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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917958
Clone id YMU001_000107_H04
Library
Length 390
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000107_H04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GACAAAGACAGAGGTCTCTCACTCCTCAAGCCAATCACTGTAGTCCGGATAATGGTGGTG
CAGAAAAGGTGAAATCTTCTGACAAAGTGGACAAAGTGAATTCCCAAGACGAGTGCCTTG
GTGATTCTGAGAGATGCCATATGTGCGAAAAACTAACCGCAGAGTGGACAGAGCGTGAGA
ATGAGTGGATGTGTGTGCTGGAAGAATTGCGGGTGGAAGTTGAAGAGTATAGACAGCTTT
CAGAGAAGAGGAAGCATGAGGCAACAGGGCATCAACGGTGTGCCGATGACATGAAAGATG
CTCTTCAAATGGCTATGGAAGGGCATGCCCGACTGCTTGATTAATATGCTGAGCTTCACG
AGAAGCACATTGGTTTGCTGGCAAAGCATA
■■Homology search results ■■ -
sp_hit_id Q9BYN7
Definition sp|Q9BYN7|ZN341_HUMAN Zinc finger protein 341 OS=Homo sapiens
Align length 99
Score (bit) 33.5
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917958|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_H04.
         (390 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9BYN7|ZN341_HUMAN Zinc finger protein 341 OS=Homo sapiens GN...    33   0.34 
sp|Q8CIR4|TRPM6_MOUSE Transient receptor potential cation channe...    30   4.9  
sp|Q9BX84|TRPM6_HUMAN Transient receptor potential cation channe...    29   6.4  
sp|Q6UY87|BEST1_MACFA Bestrophin-1 OS=Macaca fascicularis GN=BES...    29   8.4  
sp|P63043|STMN4_RAT Stathmin-4 OS=Rattus norvegicus GN=Stmn4 PE=...    29   8.4  
sp|Q5R4C5|STMN4_PONAB Stathmin-4 OS=Pongo abelii GN=STMN4 PE=2 SV=1    29   8.4  
sp|P63042|STMN4_MOUSE Stathmin-4 OS=Mus musculus GN=Stmn4 PE=2 SV=1    29   8.4  
sp|Q9H169|STMN4_HUMAN Stathmin-4 OS=Homo sapiens GN=STMN4 PE=2 SV=1    29   8.4  

>sp|Q9BYN7|ZN341_HUMAN Zinc finger protein 341 OS=Homo sapiens
           GN=ZNF341 PE=2 SV=2
          Length = 854

 Score = 33.5 bits (75), Expect = 0.34
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 9/99 (9%)
 Frame = -1

Query: 309 FEEHLSCHRHTVDALLPHASSSLKAVYTL---QLPPAILPAHTSTHSHALSTLRLVFRTY 139
           F EH+  H+  +            ++Y L   Q   ++LP H+    +A+         Y
Sbjct: 490 FLEHIKSHQEELSYRCHLCGKDFPSLYDLGVHQYSHSLLPQHSPKKDNAVYKCVKCVNKY 549

Query: 138 GISQ---NHQGTRLGNSLCPLCQKISP---FLHHHYPDY 40
              +   +H  T   N  CP CQK+ P   +L  H P +
Sbjct: 550 STPEALEHHLQTATHNFPCPHCQKVFPCERYLRRHLPTH 588


>sp|Q8CIR4|TRPM6_MOUSE Transient receptor potential cation channel
           subfamily M member 6 OS=Mus musculus GN=Trpm6 PE=2 SV=1
          Length = 2028

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 285 RHTVDALLPHASSSLKAVYTLQLPP 211
           +H  DAL  H+S SL+ ++T+ +PP
Sbjct: 176 KHVGDALKAHSSKSLRKIWTVGIPP 200


>sp|Q9BX84|TRPM6_HUMAN Transient receptor potential cation channel
           subfamily M member 6 OS=Homo sapiens GN=TRPM6 PE=1 SV=2
          Length = 2022

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -1

Query: 285 RHTVDALLPHASSSLKAVYTLQLPP 211
           +H  DAL  H+S SL+ ++T+ +PP
Sbjct: 185 KHVGDALKSHSSHSLRKIWTVGIPP 209


>sp|Q6UY87|BEST1_MACFA Bestrophin-1 OS=Macaca fascicularis GN=BEST1
           PE=2 SV=1
          Length = 585

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 15/62 (24%), Positives = 32/62 (51%)
 Frame = +1

Query: 106 KTSALVILRDAICAKN*PQSGQSVRMSGCVCWKNCGWKLKSIDSFQRRGSMRQQGINGVP 285
           +T  L   R+++  +  P++ ++V+ +      N  WKLK++D+F+     ++ G    P
Sbjct: 409 RTKLLWPKRESLLHEGLPKNHKAVKQNVRGLEDNKAWKLKAVDAFKSAPLYQRPGYYSAP 468

Query: 286 MT 291
            T
Sbjct: 469 QT 470


>sp|P63043|STMN4_RAT Stathmin-4 OS=Rattus norvegicus GN=Stmn4 PE=1
           SV=1
          Length = 189

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +3

Query: 231 RQLSEKRKHEATGHQRCADDMKDALQMAMEGHARLLD*YAELHEKHIGLL 380
           + L+EKR+HE    Q+  ++  + ++MA E  A+ ++   E  E H+  +
Sbjct: 114 KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAM 163


>sp|Q5R4C5|STMN4_PONAB Stathmin-4 OS=Pongo abelii GN=STMN4 PE=2 SV=1
          Length = 189

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +3

Query: 231 RQLSEKRKHEATGHQRCADDMKDALQMAMEGHARLLD*YAELHEKHIGLL 380
           + L+EKR+HE    Q+  ++  + ++MA E  A+ ++   E  E H+  +
Sbjct: 114 KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAM 163


>sp|P63042|STMN4_MOUSE Stathmin-4 OS=Mus musculus GN=Stmn4 PE=2 SV=1
          Length = 189

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +3

Query: 231 RQLSEKRKHEATGHQRCADDMKDALQMAMEGHARLLD*YAELHEKHIGLL 380
           + L+EKR+HE    Q+  ++  + ++MA E  A+ ++   E  E H+  +
Sbjct: 114 KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAM 163


>sp|Q9H169|STMN4_HUMAN Stathmin-4 OS=Homo sapiens GN=STMN4 PE=2 SV=1
          Length = 189

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +3

Query: 231 RQLSEKRKHEATGHQRCADDMKDALQMAMEGHARLLD*YAELHEKHIGLL 380
           + L+EKR+HE    Q+  ++  + ++MA E  A+ ++   E  E H+  +
Sbjct: 114 KHLAEKREHEREVIQKAIEENNNFIKMAKEKLAQKMESNKENREAHLAAM 163
tr_hit_id A7Q722
Definition tr|A7Q722|A7Q722_VITVI Chromosome chr5 scaffold_58, whole genome shotgun sequence OS=Vitis vinifera
Align length 84
Score (bit) 79.7
E-value 7.0e-14
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917958|Adiantum capillus-veneris mRNA, clone:
YMU001_000107_H04.
         (390 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7Q722|A7Q722_VITVI Chromosome chr5 scaffold_58, whole genome...    80   7e-14
tr|Q9LDN0|Q9LDN0_ARATH Phragmoplast-associated kinesin-related p...    76   7e-13
tr|O23274|O23274_ARATH Kinesin like protein OS=Arabidopsis thali...    76   7e-13
tr|Q9LUG0|Q9LUG0_ARATH Kinesin-like protein OS=Arabidopsis thali...    76   1e-12
tr|Q8L7Y8|Q8L7Y8_ARATH AT3g23670/MDB19_16 (Phragmoplast-associat...    76   1e-12
tr|Q2V3T3|Q2V3T3_ARATH Uncharacterized protein At3g23670.2 OS=Ar...    76   1e-12
tr|B8ASI8|B8ASI8_ORYSI Putative uncharacterized protein OS=Oryza...    71   2e-11
tr|Q9LLF1|Q9LLF1_ORYSJ Os04g0350300 protein (Fragment) OS=Oryza ...    70   4e-11
tr|Q7XKR9|Q7XKR9_ORYSA OSJNBa0038P21.12 protein (OSIGBa0144C23.2...    70   4e-11
tr|B8Q8A4|B8Q8A4_ORYSI SKIP interacting protein 18 (Fragment) OS...    70   4e-11
tr|B8ASI2|B8ASI2_ORYSI Putative uncharacterized protein OS=Oryza...    70   4e-11
tr|A3ASP2|A3ASP2_ORYSJ Putative uncharacterized protein OS=Oryza...    70   4e-11
tr|Q8GZU1|Q8GZU1_SOLLC Kinesin related protein OS=Solanum lycope...    66   1e-09
tr|Q6F2U4|Q6F2U4_ORYSJ Putative kinesin heavy chain (Fragment) O...    64   3e-09
tr|Q5W6L9|Q5W6L9_ORYSJ Os03g0587200 protein OS=Oryza sativa subs...    64   3e-09
tr|B8AL84|B8AL84_ORYSI Putative uncharacterized protein OS=Oryza...    64   3e-09
tr|A3AK00|A3AK00_ORYSJ Putative uncharacterized protein OS=Oryza...    64   3e-09
tr|Q93XF4|Q93XF4_MAIZE Kinesin heavy chain (Fragment) OS=Zea may...    59   2e-07
tr|A7P0F8|A7P0F8_VITVI Chromosome chr19 scaffold_4, whole genome...    59   2e-07
tr|A5C201|A5C201_VITVI Putative uncharacterized protein OS=Vitis...    59   2e-07
tr|Q6K765|Q6K765_ORYSJ Putative phragmoplast-associated kinesin-...    58   3e-07
tr|B8Q8B3|B8Q8B3_ORYSI SKIP interacting protein 27 (Fragment) OS...    58   3e-07
tr|A3A702|A3A702_ORYSJ Putative uncharacterized protein OS=Oryza...    58   3e-07
tr|A2X4Z1|A2X4Z1_ORYSI Putative uncharacterized protein OS=Oryza...    58   3e-07
tr|Q9FJ59|Q9FJ59_ARATH Arabidopsis thaliana genomic DNA, chromos...    49   1e-04
tr|Q5XUZ2|Q5XUZ2_ARATH Putative uncharacterized protein OS=Arabi...    49   1e-04
tr|Q5XUZ1|Q5XUZ1_ARATH Putative uncharacterized protein OS=Arabi...    49   1e-04
tr|Q2V2Y2|Q2V2Y2_ARATH Uncharacterized protein At5g55520.2 OS=Ar...    49   1e-04
tr|Q9LJY3|Q9LJY3_ARATH Similarity to kinesin OS=Arabidopsis thal...    48   2e-04
tr|Q9SU98|Q9SU98_ARATH Putative uncharacterized protein AT4g2666...    47   6e-04

>tr|A7Q722|A7Q722_VITVI Chromosome chr5 scaffold_58, whole genome
            shotgun sequence OS=Vitis vinifera GN=GSVIVT00031645001
            PE=3 SV=1
          Length = 1295

 Score = 79.7 bits (195), Expect = 7e-14
 Identities = 38/84 (45%), Positives = 56/84 (66%), Gaps = 3/84 (3%)
 Frame = +3

Query: 147  EKLTAE---WTERENEWMCXXXXXXXXXXXYRQLSEKRKHEATGHQRCADDMKDALQMAM 317
            EKL  E   WTE E++W+             R L+EK+K E    ++CA+++K+A+Q+AM
Sbjct: 1022 EKLEQERLRWTETESKWISLSEELRDELEASRSLAEKQKVELDSEKKCAEELKEAMQLAM 1081

Query: 318  EGHARLLD*YAELHEKHIGLLAKH 389
            EGHAR+L+ YAEL E+H+ LLA+H
Sbjct: 1082 EGHARMLEQYAELEERHMALLARH 1105


>tr|Q9LDN0|Q9LDN0_ARATH Phragmoplast-associated kinesin-related
            protein 1 OS=Arabidopsis thaliana GN=PAKRP1 PE=2 SV=1
          Length = 1292

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 34/75 (45%), Positives = 49/75 (65%)
 Frame = +3

Query: 165  WTERENEWMCXXXXXXXXXXXYRQLSEKRKHEATGHQRCADDMKDALQMAMEGHARLLD* 344
            WTE E +W+             + L  K+KHE    +RC +++K+A+QMAMEGHAR+L+ 
Sbjct: 1036 WTEAETKWISLSEELRTELEASKALINKQKHELEIEKRCGEELKEAMQMAMEGHARMLEQ 1095

Query: 345  YAELHEKHIGLLAKH 389
            YA+L EKH+ LLA+H
Sbjct: 1096 YADLEEKHMQLLARH 1110


>tr|O23274|O23274_ARATH Kinesin like protein OS=Arabidopsis thaliana
            GN=dl3115c PE=2 SV=1
          Length = 1662

 Score = 76.3 bits (186), Expect = 7e-13
 Identities = 34/75 (45%), Positives = 49/75 (65%)
 Frame = +3

Query: 165  WTERENEWMCXXXXXXXXXXXYRQLSEKRKHEATGHQRCADDMKDALQMAMEGHARLLD* 344
            WTE E +W+             + L  K+KHE    +RC +++K+A+QMAMEGHAR+L+ 
Sbjct: 1027 WTEAETKWISLSEELRTELEASKALINKQKHELEIEKRCGEELKEAMQMAMEGHARMLEQ 1086

Query: 345  YAELHEKHIGLLAKH 389
            YA+L EKH+ LLA+H
Sbjct: 1087 YADLEEKHMQLLARH 1101


>tr|Q9LUG0|Q9LUG0_ARATH Kinesin-like protein OS=Arabidopsis thaliana
            PE=3 SV=1
          Length = 1268

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 35/81 (43%), Positives = 51/81 (62%)
 Frame = +3

Query: 147  EKLTAEWTERENEWMCXXXXXXXXXXXYRQLSEKRKHEATGHQRCADDMKDALQMAMEGH 326
            E+    WTE E+ W+             R L EK+K E    +RCA+++ +A+QMAM+GH
Sbjct: 1000 EQERLRWTEAESNWISLAEELRTELDTNRLLMEKQKRELDTEKRCAEELTEAMQMAMQGH 1059

Query: 327  ARLLD*YAELHEKHIGLLAKH 389
            AR+++ YA+L EKHI LLA+H
Sbjct: 1060 ARMIEQYADLEEKHIQLLARH 1080


>tr|Q8L7Y8|Q8L7Y8_ARATH AT3g23670/MDB19_16 (Phragmoplast-associated
            kinesin-related protein 1-like protein) OS=Arabidopsis
            thaliana GN=PAKRP1L PE=2 SV=1
          Length = 1313

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 35/81 (43%), Positives = 51/81 (62%)
 Frame = +3

Query: 147  EKLTAEWTERENEWMCXXXXXXXXXXXYRQLSEKRKHEATGHQRCADDMKDALQMAMEGH 326
            E+    WTE E+ W+             R L EK+K E    +RCA+++ +A+QMAM+GH
Sbjct: 1045 EQERLRWTEAESNWISLAEELRTELDTNRLLMEKQKRELDTEKRCAEELTEAMQMAMQGH 1104

Query: 327  ARLLD*YAELHEKHIGLLAKH 389
            AR+++ YA+L EKHI LLA+H
Sbjct: 1105 ARMIEQYADLEEKHIQLLARH 1125


>tr|Q2V3T3|Q2V3T3_ARATH Uncharacterized protein At3g23670.2
           OS=Arabidopsis thaliana GN=At3g23670 PE=3 SV=1
          Length = 971

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 35/81 (43%), Positives = 51/81 (62%)
 Frame = +3

Query: 147 EKLTAEWTERENEWMCXXXXXXXXXXXYRQLSEKRKHEATGHQRCADDMKDALQMAMEGH 326
           E+    WTE E+ W+             R L EK+K E    +RCA+++ +A+QMAM+GH
Sbjct: 703 EQERLRWTEAESNWISLAEELRTELDTNRLLMEKQKRELDTEKRCAEELTEAMQMAMQGH 762

Query: 327 ARLLD*YAELHEKHIGLLAKH 389
           AR+++ YA+L EKHI LLA+H
Sbjct: 763 ARMIEQYADLEEKHIQLLARH 783


>tr|B8ASI8|B8ASI8_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_15463 PE=4 SV=1
          Length = 1085

 Score = 71.2 bits (173), Expect = 2e-11
 Identities = 31/78 (39%), Positives = 50/78 (64%)
 Frame = +3

Query: 156  TAEWTERENEWMCXXXXXXXXXXXYRQLSEKRKHEATGHQRCADDMKDALQMAMEGHARL 335
            T++W E E++W+             + L  + + E    ++C++++K+ALQ AM+GHAR+
Sbjct: 832  TSDWAEAESKWVTLTEELRVELEANKSLVGRLRSELESEKKCSEEVKEALQTAMQGHARI 891

Query: 336  LD*YAELHEKHIGLLAKH 389
            L+ YAEL E+HIGLLA H
Sbjct: 892  LEQYAELEERHIGLLAMH 909


>tr|Q9LLF1|Q9LLF1_ORYSJ Os04g0350300 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os04g0350300 PE=2 SV=1
          Length = 817

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 31/78 (39%), Positives = 49/78 (62%)
 Frame = +3

Query: 156 TAEWTERENEWMCXXXXXXXXXXXYRQLSEKRKHEATGHQRCADDMKDALQMAMEGHARL 335
           T +W E E++W+             + L  + + E    ++C++++K+ALQ AM+GHAR+
Sbjct: 564 TPDWAEAESKWVTLTEELRVELEANKSLVGRLRSELESEKKCSEEVKEALQTAMQGHARI 623

Query: 336 LD*YAELHEKHIGLLAKH 389
           L+ YAEL E+HIGLLA H
Sbjct: 624 LEQYAELEERHIGLLAMH 641


>tr|Q7XKR9|Q7XKR9_ORYSA OSJNBa0038P21.12 protein (OSIGBa0144C23.2
            protein) OS=Oryza sativa GN=OSJNBa0038P21.12 PE=3 SV=1
          Length = 1094

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 31/78 (39%), Positives = 49/78 (62%)
 Frame = +3

Query: 156  TAEWTERENEWMCXXXXXXXXXXXYRQLSEKRKHEATGHQRCADDMKDALQMAMEGHARL 335
            T +W E E++W+             + L  + + E    ++C++++K+ALQ AM+GHAR+
Sbjct: 841  TPDWAEAESKWVTLTEELRVELEANKSLVGRLRSELESEKKCSEEVKEALQTAMQGHARI 900

Query: 336  LD*YAELHEKHIGLLAKH 389
            L+ YAEL E+HIGLLA H
Sbjct: 901  LEQYAELEERHIGLLAMH 918


>tr|B8Q8A4|B8Q8A4_ORYSI SKIP interacting protein 18 (Fragment)
           OS=Oryza sativa subsp. indica GN=SIP18 PE=2 SV=1
          Length = 597

 Score = 70.5 bits (171), Expect = 4e-11
 Identities = 31/78 (39%), Positives = 49/78 (62%)
 Frame = +3

Query: 156 TAEWTERENEWMCXXXXXXXXXXXYRQLSEKRKHEATGHQRCADDMKDALQMAMEGHARL 335
           T +W E E++W+             + L  + + E    ++C++++K+ALQ AM+GHAR+
Sbjct: 344 TPDWAEAESKWVTLTEELRVELEANKSLVGRLRSELESEKKCSEEVKEALQTAMQGHARI 403

Query: 336 LD*YAELHEKHIGLLAKH 389
           L+ YAEL E+HIGLLA H
Sbjct: 404 LEQYAELEERHIGLLAMH 421