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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917967
Clone id YMU001_000108_A05
Library
Length 329
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_A05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CCATCAGTGAGATACCACTCTAGAAGAACTAGAATTCTAACCTTGTGTCAAGAATTACGG
ACCAAGAGACAGTCCCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAGAGTAACG
GAGGCGCGCAAAGGTTTCCTCAGGCTGGACGGAAATCAGCCTACGAGTGCAAAGGCAGAA
GGGAGCTTGACTGCGAGACCTACCAGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCG
ACGGTTCCAAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGC
TGATCTTCCCCAAGAGTTCACATCGACGG
■■Homology search results ■■ -
sp_hit_id P70906
Definition sp|P70906|VLP18_BORHE Variable large protein 18 OS=Borrelia hermsii
Align length 40
Score (bit) 33.1
E-value 0.45
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917967|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_A05.
         (329 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P70906|VLP18_BORHE Variable large protein 18 OS=Borrelia herm...    33   0.45 
sp|Q4U0G1|CLAP1_XENLA CLIP-associating protein 1 OS=Xenopus laev...    31   2.2  
sp|A0PT76|LEXA_MYCUA LexA repressor OS=Mycobacterium ulcerans (s...    30   2.9  
sp|A0LUZ1|LEXA_ACIC1 LexA repressor OS=Acidothermus cellulolytic...    30   3.8  
sp|O69979|LEXA_STRCO LexA repressor OS=Streptomyces coelicolor G...    29   6.5  
sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1...    29   6.5  
sp|Q82KE0|LEXA_STRAW LexA repressor OS=Streptomyces avermitilis ...    29   8.4  

>sp|P70906|VLP18_BORHE Variable large protein 18 OS=Borrelia hermsii
           GN=vlp18 PE=3 SV=1
          Length = 360

 Score = 33.1 bits (74), Expect = 0.45
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +1

Query: 148 DGNQPTSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRAVA 267
           +G+Q   A A+G+ TA   ++ GTK  LS+   P   AVA
Sbjct: 250 EGDQALGAAADGTTTAMSFAKGGTKDNLSNANTPKAAAVA 289


>sp|Q4U0G1|CLAP1_XENLA CLIP-associating protein 1 OS=Xenopus laevis
           GN=clasp1 PE=2 SV=1
          Length = 1468

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 145 LDGNQPTSAKAEGSLTARPTSRAGTKVGLSDPTVPSGRA 261
           +DGN+P+SA +  S  A  T+R G  +G +    PS  A
Sbjct: 247 VDGNRPSSASSSASSKAPQTARRGVSLGTARRPGPSSAA 285


>sp|A0PT76|LEXA_MYCUA LexA repressor OS=Mycobacterium ulcerans
           (strain Agy99) GN=lexA PE=3 SV=1
          Length = 244

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
 Frame = +1

Query: 103 ASQRVTEARKGFLRLDGNQPTSAKAEG---SLTARPTSRAGTKVGLSDPT 243
           A Q  T  RKG+LR D N+P +    G   ++TA P +       L +PT
Sbjct: 74  AHQLRTLERKGYLRRDPNRPRAVDVRGADDTVTAAPVTDVAGSDALPEPT 123


>sp|A0LUZ1|LEXA_ACIC1 LexA repressor OS=Acidothermus cellulolyticus
           (strain ATCC 43068 / 11B) GN=lexA PE=3 SV=1
          Length = 275

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +1

Query: 103 ASQRVTEARKGFLRLDGNQPTSAKAEGSLTARPTSRAG 216
           A Q +   RKGFLR D N+P + +   + +A P + AG
Sbjct: 89  AHQLMVLQRKGFLRRDPNRPRAVEIRSAESAVPDASAG 126


>sp|O69979|LEXA_STRCO LexA repressor OS=Streptomyces coelicolor
           GN=lexA PE=3 SV=1
          Length = 234

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +1

Query: 103 ASQRVTEARKGFLRLDGNQPTSAKAEGS---LTARPTSRAGTKVGLSDPTVPSGRAVA 267
           A Q +   RKGFLR D ++P + +  GS    + +PT  AG       P V  GR  A
Sbjct: 68  AHQLMALERKGFLRRDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLV--GRIAA 123


>sp|Q15751|HERC1_HUMAN Probable E3 ubiquitin-protein ligase HERC1
            OS=Homo sapiens GN=HERC1 PE=1 SV=1
          Length = 4861

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 133  LCAPPLLFGRPTPHRNCLPGTVSWS 59
            LC PP+    P  H+NCLP   SW+
Sbjct: 3900 LCNPPV----PPHHQNCLPDPASWN 3920


>sp|Q82KE0|LEXA_STRAW LexA repressor OS=Streptomyces avermitilis
           GN=lexA PE=3 SV=2
          Length = 234

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
 Frame = +1

Query: 103 ASQRVTEARKGFLRLDGNQPTSAKAEG---SLTARPTSRAGTKVGLSDPTVPSGRAVA 267
           A Q +   RKGFLR D ++P + +  G   S + +PT  AG       P V  GR  A
Sbjct: 68  AHQLMALERKGFLRRDPHRPRAYEVRGSDQSSSVQPTDTAGKPAASYVPLV--GRIAA 123
tr_hit_id B1C1N3
Definition tr|B1C1N3|B1C1N3_9FIRM Putative uncharacterized protein OS=Clostridium spiroforme DSM 1552
Align length 87
Score (bit) 130.0
E-value 4.0e-29
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917967|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_A05.
         (329 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1C1N3|B1C1N3_9FIRM Putative uncharacterized protein OS=Clost...   130   4e-29
tr|A8R9P5|A8R9P5_9FIRM Putative uncharacterized protein OS=Eubac...   128   1e-28
tr|A0Q208|A0Q208_CLONN Putative uncharacterized protein OS=Clost...   126   5e-28
tr|A0PXN7|A0PXN7_CLONN Putative uncharacterized protein OS=Clost...   126   5e-28
tr|B1BEF3|B1BEF3_CLOBO Putative uncharacterized protein (Fragmen...   126   5e-28
tr|B1BEE0|B1BEE0_CLOBO Putative uncharacterized protein OS=Clost...   126   5e-28
tr|B1BE06|B1BE06_CLOBO Putative uncharacterized protein OS=Clost...   126   5e-28
tr|B1QFN6|B1QFN6_CLOBO Putative uncharacterized protein OS=Clost...   122   7e-27
tr|B1QFL7|B1QFL7_CLOBO Putative uncharacterized protein (Fragmen...   122   7e-27
tr|B1RTR7|B1RTR7_CLOPE Putative uncharacterized protein OS=Clost...   122   9e-27
tr|B1RKU9|B1RKU9_CLOPE Putative uncharacterized protein OS=Clost...   122   9e-27
tr|B1RCB4|B1RCB4_CLOPE Putative uncharacterized protein OS=Clost...   122   9e-27
tr|B1BTI8|B1BTI8_CLOPE Putative uncharacterized protein OS=Clost...   122   9e-27
tr|B1BLN6|B1BLN6_CLOPE Putative uncharacterized protein OS=Clost...   122   9e-27
tr|B1BEX7|B1BEX7_CLOPE Putative uncharacterized protein OS=Clost...   122   9e-27
tr|Q877Q8|Q877Q8_CLOTE Putative uncharacterized protein OS=Clost...   119   7e-26
tr|A7DZU9|A7DZU9_CLOSP Hypothetical CTC00065-like protein OS=Clo...   119   7e-26
tr|B0A9C5|B0A9C5_9CLOT Putative uncharacterized protein OS=Clost...   117   3e-25
tr|B0A7G5|B0A7G5_9CLOT Putative uncharacterized protein OS=Clost...   117   3e-25
tr|B5HM15|B5HM15_9ACTO Putative uncharacterized protein OS=Strep...   114   3e-24
tr|B5G7E4|B5G7E4_9ACTO Putative uncharacterized protein OS=Strep...   114   3e-24
tr|B4V362|B4V362_9ACTO Putative uncharacterized protein OS=Strep...   112   1e-23
tr|A9FW92|A9FW92_9RHOB Putative uncharacterized protein OS=Phaeo...   110   3e-23
tr|Q1MP74|Q1MP74_LAWIP Putative uncharacterized protein LI1149 O...   106   5e-22
tr|Q5ZY04|Q5ZY04_LEGPH Hypothetical CTC00065, TC0129 OS=Legionel...   104   2e-21
tr|Q3BKH9|Q3BKH9_9PROT Putative uncharacterized protein OS=Magne...   103   4e-21
tr|A5ZYV5|A5ZYV5_9FIRM Putative uncharacterized protein (Fragmen...   103   4e-21
tr|A6FJV3|A6FJV3_9RHOB Putative uncharacterized protein OS=Roseo...   100   3e-20
tr|A5ZQM3|A5ZQM3_9FIRM Putative uncharacterized protein OS=Rumin...    95   2e-18
tr|A5B6Y9|A5B6Y9_VITVI Photosystem I P700 chlorophyll A apoprote...    94   3e-18

>tr|B1C1N3|B1C1N3_9FIRM Putative uncharacterized protein
           OS=Clostridium spiroforme DSM 1552 GN=CLOSPI_01140 PE=4
           SV=1
          Length = 100

 Score =  130 bits (326), Expect = 4e-29
 Identities = 64/87 (73%), Positives = 69/87 (79%)
 Frame = -3

Query: 327 VDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLCTRRLISV 148
           VDVNSWGRSACYP  +FYPLSDG S  +RRITK DFRPCST  SRSQ PFCLCT RLIS+
Sbjct: 6   VDVNSWGRSACYPQGSFYPLSDGLSIQHRRITKPDFRPCSTCWSRSQTPFCLCTLRLISI 65

Query: 147 QPEETFARLRYSLGGLRPIETVYLGLS 67
           Q E  F RLRYSLGG RP +T +L LS
Sbjct: 66  QAEGIFGRLRYSLGGDRPSQTAHLTLS 92


>tr|A8R9P5|A8R9P5_9FIRM Putative uncharacterized protein
           OS=Eubacterium dolichum DSM 3991 GN=EUBDOL_00581 PE=4
           SV=1
          Length = 100

 Score =  128 bits (322), Expect = 1e-28
 Identities = 63/88 (71%), Positives = 68/88 (77%)
 Frame = -3

Query: 327 VDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLCTRRLISV 148
           VDVNSW RSACYP  +FYPLSDGPS  +RRIT  DFRPCST  S SQA FC+CTRRLIS+
Sbjct: 6   VDVNSWARSACYPQGSFYPLSDGPSIRHRRITNPDFRPCSTCLSHSQARFCICTRRLISI 65

Query: 147 QPEETFARLRYSLGGLRPIETVYLGLSL 64
           Q E TF RLRYSLGG RP +T  L  SL
Sbjct: 66  QSERTFGRLRYSLGGDRPSQTACLTRSL 93


>tr|A0Q208|A0Q208_CLONN Putative uncharacterized protein
           OS=Clostridium novyi (strain NT) GN=NT01CX_0152 PE=4
           SV=1
          Length = 213

 Score =  126 bits (317), Expect = 5e-28
 Identities = 61/87 (70%), Positives = 67/87 (77%)
 Frame = -3

Query: 327 VDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLCTRRLISV 148
           VDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAPFCLCT R IS 
Sbjct: 13  VDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAPFCLCTLRAISD 72

Query: 147 QPEETFARLRYSLGGLRPIETVYLGLS 67
           + E TF RLRY LGG RP +T +L +S
Sbjct: 73  RAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|A0PXN7|A0PXN7_CLONN Putative uncharacterized protein
           OS=Clostridium novyi (strain NT) GN=NT01CX_0251 PE=4
           SV=1
          Length = 213

 Score =  126 bits (317), Expect = 5e-28
 Identities = 61/87 (70%), Positives = 67/87 (77%)
 Frame = -3

Query: 327 VDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLCTRRLISV 148
           VDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAPFCLCT R IS 
Sbjct: 13  VDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAPFCLCTLRAISD 72

Query: 147 QPEETFARLRYSLGGLRPIETVYLGLS 67
           + E TF RLRY LGG RP +T +L +S
Sbjct: 73  RAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BEF3|B1BEF3_CLOBO Putative uncharacterized protein (Fragment)
           OS=Clostridium botulinum C str. Eklund GN=CBC_A1887 PE=4
           SV=1
          Length = 107

 Score =  126 bits (317), Expect = 5e-28
 Identities = 61/87 (70%), Positives = 67/87 (77%)
 Frame = -3

Query: 327 VDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLCTRRLISV 148
           VDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAPFCLCT R IS 
Sbjct: 13  VDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAPFCLCTLRAISD 72

Query: 147 QPEETFARLRYSLGGLRPIETVYLGLS 67
           + E TF RLRY LGG RP +T +L +S
Sbjct: 73  RAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BEE0|B1BEE0_CLOBO Putative uncharacterized protein
           OS=Clostridium botulinum C str. Eklund GN=CBC_A1890 PE=4
           SV=1
          Length = 210

 Score =  126 bits (317), Expect = 5e-28
 Identities = 61/87 (70%), Positives = 67/87 (77%)
 Frame = -3

Query: 327 VDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLCTRRLISV 148
           VDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAPFCLCT R IS 
Sbjct: 13  VDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAPFCLCTLRAISD 72

Query: 147 QPEETFARLRYSLGGLRPIETVYLGLS 67
           + E TF RLRY LGG RP +T +L +S
Sbjct: 73  RAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1BE06|B1BE06_CLOBO Putative uncharacterized protein
           OS=Clostridium botulinum C str. Eklund GN=CBC_0392 PE=4
           SV=1
          Length = 213

 Score =  126 bits (317), Expect = 5e-28
 Identities = 61/87 (70%), Positives = 67/87 (77%)
 Frame = -3

Query: 327 VDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLCTRRLISV 148
           VDV+SWGRSACYP  +FYPLSDGPS  N RITK DFRPCST   RSQAPFCLCT R IS 
Sbjct: 13  VDVDSWGRSACYPRGSFYPLSDGPSIQNHRITKPDFRPCSTCMCRSQAPFCLCTLRAISD 72

Query: 147 QPEETFARLRYSLGGLRPIETVYLGLS 67
           + E TF RLRY LGG RP +T +L +S
Sbjct: 73  RAEGTFGRLRYLLGGDRPSQTAHLAMS 99


>tr|B1QFN6|B1QFN6_CLOBO Putative uncharacterized protein
           OS=Clostridium botulinum NCTC 2916 GN=CBN_0042 PE=4 SV=1
          Length = 218

 Score =  122 bits (307), Expect = 7e-27
 Identities = 60/87 (68%), Positives = 66/87 (75%)
 Frame = -3

Query: 327 VDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLCTRRLISV 148
           VDV+SWGRSACYP  +FYPLSDGP T   RITK DFRPCST   RSQAPFCLCT R IS 
Sbjct: 13  VDVDSWGRSACYPRGSFYPLSDGPPTRYHRITKPDFRPCSTCMCRSQAPFCLCTLRAISD 72

Query: 147 QPEETFARLRYSLGGLRPIETVYLGLS 67
           + E TF RLRY LGG RP +T +L +S
Sbjct: 73  RAEGTFGRLRYFLGGDRPSQTAHLTMS 99


>tr|B1QFL7|B1QFL7_CLOBO Putative uncharacterized protein (Fragment)
           OS=Clostridium botulinum NCTC 2916 GN=CBN_0002 PE=4 SV=1
          Length = 184

 Score =  122 bits (307), Expect = 7e-27
 Identities = 60/87 (68%), Positives = 66/87 (75%)
 Frame = -3

Query: 327 VDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLCTRRLISV 148
           VDV+SWGRSACYP  +FYPLSDGP T   RITK DFRPCST   RSQAPFCLCT R IS 
Sbjct: 13  VDVDSWGRSACYPRGSFYPLSDGPPTRYHRITKPDFRPCSTCMCRSQAPFCLCTLRAISD 72

Query: 147 QPEETFARLRYSLGGLRPIETVYLGLS 67
           + E TF RLRY LGG RP +T +L +S
Sbjct: 73  RAEGTFGRLRYFLGGDRPSQTAHLTMS 99


>tr|B1RTR7|B1RTR7_CLOPE Putative uncharacterized protein
           OS=Clostridium perfringens NCTC 8239 GN=AC7_A0024 PE=4
           SV=1
          Length = 218

 Score =  122 bits (306), Expect = 9e-27
 Identities = 60/87 (68%), Positives = 66/87 (75%)
 Frame = -3

Query: 327 VDVNSWGRSACYP*SNFYPLSDGPSTWNRRITKADFRPCSTGRSRSQAPFCLCTRRLISV 148
           VDV+SWGRSACYP  +FYPLSDGP T   RITK DFRPCST   RSQAPFCLCT R IS 
Sbjct: 13  VDVDSWGRSACYPRGSFYPLSDGPPTRYHRITKPDFRPCSTCGCRSQAPFCLCTLRTISD 72

Query: 147 QPEETFARLRYSLGGLRPIETVYLGLS 67
           + E TF RLRY LGG RP +T +L +S
Sbjct: 73  RSEGTFGRLRYFLGGDRPSQTAHLTMS 99