phosphodiesterase with GAF sensor OS=Frankia sp. (strain EAN1pec) GN=Franean1_2044 PE=4 SV=1 Length = 1186
Score = 35.4 bits (80), Expect = 1.7 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 3/89 (3%) Frame = -2
Query: 347 WPWV*SLPSICRLSWAACIAVDMAI---LTVSVNNLTGTLPPALAVIALDTLTGRVITLP 177 +PW+ S + RL W+ +A + + L SVN+ P L A+ + G ++ Sbjct: 101 FPWIASYCGVLRLGWSLAMAAWVTLTLLLAASVNSALAGSPALLIAAAVSSAGGCLVMYV 160
Query: 176 LSLWVGNL*FATPFNEFPLRNHALRLLCP 90 L W G ++ P R+ R P Sbjct: 161 LFQWRGEQAYSDPLTSLVARSGLTRAADP 189
>tr|A7D110|A7D110_9EURY Preprotein translocase secY subunit OS=Halorubrum lacusprofundi ATCC 49239 GN=HlacDRAFT_0854 PE=3 SV=1 Length = 492
Score = 35.4 bits (80), Expect = 1.7 Identities = 25/76 (32%), Positives = 37/76 (48%) Frame = +1
Query: 199 VSVSSAITASAGGRVPVRLLTLTVRIAISTAIQAAQDNLQILGKDHTQGHDPRDLVAGMW 378 + +S A A GR PV+L+ +V I ++A Q N+Q LG+ L++ W Sbjct: 269 IPLSHARVKGARGRFPVKLIYASVLPMI--LVRALQANIQFLGQ----------LLSSQW 316
Query: 379 EGGPVCKGVDGSTGPP 426 G P GV G+ G P Sbjct: 317 AGMPGWLGVYGNQGQP 332
>tr|B6X8G8|B6X8G8_9ENTR Putative uncharacterized protein OS=Providencia rustigianii DSM 4541 GN=PROVRUST_03593 PE=4 SV=1 Length = 106
Score = 34.7 bits (78), Expect = 2.9 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Frame = +3
Query: 27 DQCQAICGRDQGLGQTTIFTIGAQKSQGMV-----PQWKLIKRGGESEITNPKGKWE--S 185 + C + G G Q + G S G++ W+ I+ G SE+T G+W + Sbjct: 29 EMCPHVLGSKNGREQALFYQFGGYSSSGVIIPGSSSNWRCIQIDGLSEVTLRDGEWHTAA 88
Query: 186 NHS-TGECV 209 NHS T CV Sbjct: 89 NHSQTQTCV 97
>tr|B6APE8|B6APE8_9BACT Rare lipoprotein A family protein OS=Leptospirillum sp. Group II '5-way CG' GN=CGL2_11067017 PE=4 SV=1 Length = 263
Score = 34.3 bits (77), Expect = 3.8 Identities = 26/79 (32%), Positives = 35/79 (44%) Frame = +1
Query: 85 PLGHKSLRAWFLNGNSLKGVANQRLPTQRESGRVITRPVSVSSAITASAGGRVPVRLLTL 264 PLG + NG S+ V N R P R GRVI ++AI G PVRL L Sbjct: 118 PLGTRVRVENLENGRSVDVVINDRGPFVR--GRVIDLSWKAANAIGMLGRGTAPVRLTVL 175
Query: 265 TVRIAISTAIQAAQDNLQI 321 R + + A+ N ++ Sbjct: 176 NGRSGVPAEEKLAEGNFEV 194
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