BP917928
Clone id YMU001_000107_D11
Library
Length 515
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000107_D11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
TGGGGACAAAGGTGTAATACACACTCAACATAAGAGAGAAGACAAAAACACCCAAAAAAC
GAAAAATTGTACATTTGTACAAGGAACATGCACAATGGTGGCAAGGAAAATCTAATTGAT
AGCAGATGGGAACTTACAAATGGGACTGTACAACTCAAATGAAGATCTTGCTTATGGGCT
TCTGATAAATGGAGGAGCTTATAAATACAAGCATCTCCACGCCTGCTATGCTTTATCAGT
AAACCAGATGGGAGATCACACAAATAGTGACGATCTACTAAGCCAGAAGATGAACACACT
AAAATGCTAGTCATCACTCTGCTTCATGCTCAAACAATGCCAGCTATTTTACGAGGTGGG
GAGGTGGAGTAGCTGGTATTCATGGACAGACCCTGCAGCTAAAGCACCGTATTTGGTATG
CTCTTCCTCTCACTCCCATAGAGCACATATAATGGCGGGACAAATGCTGCTCCCTAACTG
ATTTTCCTCCTCTGGAGCCATGCCTCCCATTGGAT
■■Homology search results ■■ -
sp_hit_id A6W6U1
Definition sp|A6W6U1|SYM_KINRD Methionyl-tRNA synthetase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216)
Align length 51
Score (bit) 31.2
E-value 3.0
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917928|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_D11.
(515 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|A6W6U1|SYM_KINRD Methionyl-tRNA synthetase OS=Kineococcus rad... 31 3.0
sp|P23662|CYB_CHLRE Cytochrome b OS=Chlamydomonas reinhardtii GN... 30 8.7
sp|Q9UNH5|CC14A_HUMAN Dual specificity protein phosphatase CDC14... 30 8.7
sp|Q5RJF7|CA2D4_MOUSE Voltage-dependent calcium channel subunit ... 30 8.7

>sp|A6W6U1|SYM_KINRD Methionyl-tRNA synthetase OS=Kineococcus
radiotolerans (strain ATCC BAA-149 / DSM 14245 /
SRS30216) GN=metG PE=3 SV=1
Length = 600

Score = 31.2 bits (69), Expect = 3.0
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2

Query: 365 WSSWYSWTDPAAKAPYLVCSSSHSHRAHIMAGQMLLPN*FSSSGAMP-PIG 514
W +W WTDPAA++ Y + + + + I ++L + S+G P P G
Sbjct: 282 WKAW--WTDPAAESYYFMGKDNITFHSQIWPAELLAYDGRGSAGGQPGPFG 330


>sp|P23662|CYB_CHLRE Cytochrome b OS=Chlamydomonas reinhardtii
GN=MT-CYB PE=3 SV=1
Length = 381

Score = 29.6 bits (65), Expect = 8.7
Identities = 24/81 (29%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Frame = -1

Query: 422 SIPNTVL*LQGLSMNTSYSTSPPRKIAGIV*A*SRVMTSILVCSSS-GLVD------RHY 264
S+ NT L MN +YS + +AG++ A S+++T IL+ G VD +H
Sbjct: 11 SVLNTHLVAYPTPMNLNYSWNGG-SLAGMMLA-SQMLTGILLAMHYVGHVDYAFASVQHL 68

Query: 263 LCDLPSGLLIKHSRRGDACIY 201
+ D+PSG++++++ A ++
Sbjct: 69 MTDVPSGMILRYAHANGASLF 89


>sp|Q9UNH5|CC14A_HUMAN Dual specificity protein phosphatase CDC14A
OS=Homo sapiens GN=CDC14A PE=1 SV=1
Length = 594

Score = 29.6 bits (65), Expect = 8.7
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Frame = +1

Query: 79 TRNMHNGGKENLIDSRWELTNGTVQLK*RSCLWASDKWRSL*IQASPRL--LCFISKPDG 252
T+NM G++NL D E+ NG Q DK R+L Q PR C D
Sbjct: 371 TQNMERFGEDNLEDDDVEMKNGITQ---------GDKLRALKSQRQPRTSPSCAFRSDDT 421

Query: 253 RSH 261
+ H
Sbjct: 422 KGH 424


>sp|Q5RJF7|CA2D4_MOUSE Voltage-dependent calcium channel subunit
alpha-2/delta-4 OS=Mus musculus GN=Cacna2d4 PE=2 SV=1
Length = 1116

Score = 29.6 bits (65), Expect = 8.7
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2

Query: 323 FMLKQCQLFYEVGRWSSWYSWTDPAAKAPYLVCSSSHSHR 442
++L +C LF + WS+W SW D ++A V SH H+
Sbjct: 946 WLLHECLLF--LLEWSAWGSWQDKGSEAK-SVFHHSHKHK 982


tr_hit_id B7TYP0
Definition tr|B7TYP0|B7TYP0_LEIDO NADH dehydrogenase subunit 5 OS=Leishmania donovani
Align length 51
Score (bit) 33.9
E-value 4.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917928|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_D11.
(515 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B7TYP0|B7TYP0_LEIDO NADH dehydrogenase subunit 5 OS=Leishmani... 34 4.9

>tr|B7TYP0|B7TYP0_LEIDO NADH dehydrogenase subunit 5 OS=Leishmania
donovani GN=ND5 PE=4 SV=1
Length = 590

Score = 33.9 bits (76), Expect = 4.9
Identities = 22/51 (43%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -1

Query: 152 CTVPFVSSHLLSIRFSLPPLCMFLVQMYNFSFFGCFCL--LSYVECVLHLC 6
C V FV H+LS S+ LC+FLV F+ F CFCL Y C C
Sbjct: 16 CGVFFVGRHMLSFWLSII-LCVFLVL---FTLFSCFCLSVCIYGYCFYDFC 62