BP917929
Clone id YMU001_000107_E02
Library
Length 217
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000107_E02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
AACTGGAAGAATTCGCGGCCGCGAAATTCTTGGTTACTTGACTACAAGCAAGTGCTAAAT
TTTGAGTCCAAAAGAAAGCTGGCCATGGCAATGCTACCAGAGCCACAGGATGATCATGAG
GAAAGGCAGGAGATTGCAGTGACAAGATCAAGTTTACTTTCAGAGTCTTTTGAGATGCTA
GCGTATGCTGACCCGGATGCCTTGCAAGGGGGAATCT
■■Homology search results ■■ -
sp_hit_id Q9SU29
Definition sp|Q9SU29|UPL5_ARATH E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana
Align length 62
Score (bit) 70.9
E-value 2.0e-12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917929|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_E02.
(188 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9SU29|UPL5_ARATH E3 ubiquitin-protein ligase UPL5 OS=Arabido... 71 2e-12
sp|A7HNT0|MURD_FERNB UDP-N-acetylmuramoylalanine--D-glutamate li... 30 3.8
sp|Q09458|YQ37_CAEEL Uncharacterized protein C09F5.7 OS=Caenorha... 30 5.0

>sp|Q9SU29|UPL5_ARATH E3 ubiquitin-protein ligase UPL5
OS=Arabidopsis thaliana GN=UPL5 PE=2 SV=1
Length = 873

Score = 70.9 bits (172), Expect = 2e-12
Identities = 30/62 (48%), Positives = 45/62 (72%)
Frame = +2

Query: 2 WLLDYKQVLNFESKRKLAMAMLPEPQDDHEERQEIAVTRSSLLSESFEMLAYADPDALQG 181
W+ +YK+ NFE++R LAM + P+ ++D EE E+ + RS+LLSESFE + A P+AL G
Sbjct: 479 WIFEYKEATNFEARRHLAMLLFPDVKEDFEEMHEMLIDRSNLLSESFEYIVGASPEALHG 538

Query: 182 GI 187
G+
Sbjct: 539 GL 540


>sp|A7HNT0|MURD_FERNB UDP-N-acetylmuramoylalanine--D-glutamate
ligase OS=Fervidobacterium nodosum (strain ATCC 35602 /
DSM 5306 / Rt17-B1) GN=murD PE=3 SV=1
Length = 420

Score = 30.0 bits (66), Expect = 3.8
Identities = 14/35 (40%), Positives = 24/35 (68%)
Frame = -1

Query: 167 PGQHTLASQKTLKVNLILSLQSPAFPHDHPVALVA 63
P + + S+K L+ ++IL+ SP+ PH+HP+ L A
Sbjct: 48 PYEEGVNSEKILEADVILT--SPSVPHNHPILLKA 80


>sp|Q09458|YQ37_CAEEL Uncharacterized protein C09F5.7
OS=Caenorhabditis elegans GN=C09G5.7 PE=2 SV=1
Length = 395

Score = 29.6 bits (65), Expect = 5.0
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -3

Query: 186 IPPCKASGSAYASISKDSESKLDLVTAI 103
+PP + GS ++SKD E K +VT+I
Sbjct: 318 VPPSREPGSKMMTVSKDEEEKTAIVTSI 345


tr_hit_id A9TCS3
Definition tr|A9TCS3|A9TCS3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 62
Score (bit) 98.6
E-value 1.0e-19
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917929|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_E02.
(188 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TCS3|A9TCS3_PHYPA Predicted protein OS=Physcomitrella paten... 99 1e-19
tr|A9T0Z6|A9T0Z6_PHYPA Predicted protein OS=Physcomitrella paten... 98 2e-19
tr|A7QZX3|A7QZX3_VITVI Chromosome undetermined scaffold_292, who... 71 3e-11
tr|Q0J0T6|Q0J0T6_ORYSJ Os09g0484300 protein OS=Oryza sativa subs... 59 1e-07
tr|B8BCV1|B8BCV1_ORYSI Putative uncharacterized protein OS=Oryza... 59 1e-07
tr|A3C031|A3C031_ORYSJ Putative uncharacterized protein OS=Oryza... 59 1e-07
tr|B7ZZW0|B7ZZW0_MAIZE Putative uncharacterized protein OS=Zea m... 56 8e-07
tr|Q2L3D3|Q2L3D3_BRASY Polyubiquitin-like protein OS=Brachypodiu... 55 2e-06
tr|Q2HT46|Q2HT46_MEDTR HECT; Ubiquitin OS=Medicago truncatula GN... 53 9e-06
tr|Q2HT48|Q2HT48_MEDTR HECT; Ubiquitin OS=Medicago truncatula GN... 46 0.001
tr|A5PHC8|A5PHC8_GRAGR Amelogenin (Fragment) OS=Grampus griseus ... 33 9.4
tr|A5PHC6|A5PHC6_BALPH Amelogenin (Fragment) OS=Balaenoptera phy... 33 9.4
tr|A5PHB8|A5PHB8_STECO Amelogenin (Fragment) OS=Stenella coerule... 33 9.4

>tr|A9TCS3|A9TCS3_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_143599 PE=4 SV=1
Length = 842

Score = 98.6 bits (244), Expect = 1e-19
Identities = 44/62 (70%), Positives = 54/62 (87%)
Frame = +2

Query: 2 WLLDYKQVLNFESKRKLAMAMLPEPQDDHEERQEIAVTRSSLLSESFEMLAYADPDALQG 181
WLLD+K +L FESKR+L MAMLPEPQDDH+ERQE+ V R++LL+ESFE LAY +P+ LQG
Sbjct: 450 WLLDHKTLLEFESKRRLVMAMLPEPQDDHDERQEVVVKRATLLTESFEQLAYVEPEVLQG 509

Query: 182 GI 187
GI
Sbjct: 510 GI 511


>tr|A9T0Z6|A9T0Z6_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_138593 PE=4 SV=1
Length = 824

Score = 97.8 bits (242), Expect = 2e-19
Identities = 43/62 (69%), Positives = 55/62 (88%)
Frame = +2

Query: 2 WLLDYKQVLNFESKRKLAMAMLPEPQDDHEERQEIAVTRSSLLSESFEMLAYADPDALQG 181
WLL++K +L+FESKR+L MAMLPEPQDDH+ERQE+ V R++LL+ESFE LAY +P+ LQG
Sbjct: 431 WLLEHKSLLDFESKRRLVMAMLPEPQDDHDERQEVVVKRATLLTESFEQLAYVEPEVLQG 490

Query: 182 GI 187
GI
Sbjct: 491 GI 492


>tr|A7QZX3|A7QZX3_VITVI Chromosome undetermined scaffold_292, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00010879001 PE=4 SV=1
Length = 833

Score = 70.9 bits (172), Expect = 3e-11
Identities = 32/62 (51%), Positives = 47/62 (75%)
Frame = +2

Query: 2 WLLDYKQVLNFESKRKLAMAMLPEPQDDHEERQEIAVTRSSLLSESFEMLAYADPDALQG 181
WLL++K V +FES+R LAM M PE ++D+EE E+ + RS LL+ESFE +A A+ ++L G
Sbjct: 440 WLLEHKDVTDFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLAESFEYIARAERESLHG 499

Query: 182 GI 187
G+
Sbjct: 500 GL 501


>tr|Q0J0T6|Q0J0T6_ORYSJ Os09g0484300 protein OS=Oryza sativa subsp.
japonica GN=Os09g0484300 PE=4 SV=1
Length = 865

Score = 58.9 bits (141), Expect = 1e-07
Identities = 27/62 (43%), Positives = 40/62 (64%)
Frame = +2

Query: 2 WLLDYKQVLNFESKRKLAMAMLPEPQDDHEERQEIAVTRSSLLSESFEMLAYADPDALQG 181
WL+ +K +L FES+R L + MLPE +D++ E E+ + R LL ESFE + A P L+
Sbjct: 490 WLVKHKDLLCFESRRNLVLMMLPEGKDEYGELHEMLIDRQHLLDESFEYIIQARPSELRS 549

Query: 182 GI 187
G+
Sbjct: 550 GL 551


>tr|B8BCV1|B8BCV1_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_31825 PE=4 SV=1
Length = 867

Score = 58.9 bits (141), Expect = 1e-07
Identities = 27/62 (43%), Positives = 40/62 (64%)
Frame = +2

Query: 2 WLLDYKQVLNFESKRKLAMAMLPEPQDDHEERQEIAVTRSSLLSESFEMLAYADPDALQG 181
WL+ +K +L FES+R L + MLPE +D++ E E+ + R LL ESFE + A P L+
Sbjct: 491 WLVKHKDLLCFESRRNLVLMMLPEGKDEYGELHEMLIDRQHLLDESFEYIIQARPSELRS 550

Query: 182 GI 187
G+
Sbjct: 551 GL 552


>tr|A3C031|A3C031_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_028653 PE=4 SV=1
Length = 910

Score = 58.9 bits (141), Expect = 1e-07
Identities = 27/62 (43%), Positives = 40/62 (64%)
Frame = +2

Query: 2 WLLDYKQVLNFESKRKLAMAMLPEPQDDHEERQEIAVTRSSLLSESFEMLAYADPDALQG 181
WL+ +K +L FES+R L + MLPE +D++ E E+ + R LL ESFE + A P L+
Sbjct: 452 WLVKHKDLLCFESRRNLVLMMLPEGKDEYGELHEMLIDRQHLLDESFEYIIQARPSELRS 511

Query: 182 GI 187
G+
Sbjct: 512 GL 513


>tr|B7ZZW0|B7ZZW0_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 871

Score = 56.2 bits (134), Expect = 8e-07
Identities = 27/62 (43%), Positives = 38/62 (61%)
Frame = +2

Query: 2 WLLDYKQVLNFESKRKLAMAMLPEPQDDHEERQEIAVTRSSLLSESFEMLAYADPDALQG 181
WL+ +K +L FE++R L MLPE +DD E E+ + RS LL ESF +A A+ L G
Sbjct: 480 WLVKHKNLLCFEARRSLVFMMLPEGKDDFGELHEMLIDRSHLLDESFNYIAQAEQAELHG 539

Query: 182 GI 187
+
Sbjct: 540 AL 541


>tr|Q2L3D3|Q2L3D3_BRASY Polyubiquitin-like protein OS=Brachypodium
sylvaticum GN=plp-1 PE=4 SV=1
Length = 849

Score = 55.1 bits (131), Expect = 2e-06
Identities = 25/62 (40%), Positives = 38/62 (61%)
Frame = +2

Query: 2 WLLDYKQVLNFESKRKLAMAMLPEPQDDHEERQEIAVTRSSLLSESFEMLAYADPDALQG 181
WL+ +K +L FE++R L + + E +DD+ E E+ + RS LL ESFE + A P L
Sbjct: 461 WLVKHKDLLCFEARRNLVLMLFSEGKDDYGELHEMLIDRSHLLDESFEYITQARPSELHS 520

Query: 182 GI 187
G+
Sbjct: 521 GL 522


>tr|Q2HT46|Q2HT46_MEDTR HECT; Ubiquitin OS=Medicago truncatula
GN=MtrDRAFT_AC150798g3v2 PE=4 SV=1
Length = 826

Score = 52.8 bits (125), Expect = 9e-06
Identities = 27/62 (43%), Positives = 42/62 (67%)
Frame = +2

Query: 2 WLLDYKQVLNFESKRKLAMAMLPEPQDDHEERQEIAVTRSSLLSESFEMLAYADPDALQG 181
WLL+ K V +FES+R LA+ + P+ +D+ E+ + RS +L+ESFE ++ A +LQG
Sbjct: 435 WLLENKIVTDFESRRHLALMLFPDSKDE-ISGYEMLIDRSQVLAESFEYMSRAKAKSLQG 493

Query: 182 GI 187
GI
Sbjct: 494 GI 495


>tr|Q2HT48|Q2HT48_MEDTR HECT; Ubiquitin OS=Medicago truncatula
GN=MtrDRAFT_AC150798g1v2 PE=4 SV=1
Length = 815

Score = 45.8 bits (107), Expect = 0.001
Identities = 24/62 (38%), Positives = 40/62 (64%)
Frame = +2

Query: 2 WLLDYKQVLNFESKRKLAMAMLPEPQDDHEERQEIAVTRSSLLSESFEMLAYADPDALQG 181
WLL+ + V +FES++ L M + P+ +D E+ + RS +L+ESFE ++ A P +LQG
Sbjct: 424 WLLENRIVTDFESRKHLVMMLFPDLKDKILG-YEMLIDRSQVLAESFEYISRAMPKSLQG 482

Query: 182 GI 187
+
Sbjct: 483 DL 484