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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917941
Clone id YMU001_000107_F04
Library
Length 508
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000107_F04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGTGGCTTCTTTGAGGCTGTAGATGAGTGTCCCAAAGAAAAGTCATCAGGAGGCCTCAAG
AGATAAAGACATGAAGAAAAGTCAGGGTGAAGATACTATTGGTTGACAACTGAAGTGTGG
CAGATGCTTAAAGAGAAGATTTATAAAGTGGAGCACAAAGTTTTAGTTCAACTGGGTTGT
TGTCTCTGTTGAAGTGAAGATTGTGAAGTCCTTTACATTTAATTGAAGAGGCGCAAAATT
TGACTTCACTGCAAGGTCAGCAACCCACGGCCTGGTTTTCCTTGTGTGTATAAAGCATGC
ACAAGTCATATCATTGGAAGTAGTTGTCCGGTATGTACATATGCGAGCTCTTTCTTGTGT
GGTCACATTGTGGATTTTGCACTGGTATTATCTTGTTGATCATGACAGGTTCTCAGCGTG
ATTGTGAAACTTCGTATTTGTTTCACTCCCGTCCTCTTGAGAAATTTGAGGTAGCTTGTT
TTGCTTATTAAGATCGGTCTTATAATTT
■■Homology search results ■■ -
sp_hit_id P34694
Definition sp|P34694|TF3A_BUFAM Transcription factor IIIA OS=Bufo americanus
Align length 40
Score (bit) 30.4
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917941|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_F04.
         (508 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34694|TF3A_BUFAM Transcription factor IIIA OS=Bufo americanu...    30   5.0  

>sp|P34694|TF3A_BUFAM Transcription factor IIIA OS=Bufo americanus
           GN=gtf3a PE=2 SV=1
          Length = 339

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 17/40 (42%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 184 LC*SEDCEVLYI*LKRRKI*LH-CKVSNPRPGFPCVYKAC 300
           +C   DC   Y   K RK+  H CK +  RP FPC Y+ C
Sbjct: 13  ICSFPDCNATYN--KNRKLQAHLCKHTGERP-FPCTYEGC 49
tr_hit_id Q7NBN1
Definition tr|Q7NBN1|Q7NBN1_MYCGA Putative uncharacterized protein OS=Mycoplasma gallisepticum
Align length 113
Score (bit) 35.8
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917941|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_F04.
         (508 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q7NBN1|Q7NBN1_MYCGA Putative uncharacterized protein OS=Mycop...    36   1.2  

>tr|Q7NBN1|Q7NBN1_MYCGA Putative uncharacterized protein
           OS=Mycoplasma gallisepticum GN=MYCGA2370 PE=4 SV=1
          Length = 577

 Score = 35.8 bits (81), Expect = 1.2
 Identities = 32/113 (28%), Positives = 51/113 (45%), Gaps = 2/113 (1%)
 Frame = -1

Query: 478 QATSNFSRGRE*NKYEVSQSR*EPVMINKIIPVQNPQCDHTRKSSHMYIPDNYFQ*YDLC 299
           Q +S F   +E +K++  Q+  +   + K I  Q    D+  K SH+Y+ D Y + +   
Sbjct: 105 QNSSRFDFIQEEHKFKTKQALEK---LEKNIHSQLITDDYRDKRSHIYLLDWYAKLFKTP 161

Query: 298 MLYTHKENQAVGC*PCSEVKFCASSIKCKGLHNLHFNRDNNP--VELKLCAPL 146
                K  + V C       F  S I  +  + LHF++DN P  +E   CA L
Sbjct: 162 AAQLLKNKEFVKC-------FIESCIDYESCYELHFDQDNKPKNLEYATCADL 207