BP917960 |
Clone id |
YMU001_000107_H07 |
Library |
YMU01 |
Length |
258 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000107_H07. |
Accession |
BP917960 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
TGTGACAACCCAAAATGTCAGGGTCTCAAAAAGGCTGTCGAATTTGACATTCAGCTTGAA TCTGAGAAGTGTGTAAAATTGGCTCCATCTGCCACAAGCTTTACACAAGCAGTCCCGTGG AAGGCGAGTATTGAGCTTGGCGAGGATCACAAGGAGCTTGAAGCGGAGCTGAAGCGGATG GCGCCACCCAATGGCAGGGCAGTTCTTGTATTTAGATCTCCATGCGGATGCCCGATTGCT CGCATGGAGGTATGGGGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P0C8Q9 |
Definition |
sp|P0C8Q9|Y5902_ARATH Uncharacterized protein At5g19025, chloroplastic OS=Arabidopsis thaliana |
Align length |
86 |
Score (bit) |
107.0 |
E-value |
2.0e-23 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917960|Adiantum capillus-veneris mRNA, clone: YMU001_000107_H07. (258 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P0C8Q9|Y5902_ARATH Uncharacterized protein At5g19025, chlorop... 107 2e-23 sp|Q9JKB0|HCN1_RAT Potassium/sodium hyperpolarization-activated ... 31 2.2 sp|Q4R7Q1|NSUN7_MACFA Putative methyltransferase NSUN7 OS=Macaca... 30 2.8 sp|Q8NE18|NSUN7_HUMAN Putative methyltransferase NSUN7 OS=Homo s... 29 6.3 sp|Q00657|CSPG4_RAT Chondroitin sulfate proteoglycan 4 OS=Rattus... 29 6.3 sp|Q24025|SOG_DROME Dorsal-ventral patterning protein Sog OS=Dro... 29 8.2 sp|Q5R9R9|HEM1_PONAB 5-aminolevulinate synthase, nonspecific, mi... 29 8.2 sp|P07997|HEM1_CHICK 5-aminolevulinate synthase, nonspecific, mi... 29 8.2 sp|P20130|V70K_OYMV 66 kDa protein OS=Ononis yellow mosaic virus... 29 8.2 sp|P90518|GSP_CRIFA Glutathionylspermidine synthase OS=Crithidia... 29 8.2
>sp|P0C8Q9|Y5902_ARATH Uncharacterized protein At5g19025, chloroplastic OS=Arabidopsis thaliana GN=At5g19025 PE=2 SV=1 Length = 321
Score = 107 bits (267), Expect = 2e-23 Identities = 48/86 (55%), Positives = 64/86 (74%) Frame = +1
Query: 1 CDNPKCQGLKKAVEFDIQLESEKCVKLAPSATSFTQAVPWKASIELGEDHKELEAELKRM 180 C NPKC+G+KKA+EFD+QL++E+CVK + +PWK E D++ L AEL++M Sbjct: 153 CRNPKCKGMKKAMEFDLQLQTEECVK--SGSVKEIDRLPWKGGSESNPDYECLRAELRKM 210
Query: 181 APPNGRAVLVFRSPCGCPIARMEVWG 258 AP NGRAVL+FRS CGCPIA++E WG Sbjct: 211 APVNGRAVLIFRSKCGCPIAKLEGWG 236
>sp|Q9JKB0|HCN1_RAT Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1 OS=Rattus norvegicus GN=Hcn1 PE=2 SV=1 Length = 910
Score = 30.8 bits (68), Expect = 2.2 Identities = 15/48 (31%), Positives = 23/48 (47%) Frame = -3
Query: 199 PCHWVAPSASAPLQAPCDPRQAQYSPSTGLLV*SLWQMEPILHTSQIQ 56 PC + S P+Q+P R Y+ T + + Q +P L SQ+Q Sbjct: 685 PCSYTTAVCSPPIQSPLATRTFHYASPTASQLSLMQQPQPQLQQSQVQ 732
>sp|Q4R7Q1|NSUN7_MACFA Putative methyltransferase NSUN7 OS=Macaca fascicularis GN=NSUN7 PE=2 SV=1 Length = 702
Score = 30.4 bits (67), Expect = 2.8 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = -3
Query: 253 IPPCEQSGIRMEI*IQELPCHWVAPSASAPLQAP 152 +P GIR + Q L CHWVAP P P Sbjct: 642 MPFSSPQGIRSRMPTQHLYCHWVAPKPLVPTCLP 675
>sp|Q8NE18|NSUN7_HUMAN Putative methyltransferase NSUN7 OS=Homo sapiens GN=NSUN7 PE=2 SV=3 Length = 718
Score = 29.3 bits (64), Expect = 6.3 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = -3
Query: 253 IPPCEQSGIRMEI*IQELPCHWVAPSASAPLQAP 152 +P GIR + Q L C WVAP A P P Sbjct: 658 MPFSSPQGIRSRMPTQHLYCRWVAPKALVPTCLP 691
>sp|Q00657|CSPG4_RAT Chondroitin sulfate proteoglycan 4 OS=Rattus norvegicus GN=Cspg4 PE=1 SV=2 Length = 2326
Score = 29.3 bits (64), Expect = 6.3 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%) Frame = +2
Query: 8 TQNVRVSKR-LSNLTFSLNLRSV*NWLHLPQALHKQSRGRRVLSLARITRSLKRS*SGWR 184 T V+V + LSNL+F + ++ W+ + LH Q+ + L+ A + SL+ G Sbjct: 761 TLEVQVGQETLSNLSFPVTIQRATVWMLQLEPLHTQNPHQETLTSAHLEASLEEEGEGGP 820
Query: 185 HP 190 +P Sbjct: 821 YP 822
>sp|Q24025|SOG_DROME Dorsal-ventral patterning protein Sog OS=Drosophila melanogaster GN=sog PE=1 SV=1 Length = 1038
Score = 28.9 bits (63), Expect = 8.2 Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 13/97 (13%) Frame = +1
Query: 1 CDNPKCQGLK-KAVEFDIQLESEKCVKLAPS------------ATSFTQAVPWKASIELG 141 C+ KC LK K+ E +Q + E C P AT+ T + + LG Sbjct: 776 CEVIKCPALKCKSTEQLLQRDGECCPSCVPKKEAADYSAQSSPATNATDLLQQRRGCRLG 835
Query: 142 EDHKELEAELKRMAPPNGRAVLVFRSPCGCPIARMEV 252 E A PPNG + C C +E+ Sbjct: 836 EQFHPAGASWHPFLPPNGFDTC---TTCSCDPLTLEI 869
>sp|Q5R9R9|HEM1_PONAB 5-aminolevulinate synthase, nonspecific, mitochondrial OS=Pongo abelii GN=ALAS1 PE=2 SV=1 Length = 640
Score = 28.9 bits (63), Expect = 8.2 Identities = 17/45 (37%), Positives = 24/45 (53%) Frame = +1
Query: 61 SEKCVKLAPSATSFTQAVPWKASIELGEDHKELEAELKRMAPPNG 195 + KC LA +V KAS+EL ED +E+ A K +A +G Sbjct: 105 ASKCPFLAAQMNQRGSSVFCKASLELQEDVQEMNAVRKEVAETSG 149
>sp|P07997|HEM1_CHICK 5-aminolevulinate synthase, nonspecific, mitochondrial OS=Gallus gallus GN=ALAS1 PE=2 SV=2 Length = 635
Score = 28.9 bits (63), Expect = 8.2 Identities = 16/42 (38%), Positives = 23/42 (54%) Frame = +1
Query: 49 IQLESEKCVKLAPSATSFTQAVPWKASIELGEDHKELEAELK 174 +Q + KC LA + V KAS+EL ED KE++ + K Sbjct: 94 VQSSATKCPFLAAQMNHKSSNVFCKASLELQEDVKEMQVDRK 135
>sp|P20130|V70K_OYMV 66 kDa protein OS=Ononis yellow mosaic virus PE=3 SV=1 Length = 597
Score = 28.9 bits (63), Expect = 8.2 Identities = 12/26 (46%), Positives = 16/26 (61%) Frame = -3
Query: 199 PCHWVAPSASAPLQAPCDPRQAQYSP 122 P H V S+ APLQ+ C PR+ + P Sbjct: 158 PLHSVPLSSEAPLQSSCSPRKLLHRP 183
>sp|P90518|GSP_CRIFA Glutathionylspermidine synthase OS=Crithidia fasciculata GN=GSP PE=1 SV=2 Length = 719
Score = 28.9 bits (63), Expect = 8.2 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Frame = -3
Query: 241 EQSGIRMEI*IQELPCHWV--APSASAPLQAPCD-PRQAQYSPSTGLLV*SLWQMEPILH 71 EQ+G R ++ ++ + + PS +APL PCD P L+V W + +LH Sbjct: 445 EQAGFRTKLCVKLVNFRYRDGPPSNAAPLATPCDHPTIVDGEDEEVLMVWKTWSWDTVLH 504
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7P0C0 |
Definition |
tr|A7P0C0|A7P0C0_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
86 |
Score (bit) |
122.0 |
E-value |
1.0e-26 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917960|Adiantum capillus-veneris mRNA, clone: YMU001_000107_H07. (258 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7P0C0|A7P0C0_VITVI Chromosome chr6 scaffold_3, whole genome ... 122 1e-26 tr|A5B768|A5B768_VITVI Putative uncharacterized protein OS=Vitis... 122 1e-26 tr|Q5N757|Q5N757_ORYSJ Pentatricopeptide (PPR) repeat-containing... 121 2e-26 tr|A2ZYY4|A2ZYY4_ORYSJ Putative uncharacterized protein OS=Oryza... 121 2e-26 tr|A2WWB6|A2WWB6_ORYSI Putative uncharacterized protein OS=Oryza... 121 2e-26 tr|B6SQQ9|B6SQQ9_MAIZE Putative uncharacterized protein OS=Zea m... 117 3e-25 tr|Q9M8K0|Q9M8K0_ARATH F28L1.12 protein (At3g06180) OS=Arabidops... 114 2e-24 tr|Q6AVN3|Q6AVN3_ORYSJ Os05g0488500 protein OS=Oryza sativa subs... 112 9e-24 tr|B8AZH1|B8AZH1_ORYSI Putative uncharacterized protein OS=Oryza... 112 9e-24 tr|A7NWE9|A7NWE9_VITVI Chromosome chr5 scaffold_2, whole genome ... 110 5e-23 tr|A5ADW3|A5ADW3_VITVI Putative uncharacterized protein OS=Vitis... 110 5e-23 tr|A9PHB0|A9PHB0_POPTR Putative uncharacterized protein OS=Popul... 103 6e-21 tr|A7PMX8|A7PMX8_VITVI Chromosome chr14 scaffold_21, whole genom... 100 6e-20 tr|Q9LXF6|Q9LXF6_ARATH Putative uncharacterized protein F8M21_15... 97 3e-19 tr|Q8VYH4|Q8VYH4_ARATH AT5g15260/F8M21_150 (Putative uncharacter... 97 3e-19 tr|Q60ER4|Q60ER4_ORYSJ Putative uncharacterized protein OJ1764_D... 97 3e-19 tr|Q0DIF5|Q0DIF5_ORYSJ Os05g0393200 protein OS=Oryza sativa subs... 97 3e-19 tr|B8AY02|B8AY02_ORYSI Putative uncharacterized protein OS=Oryza... 97 3e-19 tr|A3B3R0|A3B3R0_ORYSJ Putative uncharacterized protein OS=Oryza... 97 3e-19 tr|B6U6F0|B6U6F0_MAIZE Putative uncharacterized protein OS=Zea m... 97 4e-19 tr|Q6NLZ8|Q6NLZ8_ARATH At3g01170 (Putative uncharacterized prote... 93 6e-18 tr|A2Q236|A2Q236_MEDTR Putative uncharacterized protein OS=Medic... 80 5e-14 tr|Q9MAC7|Q9MAC7_ARATH T4P13.14 protein OS=Arabidopsis thaliana ... 80 7e-14 tr|A3B5B4|A3B5B4_ORYSJ Putative uncharacterized protein OS=Oryza... 40 4e-04 tr|A6U8C9|A6U8C9_SINMW Nitroreductase OS=Sinorhizobium medicae (... 35 2.4
>tr|A7P0C0|A7P0C0_VITVI Chromosome chr6 scaffold_3, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00024847001 PE=4 SV=1 Length = 223
Score = 122 bits (305), Expect = 1e-26 Identities = 58/86 (67%), Positives = 65/86 (75%) Frame = +1
Query: 1 CDNPKCQGLKKAVEFDIQLESEKCVKLAPSATSFTQAVPWKASIELGEDHKELEAELKRM 180 C NP C+GL+KAVEFDIQLESE+CVK P + +ELGEDHKELEAELKRM Sbjct: 132 CGNPYCKGLRKAVEFDIQLESEECVKYLPPVPKNAYGLQ---PLELGEDHKELEAELKRM 188
Query: 181 APPNGRAVLVFRSPCGCPIARMEVWG 258 AP NGR VL+FR+PCGCP RMEVWG Sbjct: 189 APLNGRTVLIFRAPCGCPAGRMEVWG 214
>tr|A5B768|A5B768_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_037529 PE=4 SV=1 Length = 228
Score = 122 bits (305), Expect = 1e-26 Identities = 58/86 (67%), Positives = 65/86 (75%) Frame = +1
Query: 1 CDNPKCQGLKKAVEFDIQLESEKCVKLAPSATSFTQAVPWKASIELGEDHKELEAELKRM 180 C NP C+GL+KAVEFDIQLESE+CVK P + +ELGEDHKELEAELKRM Sbjct: 137 CGNPYCKGLRKAVEFDIQLESEECVKYLPPVPKNAYGLQ---PLELGEDHKELEAELKRM 193
Query: 181 APPNGRAVLVFRSPCGCPIARMEVWG 258 AP NGR VL+FR+PCGCP RMEVWG Sbjct: 194 APLNGRTVLIFRAPCGCPAGRMEVWG 219
>tr|Q5N757|Q5N757_ORYSJ Pentatricopeptide (PPR) repeat-containing protein-like OS=Oryza sativa subsp. japonica GN=OSJNBa0085D07.36 PE=4 SV=1 Length = 218
Score = 121 bits (303), Expect = 2e-26 Identities = 57/88 (64%), Positives = 69/88 (78%), Gaps = 2/88 (2%) Frame = +1
Query: 1 CDNPKCQGLKKAVEFDIQLESEKCVK--LAPSATSFTQAVPWKASIELGEDHKELEAELK 174 C P+C+GLKKAVEFDIQLE+E+CV+ AP+A S A +ELG+ H+ELEAEL+ Sbjct: 122 CGKPRCRGLKKAVEFDIQLETEECVRGHPAPAARSALLAAAGAHPVELGDAHRELEAELR 181
Query: 175 RMAPPNGRAVLVFRSPCGCPIARMEVWG 258 +MAPPNGR VL+FRSPCGCP RMEVWG Sbjct: 182 KMAPPNGRTVLIFRSPCGCPKGRMEVWG 209
>tr|A2ZYY4|A2ZYY4_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_003756 PE=4 SV=1 Length = 167
Score = 121 bits (303), Expect = 2e-26 Identities = 57/88 (64%), Positives = 69/88 (78%), Gaps = 2/88 (2%) Frame = +1
Query: 1 CDNPKCQGLKKAVEFDIQLESEKCVK--LAPSATSFTQAVPWKASIELGEDHKELEAELK 174 C P+C+GLKKAVEFDIQLE+E+CV+ AP+A S A +ELG+ H+ELEAEL+ Sbjct: 71 CGKPRCRGLKKAVEFDIQLETEECVRGHPAPAARSALLAAAGAHPVELGDAHRELEAELR 130
Query: 175 RMAPPNGRAVLVFRSPCGCPIARMEVWG 258 +MAPPNGR VL+FRSPCGCP RMEVWG Sbjct: 131 KMAPPNGRTVLIFRSPCGCPKGRMEVWG 158
>tr|A2WWB6|A2WWB6_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_04197 PE=4 SV=1 Length = 167
Score = 121 bits (303), Expect = 2e-26 Identities = 57/88 (64%), Positives = 69/88 (78%), Gaps = 2/88 (2%) Frame = +1
Query: 1 CDNPKCQGLKKAVEFDIQLESEKCVK--LAPSATSFTQAVPWKASIELGEDHKELEAELK 174 C P+C+GLKKAVEFDIQLE+E+CV+ AP+A S A +ELG+ H+ELEAEL+ Sbjct: 71 CGKPRCRGLKKAVEFDIQLETEECVRGHPAPAARSALLAAAGAHPVELGDAHRELEAELR 130
Query: 175 RMAPPNGRAVLVFRSPCGCPIARMEVWG 258 +MAPPNGR VL+FRSPCGCP RMEVWG Sbjct: 131 KMAPPNGRTVLIFRSPCGCPKGRMEVWG 158
>tr|B6SQQ9|B6SQQ9_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 213
Score = 117 bits (293), Expect = 3e-25 Identities = 54/88 (61%), Positives = 68/88 (77%), Gaps = 2/88 (2%) Frame = +1
Query: 1 CDNPKCQGLKKAVEFDIQLESEKCVK--LAPSATSFTQAVPWKASIELGEDHKELEAELK 174 C P+C+GLKKAVEFDIQLE+E+CV+ P+A S A +ELG++ +ELEAEL+ Sbjct: 117 CGKPRCRGLKKAVEFDIQLETEECVRGRPGPTARSALLAAAGARPVELGDEQRELEAELR 176
Query: 175 RMAPPNGRAVLVFRSPCGCPIARMEVWG 258 +MAPPNGR VL+FR+PCGCP RMEVWG Sbjct: 177 KMAPPNGRTVLIFRAPCGCPKGRMEVWG 204
>tr|Q9M8K0|Q9M8K0_ARATH F28L1.12 protein (At3g06180) OS=Arabidopsis thaliana GN=At3g06180 PE=2 SV=1 Length = 241
Score = 114 bits (285), Expect = 2e-24 Identities = 52/86 (60%), Positives = 66/86 (76%) Frame = +1
Query: 1 CDNPKCQGLKKAVEFDIQLESEKCVKLAPSATSFTQAVPWKASIELGEDHKELEAELKRM 180 C NPKC+GLKKA+EFD+QL++E+CVK AT +PWK E D++ L AEL+RM Sbjct: 135 CRNPKCKGLKKAMEFDLQLQTEECVK--SGATKEIDRLPWKGGSESNPDYECLRAELRRM 192
Query: 181 APPNGRAVLVFRSPCGCPIARMEVWG 258 APPNGRAVL+FRS CGCP+A++E WG Sbjct: 193 APPNGRAVLLFRSRCGCPVAKLEGWG 218
>tr|Q6AVN3|Q6AVN3_ORYSJ Os05g0488500 protein OS=Oryza sativa subsp. japonica GN=OJ1119_H02.10 PE=2 SV=1 Length = 241
Score = 112 bits (280), Expect = 9e-24 Identities = 52/93 (55%), Positives = 66/93 (70%), Gaps = 7/93 (7%) Frame = +1
Query: 1 CDNPKCQGLKKAVEFDIQLESEKCVK-------LAPSATSFTQAVPWKASIELGEDHKEL 159 C P+C+GL+KAVEFDIQLE+E+CV+ P + A ++LG+ H+EL Sbjct: 140 CGKPRCRGLRKAVEFDIQLETEECVRGQQQRLLPLPGGRAALLAAAGARPVQLGDAHREL 199
Query: 160 EAELKRMAPPNGRAVLVFRSPCGCPIARMEVWG 258 EAEL++MAPPNGR VL+FRSPCGCP RMEVWG Sbjct: 200 EAELRKMAPPNGRTVLIFRSPCGCPKGRMEVWG 232
>tr|B8AZH1|B8AZH1_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_20410 PE=4 SV=1 Length = 241
Score = 112 bits (280), Expect = 9e-24 Identities = 52/93 (55%), Positives = 66/93 (70%), Gaps = 7/93 (7%) Frame = +1
Query: 1 CDNPKCQGLKKAVEFDIQLESEKCVK-------LAPSATSFTQAVPWKASIELGEDHKEL 159 C P+C+GL+KAVEFDIQLE+E+CV+ P + A ++LG+ H+EL Sbjct: 140 CGKPRCRGLRKAVEFDIQLETEECVRGQQQRLLPLPGGRAALLAAAGARPVQLGDAHREL 199
Query: 160 EAELKRMAPPNGRAVLVFRSPCGCPIARMEVWG 258 EAEL++MAPPNGR VL+FRSPCGCP RMEVWG Sbjct: 200 EAELRKMAPPNGRTVLIFRSPCGCPKGRMEVWG 232
>tr|A7NWE9|A7NWE9_VITVI Chromosome chr5 scaffold_2, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00019893001 PE=4 SV=1 Length = 226
Score = 110 bits (274), Expect = 5e-23 Identities = 48/86 (55%), Positives = 67/86 (77%) Frame = +1
Query: 1 CDNPKCQGLKKAVEFDIQLESEKCVKLAPSATSFTQAVPWKASIELGEDHKELEAELKRM 180 CDNP C+GLKKA+EFD+QL++E+C+K S++ +PWK E D++ L +EL++M Sbjct: 121 CDNPGCKGLKKAMEFDLQLQTEECLK---SSSKEIDVLPWKGGSEANPDYECLRSELRKM 177
Query: 181 APPNGRAVLVFRSPCGCPIARMEVWG 258 APPNGRAVL+FR+ CGCPIA++E WG Sbjct: 178 APPNGRAVLLFRARCGCPIAKLEGWG 203
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