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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917950
Clone id YMU001_000107_G05
Library
Length 213
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000107_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GATCCCCTCACATGTCTTTGAAAGGTGACATCTCTGAAGAGGTATGGTCTGGCAAGCCTG
CTTCATATGATCACTTACGCATTTTTGGTTGCGAAGCTTATGTGCATGTTAGACCTGAGT
CGAGGAGTAAACTAGATGCGAAGTCCATTAAAGGCCTCTTCATGGGATATGGTGAAGAAG
GCGAAATGGGTTACAGGATTTGGTTACCTCAGC
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 53
Score (bit) 60.8
E-value 2.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917950|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_G05.
         (213 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    61   2e-09
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G...    39   0.006
sp|P92512|M710_ARATH Uncharacterized mitochondrial protein AtMg0...    36   0.068

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 27/53 (50%), Positives = 35/53 (66%)
 Frame = +3

Query: 3   SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKGLF 161
           SP + L  +I E VW+ K  SY HL++FGC A+ HV  E R+KLD KSI  +F
Sbjct: 624 SPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIF 676


>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster
           GN=GIP PE=1 SV=3
          Length = 1409

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +3

Query: 39  EVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKGLF 161
           E+W  K     HLR+FG   YVH++   + K D KS K +F
Sbjct: 638 EMWHNKKPYLKHLRVFGATVYVHIK-NKQGKFDDKSFKSIF 677


>sp|P92512|M710_ARATH Uncharacterized mitochondrial protein
           AtMg00710 OS=Arabidopsis thaliana GN=AtMg00710 PE=4 SV=1
          Length = 120

 Score = 35.8 bits (81), Expect = 0.068
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 6   PHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKG 155
           P  ++   + +EVW     +Y +LR FGC AY+H       KL  ++ KG
Sbjct: 38  PSTAINFHVPDEVWFQSVPTYSYLRRFGCVAYIHC---DEGKLKPRAKKG 84
tr_hit_id Q5MG99
Definition tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea batatas
Align length 53
Score (bit) 67.8
E-value 3.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917950|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_G05.
         (213 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea b...    68   3e-10
tr|Q6RZV5|Q6RZV5_MUSAC Retrotransposon-like protein OS=Musa acum...    65   2e-09
tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense PE=4...    63   9e-09
tr|A5AHJ0|A5AHJ0_VITVI Putative uncharacterized protein OS=Vitis...    62   1e-08
tr|A5C3L0|A5C3L0_VITVI Putative uncharacterized protein OS=Vitis...    62   2e-08
tr|A5ATZ8|A5ATZ8_VITVI Putative uncharacterized protein OS=Vitis...    62   2e-08
tr|A5C9D7|A5C9D7_VITVI Putative uncharacterized protein OS=Vitis...    61   2e-08
tr|A5B8G2|A5B8G2_VITVI Putative uncharacterized protein OS=Vitis...    61   2e-08
tr|A5B4R8|A5B4R8_VITVI Putative uncharacterized protein OS=Vitis...    61   2e-08
tr|A5BJP3|A5BJP3_VITVI Putative uncharacterized protein (Fragmen...    61   3e-08
tr|A5BAR0|A5BAR0_VITVI Putative uncharacterized protein OS=Vitis...    61   3e-08
tr|A5CBH7|A5CBH7_VITVI Putative uncharacterized protein OS=Vitis...    60   4e-08
tr|A5C7U6|A5C7U6_VITVI Putative uncharacterized protein OS=Vitis...    60   4e-08
tr|A5C540|A5C540_VITVI Putative uncharacterized protein OS=Vitis...    60   4e-08
tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis...    60   6e-08
tr|A5BK92|A5BK92_VITVI Putative uncharacterized protein OS=Vitis...    60   6e-08
tr|A5AMG2|A5AMG2_VITVI Putative uncharacterized protein OS=Vitis...    60   6e-08
tr|A5ACQ7|A5ACQ7_VITVI Putative uncharacterized protein OS=Vitis...    60   6e-08
tr|A7NW85|A7NW85_VITVI Chromosome chr5 scaffold_2, whole genome ...    60   7e-08
tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5C6L3|A5C6L3_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5C2X4|A5C2X4_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5BPB3|A5BPB3_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5BB01|A5BB01_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5BA89|A5BA89_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5ATI4|A5ATI4_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5AN26|A5AN26_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08

>tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea
           batatas PE=4 SV=1
          Length = 1415

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 28/53 (52%), Positives = 42/53 (79%)
 Frame = +3

Query: 3   SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKGLF 161
           SP ++LK ++ ++VW GK  SYDHLR+FGC+A+VHV  + RSKLD+K+ + +F
Sbjct: 619 SPVIALKNEVPDKVWCGKDVSYDHLRVFGCKAFVHVPRDERSKLDSKTRQCIF 671


>tr|Q6RZV5|Q6RZV5_MUSAC Retrotransposon-like protein OS=Musa
           acuminata GN=G9-pp3 PE=4 SV=1
          Length = 521

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 30/64 (46%), Positives = 39/64 (60%)
 Frame = +3

Query: 18  LKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKGLFXXXXXXXXXXXR 197
           LKGD+ E VW GK  SY+HLR+FGC+A+VH+  + RSKLD K+ K              R
Sbjct: 355 LKGDVQERVWRGKDISYNHLRVFGCKAFVHIPKDERSKLDNKA-KACIFLGYGHEEFGYR 413

Query: 198 IWLP 209
           +W P
Sbjct: 414 LWDP 417


>tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense PE=4
           SV=1
          Length = 1328

 Score = 62.8 bits (151), Expect = 9e-09
 Identities = 27/53 (50%), Positives = 37/53 (69%)
 Frame = +3

Query: 3   SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKGLF 161
           SP + L+ DI E VW+ K  SY HL++FGC+A+ HV  E R+KLD KS+  +F
Sbjct: 625 SPSVPLEFDIPERVWTNKEMSYSHLKVFGCKAFAHVPKEQRTKLDDKSVPCIF 677


>tr|A5AHJ0|A5AHJ0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043469 PE=4 SV=1
          Length = 798

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 28/53 (52%), Positives = 36/53 (67%)
 Frame = +3

Query: 3   SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKGLF 161
           SP   L G +++EVW+G P  Y  LR+FGC AYVH+  E  SKLDAKS + +F
Sbjct: 427 SPKAVLDGKVAKEVWTGSPIDYSSLRVFGCPAYVHIPNEEISKLDAKSRQCIF 479


>tr|A5C3L0|A5C3L0_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007384 PE=4 SV=1
          Length = 1317

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 24/48 (50%), Positives = 36/48 (75%)
 Frame = +3

Query: 3   SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKS 146
           +P + L+ D+S+ +WS    SYDHLR+FGC+A+VH+  + RSKLD K+
Sbjct: 572 TPCVPLEFDVSDRIWSNNEISYDHLRVFGCKAFVHIPKDERSKLDVKT 619


>tr|A5ATZ8|A5ATZ8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_000227 PE=4 SV=1
          Length = 605

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 27/53 (50%), Positives = 34/53 (64%)
 Frame = +3

Query: 3   SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKGLF 161
           SP  +L G + +EVW G P  Y  LR+FGC  YVH+  E RSKLD KS + +F
Sbjct: 133 SPRATLHGKVVDEVWIGSPVDYSSLRLFGCPTYVHIPNEDRSKLDEKSRQCIF 185


>tr|A5C9D7|A5C9D7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_007304 PE=4 SV=1
          Length = 1362

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 24/48 (50%), Positives = 36/48 (75%)
 Frame = +3

Query: 3   SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKS 146
           +P + L+ D+ + +WS    SYDHLR+FGC+A+VH+  + RSKLDAK+
Sbjct: 601 TPCVPLEFDVPDRIWSNNEISYDHLRVFGCKAFVHIPKDERSKLDAKT 648


>tr|A5B8G2|A5B8G2_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_010268 PE=4 SV=1
          Length = 761

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 28/53 (52%), Positives = 37/53 (69%)
 Frame = +3

Query: 3   SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKGLF 161
           SP  +LKGDI E VW GK  S++HLR+F C A+VHV  +  SKLD+K+   +F
Sbjct: 416 SPSYTLKGDIPERVWIGKFVSFEHLRVFXCWAFVHVPRDKXSKLDSKTKSCIF 468


>tr|A5B4R8|A5B4R8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_018405 PE=4 SV=1
          Length = 1302

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 24/48 (50%), Positives = 36/48 (75%)
 Frame = +3

Query: 3   SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKS 146
           +P + L+ D+ + +WS    SYDHLR+FGC+A+VH+  + RSKLDAK+
Sbjct: 488 TPCVPLEFDVPDRIWSNNEISYDHLRVFGCKAFVHIPKDERSKLDAKT 535


>tr|A5BJP3|A5BJP3_VITVI Putative uncharacterized protein (Fragment)
           OS=Vitis vinifera GN=VITISV_001876 PE=4 SV=1
          Length = 1392

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 24/48 (50%), Positives = 36/48 (75%)
 Frame = +3

Query: 3   SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKS 146
           +P + L+ D+ + +WS    SYDHLR+FGC+A+VH+  + RSKLDAK+
Sbjct: 447 TPCVLLEFDVPDRIWSNNEISYDHLRVFGCKAFVHIPKDERSKLDAKT 494