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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917948
Clone id YMU001_000107_G02
Library
Length 468
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000107_G02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ACGGCAGTGGCATCACAGTCAGCTATGTCTCTGGCGGCAACAAATGCAACACAAAAAATC
GAAGATCTAGTAAGGTTACTGAGGCAGGTAGATCTGGTACAGCATCGAGAGTCGATCTCG
CAAGAAGGTAGGGGATCAATGCCCTCTGGGGAGGCATTAGCTGGACATTATTGTGCCCAA
GCAACACCCGCCACAAGGCGTAGGCATAGCGATGAAATGACGATGAAAGGGGGTTGCTTC
TTTGATGACGACGAAGATGGGGGTGAGCCTCGATTGGAGCGCGTAGAATCAGGAAAGGGT
CTCAGAGCCCAAATCTTTGAGAGCTTGTTAAGTTCTGCCAATGTATCAGGATACTGAAGA
GCAATATCAGAACGGGATTCCAACAATTACTTTATAAACTGCTGATTCCAACAAAATGAT
CGCCTTGACAAAGCTCTGTACATAACTCCGGACAAGGGAGTACATGTA
■■Homology search results ■■ -
sp_hit_id Q6L4N4
Definition sp|Q6L4N4|C3H35_ORYSJ Zinc finger CCCH domain-containing protein 35 OS=Oryza sativa subsp. japonica
Align length 25
Score (bit) 31.2
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917948|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_G02.
         (468 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6L4N4|C3H35_ORYSJ Zinc finger CCCH domain-containing protein...    31   2.4  
sp|Q5R8C7|ILDR1_PONAB Immunoglobulin-like domain-containing rece...    31   3.1  
sp|Q8CBR1|ILDR1_MOUSE Immunoglobulin-like domain-containing rece...    31   3.1  
sp|Q86SU0|ILDR1_HUMAN Immunoglobulin-like domain-containing rece...    31   3.1  
sp|Q39DG2|T23O_BURS3 Tryptophan 2,3-dioxygenase OS=Burkholderia ...    29   8.9  
sp|A9AGH1|T23O_BURM1 Tryptophan 2,3-dioxygenase OS=Burkholderia ...    29   8.9  
sp|Q0BCE0|T23O_BURCM Tryptophan 2,3-dioxygenase OS=Burkholderia ...    29   8.9  
sp|B1YVH2|T23O_BURA4 Tryptophan 2,3-dioxygenase OS=Burkholderia ...    29   8.9  

>sp|Q6L4N4|C3H35_ORYSJ Zinc finger CCCH domain-containing protein 35
           OS=Oryza sativa subsp. japonica GN=Os05g0195200 PE=2
           SV=1
          Length = 402

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +1

Query: 274 LERVESGKGLRAQIFESLLSSANVS 348
           +ERVESG+ LR ++FE L   A VS
Sbjct: 356 MERVESGRALREKVFERLSKEATVS 380


>sp|Q5R8C7|ILDR1_PONAB Immunoglobulin-like domain-containing
           receptor 1 OS=Pongo abelii GN=ILDR1 PE=2 SV=1
          Length = 546

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -2

Query: 227 FIVISSLCLRLVAGVAWAQ*CPANASPEGIDPLPSCEIDSRCCTRSTC 84
           FI++ +L L L+ GV W Q CP             C I   CC    C
Sbjct: 173 FIILGALLLLLLIGVCWCQCCPQYC---------CCYIRCPCCPARCC 211


>sp|Q8CBR1|ILDR1_MOUSE Immunoglobulin-like domain-containing
           receptor 1 OS=Mus musculus GN=Ildr1 PE=2 SV=2
          Length = 537

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -2

Query: 227 FIVISSLCLRLVAGVAWAQ*CPANASPEGIDPLPSCEIDSRCCTRSTC 84
           FI++ +L L L+ GV W Q CP             C I   CC    C
Sbjct: 172 FIILGALLLLLLIGVCWCQCCPQYC---------CCYIRCPCCPTRCC 210


>sp|Q86SU0|ILDR1_HUMAN Immunoglobulin-like domain-containing
           receptor 1 OS=Homo sapiens GN=ILDR1 PE=1 SV=2
          Length = 546

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -2

Query: 227 FIVISSLCLRLVAGVAWAQ*CPANASPEGIDPLPSCEIDSRCCTRSTC 84
           FI++ +L L L+ GV W Q CP             C I   CC    C
Sbjct: 173 FIILGALLLLLLIGVCWCQCCPQYC---------CCYIRCPCCPAHCC 211


>sp|Q39DG2|T23O_BURS3 Tryptophan 2,3-dioxygenase OS=Burkholderia sp.
           (strain 383) GN=kynA PE=3 SV=1
          Length = 310

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 226 SSSFHRYAYALWRVLLGHNNVQLMPPQRALIPYLL--ARSTLDA 101
           SS F  Y Y     LLG+ NVQ++ P  A  P +L   R+TL+A
Sbjct: 151 SSGFQSYQYRQLEFLLGNKNVQMLQP-HAHRPDILEQVRATLEA 193


>sp|A9AGH1|T23O_BURM1 Tryptophan 2,3-dioxygenase OS=Burkholderia
           multivorans (strain ATCC 17616 / 249) GN=kynA PE=3 SV=2
          Length = 310

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = -3

Query: 226 SSSFHRYAYALWRVLLGHNNVQLMPPQRALIPYLL--ARSTLDA 101
           SS F  Y Y     LLG+ N Q++ P  A  P +L   R+TLDA
Sbjct: 151 SSGFQSYQYRQLEFLLGNKNAQMLQP-HAHRPDILEQVRATLDA 193


>sp|Q0BCE0|T23O_BURCM Tryptophan 2,3-dioxygenase OS=Burkholderia
           ambifaria (strain ATCC BAA-244 / AMMD) GN=kynA PE=3 SV=2
          Length = 308

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 226 SSSFHRYAYALWRVLLGHNNVQLMPPQRALIPYLL--ARSTLDA 101
           SS F  Y Y     LLG+ NVQ++ P  A  P +L   R+TL+A
Sbjct: 149 SSGFQSYQYRQLEFLLGNKNVQMLQP-HAHRPDILEQVRATLEA 191


>sp|B1YVH2|T23O_BURA4 Tryptophan 2,3-dioxygenase OS=Burkholderia
           ambifaria (strain MC40-6) GN=kynA PE=3 SV=2
          Length = 308

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 19/44 (43%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -3

Query: 226 SSSFHRYAYALWRVLLGHNNVQLMPPQRALIPYLL--ARSTLDA 101
           SS F  Y Y     LLG+ NVQ++ P  A  P +L   R+TL+A
Sbjct: 149 SSGFQSYQYRQLEFLLGNKNVQMLQP-HAHRPDILEQVRATLEA 191
tr_hit_id Q4RW99
Definition tr|Q4RW99|Q4RW99_TETNG Chromosome 9 SCAF14991, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
Align length 73
Score (bit) 33.1
E-value 7.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917948|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_G02.
         (468 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4RW99|Q4RW99_TETNG Chromosome 9 SCAF14991, whole genome shot...    33   7.2  
tr|O82199|O82199_ARATH Putative CCCH-type zinc finger protein OS...    33   9.3  

>tr|Q4RW99|Q4RW99_TETNG Chromosome 9 SCAF14991, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00027960001 PE=4 SV=1
          Length = 1019

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 24/73 (32%), Positives = 34/73 (46%)
 Frame = -3

Query: 355 SILIHWQNLTSSQRFGL*DPFLILRAPIEAHPHLRRHQRSNPLSSSFHRYAYALWRVLLG 176
           S L +  +L  SQ F    P ++++AP         H R N L  SF R   +L R+ L 
Sbjct: 666 SALTNLHHLDLSQNFITFLPHIVIQAPASFLLLDLSHNRINYLPQSFFRAMNSLRRLYLS 725

Query: 175 HNNVQLMPPQRAL 137
           HN ++    Q AL
Sbjct: 726 HNQLKQFDHQLAL 738


>tr|O82199|O82199_ARATH Putative CCCH-type zinc finger protein
           OS=Arabidopsis thaliana GN=At2g19810 PE=2 SV=1
          Length = 359

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 17/28 (60%), Positives = 20/28 (71%)
 Frame = +1

Query: 268 PRLERVESGKGLRAQIFESLLSSANVSG 351
           P +ERVESG+ LRAQ+FE  LS  N  G
Sbjct: 309 PAMERVESGRELRAQLFEK-LSKENCMG 335