NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917931
Clone id YMU001_000107_E04
Library
Length 467
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000107_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GGCACTGGCCGAGTACAAATACAGCCTTTGTTTGAGAGTAGAAAAATCTTTTGTCACCCA
CGTGCAGACACTCTTGCCAGGTACAAATACAGGCTTTGCTTGAGAATACAAAAATCTTTT
ATCGCCCGTCTGCAGGCATTCTCGCCATGTACAAATACAGGCTTTGCTTGAGAGTATACA
TGTGCAGACACTCTTCAAGGCAAAAATCCACAGGCATCCCTCCAGCAACAAACACTCTTC
ATTTTCATGTTTACATTCCTTTGATATCATGCCCTTCTCATGCTACCTTATTAACCTTAG
CTACAGCTAAATAGGAGAAAGAGGTTGGCACAAGCCTGCTCTTCCATGTAGGTCACCTTG
ATATTTAAATCATCCTTCTCAAAGGGCACCTATGCTCCTTGCTCTGTGCAACATGTATTA
TTTTGGTCACAAAAAAGACCATCTACATCTCCATTCTGTAATTACTG
■■Homology search results ■■ -
sp_hit_id P35832
Definition sp|P35832|PTP99_DROME Tyrosine-protein phosphatase 99A OS=Drosophila melanogaster
Align length 76
Score (bit) 30.0
E-value 5.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917931|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_E04.
         (467 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P35832|PTP99_DROME Tyrosine-protein phosphatase 99A OS=Drosop...    30   5.2  

>sp|P35832|PTP99_DROME Tyrosine-protein phosphatase 99A
           OS=Drosophila melanogaster GN=Ptp99A PE=2 SV=2
          Length = 1301

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
 Frame = +2

Query: 50  FVTHVQTLLPGTNTGFA*EYKNLLSPV------CRHSRHVQIQALLESIHVQTLFKAKIH 211
           F  HV +L    + GF+ EY+ + +        C HS+H + +     +++     +++H
Sbjct: 461 FAKHVASLHADGDIGFSREYEAIQNECISDDLPCEHSQHPENKRKNRYLNITAYDHSRVH 520

Query: 212 RHPSSNKHSSFSCLHS 259
            HP+  +  +   +++
Sbjct: 521 LHPTPGQKKNLDYINA 536
tr_hit_id A8BM49
Definition tr|A8BM49|A8BM49_GIALA High cysteine membrane protein VSP-like OS=Giardia lamblia ATCC 50803
Align length 54
Score (bit) 32.7
E-value 9.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917931|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_E04.
         (467 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8BM49|A8BM49_GIALA High cysteine membrane protein VSP-like O...    33   9.4  

>tr|A8BM49|A8BM49_GIALA High cysteine membrane protein VSP-like
           OS=Giardia lamblia ATCC 50803 GN=GL50803_115066 PE=4
           SV=1
          Length = 1167

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 9/54 (16%)
 Frame = -3

Query: 189 VCTCILSSKACICTW-------RECLQTGDKRFLYSQA--KPVFVPGKSVCTWV 55
           +CT + S+    C         R CLQ G   FLY     +    PGKSVCTWV
Sbjct: 634 ICTDVTSAHPSGCVTGVGSDSARSCLQCGAGYFLYMGGCYQENKEPGKSVCTWV 687