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NBDC - LSDB Archive
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BP917964
Clone id YMU001_000108_A01
Library
Length 485
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_A01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AAATTTCTAGCCCGGGGTTTGTTGTGCTTAAGATTCCAAAAATACCAATATTTGCCATGG
TCGTACAATCTACATTGCTTTTTCAATAATCATATCAGTTAGATTAAGCTTTATACAACC
TTTAAGGTTTCAGAAACTGGAAACCTTACAGGTATGTTCAGTGAGAGTAACGGGAATAAA
TTATCTAGTACTGGGAATAGTAGTTGCTTGGGATGGATGCAAGATCGTCTCCTCATAAGG
GGTGTAGCTCATGGGGATGGATCCTCCATCCACCAGCGTGGTAGAGGTAGAAGCAGTGAG
GTGAGGTTCCTCATGATAACCATGAGAGAGTGTCATTGGAGGATCCTTCCTACTTTACAG
TGGGGTCTCCATTTCTTCCAAGGTCGAGCCACGGGACTCGCTTGTGTGGACAAACAATAT
AGGACCTTCACAAGGATAGTTCATTCCCAATTTCGTTTGCATTATGATTGATTGATCCCC
GGCAG
■■Homology search results ■■ -
sp_hit_id Q5DRA9
Definition sp|Q5DRA9|PCDGE_PANTR Protocadherin gamma-B2 OS=Pan troglodytes
Align length 81
Score (bit) 33.1
E-value 0.68
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917964|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_A01.
         (485 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5DRA9|PCDGE_PANTR Protocadherin gamma-B2 OS=Pan troglodytes ...    33   0.68 
sp|Q9Y5G2|PCDGE_HUMAN Protocadherin gamma-B2 OS=Homo sapiens GN=...    33   0.68 
sp|P58765|PSAB_PSINU Photosystem I P700 chlorophyll a apoprotein...    32   2.0  
sp|Q49CB2|PSAB_CUSSA Photosystem I P700 chlorophyll a apoprotein...    32   2.0  
sp|Q48NL9|SELU_PSE14 tRNA 2-selenouridine synthase OS=Pseudomona...    30   5.7  
sp|Q3J8R7|RL2_NITOC 50S ribosomal protein L2 OS=Nitrosococcus oc...    30   5.7  
sp|Q32RS4|PSAB_STAPU Photosystem I P700 chlorophyll a apoprotein...    30   5.7  
sp|A6MMC1|PSAB_CHLSC Photosystem I P700 chlorophyll a apoprotein...    30   5.7  
sp|Q1ACL3|PSAB_CHAVU Photosystem I P700 chlorophyll a apoprotein...    30   5.7  
sp|Q8M9V9|PSAB_CHAGL Photosystem I P700 chlorophyll a apoprotein...    30   5.7  
sp|P38739|WSC4_YEAST Cell wall integrity and stress response com...    30   7.5  
sp|P58386|PSAB_WHEAT Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|Q0ZJ21|PSAB_VITVI Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|P06407|PSAB_TOBAC Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|P06512|PSAB_SPIOL Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|Q2PMU2|PSAB_SOYBN Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|A1E9S3|PSAB_SORBI Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|Q27S51|PSAB_SOLTU Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|Q2MIA1|PSAB_SOLLC Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|Q2MII8|PSAB_SOLBU Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|Q6ENW4|PSAB_SACOF Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|Q6L399|PSAB_SACHY Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|Q3BAP1|PSAB_PHAAO Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|Q06FW4|PSAB_PELHO Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|Q68S07|PSAB_PANGI Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|P0C358|PSAB_ORYSJ Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|P0C357|PSAB_ORYSI Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|P0C356|PSAB_ORYSA Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|Q6ENH5|PSAB_ORYNI Photosystem I P700 chlorophyll a apoprotein...    30   7.5  
sp|Q9MTN7|PSAB_OENEH Photosystem I P700 chlorophyll a apoprotein...    30   7.5  

>sp|Q5DRA9|PCDGE_PANTR Protocadherin gamma-B2 OS=Pan troglodytes
           GN=PCDHGB2 PE=3 SV=1
          Length = 931

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
 Frame = -3

Query: 456 TKLGMNYPCE-------GP--ILFVHTSESRGSTLEEMETPL*SRKDPPMTLSHGYHEEP 304
           TK G  +P +       GP  +   H +++    L E +TP   RK P + L H    E 
Sbjct: 146 TKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPD-GRKYPELILQHSLDREE 204

Query: 303 HLTASTSTTLVDGGSIPMSYT 241
           H       T VDGG  P S T
Sbjct: 205 HSLHQLVLTAVDGGDPPQSGT 225


>sp|Q9Y5G2|PCDGE_HUMAN Protocadherin gamma-B2 OS=Homo sapiens
           GN=PCDHGB2 PE=2 SV=1
          Length = 931

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
 Frame = -3

Query: 456 TKLGMNYPCE-------GP--ILFVHTSESRGSTLEEMETPL*SRKDPPMTLSHGYHEEP 304
           TK G  +P +       GP  +   H +++    L E +TP   RK P + L H    E 
Sbjct: 146 TKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPD-GRKYPELILKHSLDREE 204

Query: 303 HLTASTSTTLVDGGSIPMSYT 241
           H       T VDGG  P S T
Sbjct: 205 HSLHQLVLTAVDGGDPPQSGT 225


>sp|P58765|PSAB_PSINU Photosystem I P700 chlorophyll a apoprotein A2
           OS=Psilotum nudum GN=psaB PE=3 SV=1
          Length = 734

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +1

Query: 106 KLYTTFKVSETGNLTGMFSESNGNKLSSTGNSSCLGWMQDRLLIRGVAH 252
           +LY     S  G LT +F  ++GN        +   W+QD L +R +AH
Sbjct: 41  RLYQKIFASHFGQLTVIFLWTSGNLFHVAWQGNFEAWVQDPLHVRPIAH 89


>sp|Q49CB2|PSAB_CUSSA Photosystem I P700 chlorophyll a apoprotein A2
           OS=Cuscuta sandwichiana GN=psaB PE=3 SV=1
          Length = 734

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = +1

Query: 85  NNHIS*IKLYTTFKVSETGNLTGMFSESNGNKLSSTGNSSCLGWMQDRLLIRGVAH 252
           +N I+  +LY     S  G L  +F  ++GN        +   W+QD L +R +AH
Sbjct: 34  HNEITEERLYQNIFASHFGQLAIIFLWTSGNLFHVAWEGNFESWVQDPLHVRPIAH 89


>sp|Q48NL9|SELU_PSE14 tRNA 2-selenouridine synthase OS=Pseudomonas
           syringae pv. phaseolicola (strain 1448A / Race 6)
           GN=selU PE=3 SV=1
          Length = 366

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/43 (30%), Positives = 27/43 (62%)
 Frame = +1

Query: 181 LSSTGNSSCLGWMQDRLLIRGVAHGDGSSIHQRGRGRSSEVRF 309
           ++STG +  L  +++ L + G+A+  GSS  +R  G+ +++ F
Sbjct: 149 MTSTGKTEVLTQLRNSLDLEGIANHRGSSFGKRATGQPAQIDF 191


>sp|Q3J8R7|RL2_NITOC 50S ribosomal protein L2 OS=Nitrosococcus
           oceani (strain ATCC 19707 / NCIMB 11848) GN=rplB PE=3
           SV=1
          Length = 274

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 166 SNGNKLSSTGNSSCLGWMQDRLLIRGVAHGDGSSIHQRGRGRSS 297
           ++G+ L S G +  + W   R  +RGVA       H  G GR+S
Sbjct: 197 NDGHGLRSLGKAGAMRWRGKRPTVRGVAMNPVDHPHGGGEGRTS 240


>sp|Q32RS4|PSAB_STAPU Photosystem I P700 chlorophyll a apoprotein A2
           OS=Staurastrum punctulatum GN=psaB PE=3 SV=1
          Length = 734

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +1

Query: 106 KLYTTFKVSETGNLTGMFSESNGNKLSSTGNSSCLGWMQDRLLIRGVAH 252
           KLY     S  G L  +F  ++GN        +   W QD L IR +AH
Sbjct: 41  KLYQKIFASHFGQLAIIFLWTSGNLFHVAWQGNFEAWSQDPLHIRPIAH 89


>sp|A6MMC1|PSAB_CHLSC Photosystem I P700 chlorophyll a apoprotein A2
           OS=Chloranthus spicatus GN=psaB PE=3 SV=1
          Length = 734

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 106 KLYTTFKVSETGNLTGMFSESNGNKLSSTGNSSCLGWMQDRLLIRGVAH 252
           +LY     S  G L  +F  ++GN        +   W+QD L +R +AH
Sbjct: 41  RLYQNIFASHFGQLAIIFLWTSGNLFHVAWQGNFQSWVQDPLHVRPIAH 89


>sp|Q1ACL3|PSAB_CHAVU Photosystem I P700 chlorophyll a apoprotein A2
           OS=Chara vulgaris GN=psaB PE=3 SV=1
          Length = 734

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +1

Query: 106 KLYTTFKVSETGNLTGMFSESNGNKLSSTGNSSCLGWMQDRLLIRGVAH 252
           KLY     S  G L  +F  ++GN        +   W+QD L +R +AH
Sbjct: 41  KLYQKIFASHFGQLAVIFLWTSGNLFHVAWQGNFEQWVQDPLHVRPIAH 89


>sp|Q8M9V9|PSAB_CHAGL Photosystem I P700 chlorophyll a apoprotein A2
           OS=Chaetosphaeridium globosum GN=psaB PE=3 SV=1
          Length = 734

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = +1

Query: 106 KLYTTFKVSETGNLTGMFSESNGNKLSSTGNSSCLGWMQDRLLIRGVAH 252
           KLY     S  G L  +F  ++GN        +   W QD L +R +AH
Sbjct: 41  KLYQKIFASHFGQLAVIFLWTSGNLFHVAWQGNFEAWSQDPLHVRPIAH 89
tr_hit_id B7V4N1
Definition tr|B7V4N1|B7V4N1_PSEAE Putative uncharacterized protein OS=Pseudomonas aeruginosa LESB58
Align length 57
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917964|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_A01.
         (485 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7V4N1|B7V4N1_PSEAE Putative uncharacterized protein OS=Pseud...    35   1.4  
tr|B3G1P3|B3G1P3_PSEAE Putative uncharacterized protein OS=Pseud...    34   4.1  
tr|A9USS5|A9USS5_MONBE Predicted protein OS=Monosiga brevicollis...    33   7.0  
tr|Q3MIJ3|Q3MIJ3_HUMAN Protocadherin gamma subfamily B, 2 OS=Hom...    33   7.0  
tr|A6RU53|A6RU53_BOTFB Predicted protein OS=Botryotinia fuckelia...    33   7.0  
tr|B1IEP2|B1IEP2_CLOBK ABC transporter, permease protein OS=Clos...    33   9.1  
tr|A7GB99|A7GB99_CLOBL ABC transporter, permease protein OS=Clos...    33   9.1  
tr|B1Q6G6|B1Q6G6_CLOBO Efflux ABC transporter, permease protein ...    33   9.1  

>tr|B7V4N1|B7V4N1_PSEAE Putative uncharacterized protein
           OS=Pseudomonas aeruginosa LESB58 GN=PLES_13391 PE=4 SV=1
          Length = 234

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 21/57 (36%), Positives = 29/57 (50%)
 Frame = -3

Query: 327 SHGYHEEPHLTASTSTTLVDGGSIPMSYTPYEETILHPSQATTIPSTR*FIPVTLTE 157
           S GY E  HL    + TL+ G S+P+ Y       LH  +++ +PS    IP TL E
Sbjct: 58  SRGYTENFHLDRDLTETLISGYSVPLRYRVIRR--LHELESSQVPS----IPTTLPE 108


>tr|B3G1P3|B3G1P3_PSEAE Putative uncharacterized protein
           OS=Pseudomonas aeruginosa GN=PACL_0715 PE=4 SV=1
          Length = 220

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 20/57 (35%), Positives = 29/57 (50%)
 Frame = -3

Query: 327 SHGYHEEPHLTASTSTTLVDGGSIPMSYTPYEETILHPSQATTIPSTR*FIPVTLTE 157
           S GY E  HL    + TL+ G S+P+ Y       LH  +++ +PS    IP +L E
Sbjct: 44  SRGYTENFHLDRDLTETLISGYSVPLRYRVIRR--LHELESSQVPS----IPTSLPE 94


>tr|A9USS5|A9USS5_MONBE Predicted protein OS=Monosiga brevicollis
           GN=5888 PE=4 SV=1
          Length = 965

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 35/110 (31%), Positives = 45/110 (40%), Gaps = 9/110 (8%)
 Frame = -3

Query: 456 TKLGMNYPCEGPILFVHTSESRGS----TLEEMETPL*SRKDPPMTLSHGYHEEPHLTAS 289
           T L    P   P+    TS   GS    TL   E    S    P+T S G  E    T S
Sbjct: 386 TPLTTTSPTTTPVTVTTTSGDDGSGSTSTLTTAEPITTSTSVDPVTTSDGSGEPSSTTVS 445

Query: 288 TSTTLVDG-GSIPMSYTPYEETILH----PSQATTIPSTR*FIPVTLTEH 154
           ++TT  D   ++P S TP   T        S ATT+P++    P T T +
Sbjct: 446 STTTAEDSTTTLPTSPTPVTTTSASAPTTSSVATTLPTSS--APATTTSN 493


>tr|Q3MIJ3|Q3MIJ3_HUMAN Protocadherin gamma subfamily B, 2 OS=Homo
           sapiens GN=PCDHGB2 PE=2 SV=1
          Length = 811

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 9/81 (11%)
 Frame = -3

Query: 456 TKLGMNYPCE-------GP--ILFVHTSESRGSTLEEMETPL*SRKDPPMTLSHGYHEEP 304
           TK G  +P +       GP  +   H +++    L E +TP   RK P + L H    E 
Sbjct: 146 TKPGTTFPLDPALDSDVGPNSLQRYHLNDNEYFDLAEKQTPD-GRKYPELILKHSLDREE 204

Query: 303 HLTASTSTTLVDGGSIPMSYT 241
           H       T VDGG  P S T
Sbjct: 205 HSLHQLVLTAVDGGDPPQSGT 225


>tr|A6RU53|A6RU53_BOTFB Predicted protein OS=Botryotinia fuckeliana
           (strain B05.10) GN=BC1G_03626 PE=4 SV=1
          Length = 752

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
 Frame = -3

Query: 342 PPMTLSHGYHEEPHLTAS-------TSTTLVDGGSIPMSYTPYEETILHP 214
           PP + S   H+  H ++S       TSTT    GS P SYTP+    L P
Sbjct: 141 PPSSASSSSHQSSHQSSSHRRNMSSTSTTTTQFGSPPPSYTPFVTPSLSP 190


>tr|B1IEP2|B1IEP2_CLOBK ABC transporter, permease protein
           OS=Clostridium botulinum (strain Okra / Type B1)
           GN=CLD_0055 PE=4 SV=1
          Length = 600

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 14  GVCCA*DSKNTNICHGRTIYIAFSIIISVRLSFIQPLRFQKLETLQVCSVRV-TGINYLV 190
           GV     S N+N+   RT +  F ++  + +S  Q +RF KLE L  C   V  GI   +
Sbjct: 87  GVLMISSSINSNVAQ-RTKF--FGMMRCIGMSKQQIIRFVKLEALNWCKTAVPIGI---I 140

Query: 191 LGIVVAWDGC 220
           LGIVV W  C
Sbjct: 141 LGIVVTWGLC 150


>tr|A7GB99|A7GB99_CLOBL ABC transporter, permease protein
           OS=Clostridium botulinum (strain Langeland / NCTC 10281
           / Type F) GN=CLI_0783 PE=4 SV=1
          Length = 600

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 14  GVCCA*DSKNTNICHGRTIYIAFSIIISVRLSFIQPLRFQKLETLQVCSVRV-TGINYLV 190
           GV     S N+N+   RT +  F ++  + +S  Q +RF KLE L  C   V  GI   +
Sbjct: 87  GVLMISSSINSNVAQ-RTKF--FGMMRCIGMSKQQIIRFVKLEALNWCKTAVPIGI---I 140

Query: 191 LGIVVAWDGC 220
           LGIVV W  C
Sbjct: 141 LGIVVTWGLC 150


>tr|B1Q6G6|B1Q6G6_CLOBO Efflux ABC transporter, permease protein
           OS=Clostridium botulinum NCTC 2916 GN=CBN_0753 PE=4 SV=1
          Length = 600

 Score = 32.7 bits (73), Expect = 9.1
 Identities = 27/70 (38%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
 Frame = +2

Query: 14  GVCCA*DSKNTNICHGRTIYIAFSIIISVRLSFIQPLRFQKLETLQVCSVRV-TGINYLV 190
           GV     S N+N+   RT +  F ++  + +S  Q +RF KLE L  C   V  GI   +
Sbjct: 87  GVLMISSSINSNVAQ-RTKF--FGMMRCIGMSKQQIIRFVKLEALNWCKTAVPIGI---I 140

Query: 191 LGIVVAWDGC 220
           LGIVV W  C
Sbjct: 141 LGIVVTWGLC 150