BP917950
Clone id YMU001_000107_G05
Library
Length 213
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000107_G05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GATCCCCTCACATGTCTTTGAAAGGTGACATCTCTGAAGAGGTATGGTCTGGCAAGCCTG
CTTCATATGATCACTTACGCATTTTTGGTTGCGAAGCTTATGTGCATGTTAGACCTGAGT
CGAGGAGTAAACTAGATGCGAAGTCCATTAAAGGCCTCTTCATGGGATATGGTGAAGAAG
GCGAAATGGGTTACAGGATTTGGTTACCTCAGC
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 53
Score (bit) 60.8
E-value 2.0e-09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917950|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_G05.
(213 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra... 61 2e-09
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G... 39 0.006
sp|P92512|M710_ARATH Uncharacterized mitochondrial protein AtMg0... 36 0.068

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
Length = 1328

Score = 60.8 bits (146), Expect = 2e-09
Identities = 27/53 (50%), Positives = 35/53 (66%)
Frame = +3

Query: 3 SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKGLF 161
SP + L +I E VW+ K SY HL++FGC A+ HV E R+KLD KSI +F
Sbjct: 624 SPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIF 676


>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster
GN=GIP PE=1 SV=3
Length = 1409

Score = 39.3 bits (90), Expect = 0.006
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +3

Query: 39 EVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKGLF 161
E+W K HLR+FG YVH++ + K D KS K +F
Sbjct: 638 EMWHNKKPYLKHLRVFGATVYVHIK-NKQGKFDDKSFKSIF 677


>sp|P92512|M710_ARATH Uncharacterized mitochondrial protein
AtMg00710 OS=Arabidopsis thaliana GN=AtMg00710 PE=4 SV=1
Length = 120

Score = 35.8 bits (81), Expect = 0.068
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3

Query: 6 PHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKG 155
P ++ + +EVW +Y +LR FGC AY+H KL ++ KG
Sbjct: 38 PSTAINFHVPDEVWFQSVPTYSYLRRFGCVAYIHC---DEGKLKPRAKKG 84


tr_hit_id Q5MG99
Definition tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea batatas
Align length 53
Score (bit) 67.8
E-value 3.0e-10
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917950|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_G05.
(213 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea b... 68 3e-10
tr|Q6RZV5|Q6RZV5_MUSAC Retrotransposon-like protein OS=Musa acum... 65 2e-09
tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense PE=4... 63 9e-09
tr|A5AHJ0|A5AHJ0_VITVI Putative uncharacterized protein OS=Vitis... 62 1e-08
tr|A5C3L0|A5C3L0_VITVI Putative uncharacterized protein OS=Vitis... 62 2e-08
tr|A5ATZ8|A5ATZ8_VITVI Putative uncharacterized protein OS=Vitis... 62 2e-08
tr|A5C9D7|A5C9D7_VITVI Putative uncharacterized protein OS=Vitis... 61 2e-08
tr|A5B8G2|A5B8G2_VITVI Putative uncharacterized protein OS=Vitis... 61 2e-08
tr|A5B4R8|A5B4R8_VITVI Putative uncharacterized protein OS=Vitis... 61 2e-08
tr|A5BJP3|A5BJP3_VITVI Putative uncharacterized protein (Fragmen... 61 3e-08
tr|A5BAR0|A5BAR0_VITVI Putative uncharacterized protein OS=Vitis... 61 3e-08
tr|A5CBH7|A5CBH7_VITVI Putative uncharacterized protein OS=Vitis... 60 4e-08
tr|A5C7U6|A5C7U6_VITVI Putative uncharacterized protein OS=Vitis... 60 4e-08
tr|A5C540|A5C540_VITVI Putative uncharacterized protein OS=Vitis... 60 4e-08
tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis... 60 6e-08
tr|A5BK92|A5BK92_VITVI Putative uncharacterized protein OS=Vitis... 60 6e-08
tr|A5AMG2|A5AMG2_VITVI Putative uncharacterized protein OS=Vitis... 60 6e-08
tr|A5ACQ7|A5ACQ7_VITVI Putative uncharacterized protein OS=Vitis... 60 6e-08
tr|A7NW85|A7NW85_VITVI Chromosome chr5 scaffold_2, whole genome ... 60 7e-08
tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis... 60 7e-08
tr|A5C6L3|A5C6L3_VITVI Putative uncharacterized protein OS=Vitis... 60 7e-08
tr|A5C2X4|A5C2X4_VITVI Putative uncharacterized protein OS=Vitis... 60 7e-08
tr|A5BPB3|A5BPB3_VITVI Putative uncharacterized protein OS=Vitis... 60 7e-08
tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis... 60 7e-08
tr|A5BB01|A5BB01_VITVI Putative uncharacterized protein OS=Vitis... 60 7e-08
tr|A5BA89|A5BA89_VITVI Putative uncharacterized protein OS=Vitis... 60 7e-08
tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis... 60 7e-08
tr|A5ATI4|A5ATI4_VITVI Putative uncharacterized protein OS=Vitis... 60 7e-08
tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis... 60 7e-08
tr|A5AN26|A5AN26_VITVI Putative uncharacterized protein OS=Vitis... 60 7e-08

>tr|Q5MG99|Q5MG99_IPOBA Hypothetical retrotransposon OS=Ipomoea
batatas PE=4 SV=1
Length = 1415

Score = 67.8 bits (164), Expect = 3e-10
Identities = 28/53 (52%), Positives = 42/53 (79%)
Frame = +3

Query: 3 SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKGLF 161
SP ++LK ++ ++VW GK SYDHLR+FGC+A+VHV + RSKLD+K+ + +F
Sbjct: 619 SPVIALKNEVPDKVWCGKDVSYDHLRVFGCKAFVHVPRDERSKLDSKTRQCIF 671


>tr|Q6RZV5|Q6RZV5_MUSAC Retrotransposon-like protein OS=Musa
acuminata GN=G9-pp3 PE=4 SV=1
Length = 521

Score = 65.1 bits (157), Expect = 2e-09
Identities = 30/64 (46%), Positives = 39/64 (60%)
Frame = +3

Query: 18 LKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKGLFXXXXXXXXXXXR 197
LKGD+ E VW GK SY+HLR+FGC+A+VH+ + RSKLD K+ K R
Sbjct: 355 LKGDVQERVWRGKDISYNHLRVFGCKAFVHIPKDERSKLDNKA-KACIFLGYGHEEFGYR 413

Query: 198 IWLP 209
+W P
Sbjct: 414 LWDP 417


>tr|Q9AU17|Q9AU17_SOLCI Polyprotein-like OS=Solanum chilense PE=4
SV=1
Length = 1328

Score = 62.8 bits (151), Expect = 9e-09
Identities = 27/53 (50%), Positives = 37/53 (69%)
Frame = +3

Query: 3 SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKGLF 161
SP + L+ DI E VW+ K SY HL++FGC+A+ HV E R+KLD KS+ +F
Sbjct: 625 SPSVPLEFDIPERVWTNKEMSYSHLKVFGCKAFAHVPKEQRTKLDDKSVPCIF 677


>tr|A5AHJ0|A5AHJ0_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_043469 PE=4 SV=1
Length = 798

Score = 62.4 bits (150), Expect = 1e-08
Identities = 28/53 (52%), Positives = 36/53 (67%)
Frame = +3

Query: 3 SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKGLF 161
SP L G +++EVW+G P Y LR+FGC AYVH+ E SKLDAKS + +F
Sbjct: 427 SPKAVLDGKVAKEVWTGSPIDYSSLRVFGCPAYVHIPNEEISKLDAKSRQCIF 479


>tr|A5C3L0|A5C3L0_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_007384 PE=4 SV=1
Length = 1317

Score = 61.6 bits (148), Expect = 2e-08
Identities = 24/48 (50%), Positives = 36/48 (75%)
Frame = +3

Query: 3 SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKS 146
+P + L+ D+S+ +WS SYDHLR+FGC+A+VH+ + RSKLD K+
Sbjct: 572 TPCVPLEFDVSDRIWSNNEISYDHLRVFGCKAFVHIPKDERSKLDVKT 619


>tr|A5ATZ8|A5ATZ8_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_000227 PE=4 SV=1
Length = 605

Score = 61.6 bits (148), Expect = 2e-08
Identities = 27/53 (50%), Positives = 34/53 (64%)
Frame = +3

Query: 3 SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKGLF 161
SP +L G + +EVW G P Y LR+FGC YVH+ E RSKLD KS + +F
Sbjct: 133 SPRATLHGKVVDEVWIGSPVDYSSLRLFGCPTYVHIPNEDRSKLDEKSRQCIF 185


>tr|A5C9D7|A5C9D7_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_007304 PE=4 SV=1
Length = 1362

Score = 61.2 bits (147), Expect = 2e-08
Identities = 24/48 (50%), Positives = 36/48 (75%)
Frame = +3

Query: 3 SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKS 146
+P + L+ D+ + +WS SYDHLR+FGC+A+VH+ + RSKLDAK+
Sbjct: 601 TPCVPLEFDVPDRIWSNNEISYDHLRVFGCKAFVHIPKDERSKLDAKT 648


>tr|A5B8G2|A5B8G2_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_010268 PE=4 SV=1
Length = 761

Score = 61.2 bits (147), Expect = 2e-08
Identities = 28/53 (52%), Positives = 37/53 (69%)
Frame = +3

Query: 3 SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKSIKGLF 161
SP +LKGDI E VW GK S++HLR+F C A+VHV + SKLD+K+ +F
Sbjct: 416 SPSYTLKGDIPERVWIGKFVSFEHLRVFXCWAFVHVPRDKXSKLDSKTKSCIF 468


>tr|A5B4R8|A5B4R8_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_018405 PE=4 SV=1
Length = 1302

Score = 61.2 bits (147), Expect = 2e-08
Identities = 24/48 (50%), Positives = 36/48 (75%)
Frame = +3

Query: 3 SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKS 146
+P + L+ D+ + +WS SYDHLR+FGC+A+VH+ + RSKLDAK+
Sbjct: 488 TPCVPLEFDVPDRIWSNNEISYDHLRVFGCKAFVHIPKDERSKLDAKT 535


>tr|A5BJP3|A5BJP3_VITVI Putative uncharacterized protein (Fragment)
OS=Vitis vinifera GN=VITISV_001876 PE=4 SV=1
Length = 1392

Score = 60.8 bits (146), Expect = 3e-08
Identities = 24/48 (50%), Positives = 36/48 (75%)
Frame = +3

Query: 3 SPHMSLKGDISEEVWSGKPASYDHLRIFGCEAYVHVRPESRSKLDAKS 146
+P + L+ D+ + +WS SYDHLR+FGC+A+VH+ + RSKLDAK+
Sbjct: 447 TPCVLLEFDVPDRIWSNNEISYDHLRVFGCKAFVHIPKDERSKLDAKT 494