BP917972 |
Clone id |
YMU001_000108_A10 |
Library |
YMU01 |
Length |
540 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000108_A10. |
Accession |
BP917972 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL889Contig1 |
Sequence |
GGCAGCTTCTGCGAAGCCTCTGCTTCTGCTCGCCCTGCTCAGCGTATCAGCCTACACTAC CATTGCCGATAATTGCGTCTACACATTCTTCATCAAAACTGGAACAAGGATCAGTGGCGG CACAAATTCGGTGATTAGCGCGACCCTCTTCGACTCTACCGGCGACAGCGTGCAGATCAG CGACATTGAAACATGGGGAGGATTGATGGGCACAGACTACGACTACTTTGAGTGAGGCAA TGTTGACATATTTAGCGGGCTCGGAACGTGCACAAGTGCAGGCACCATATGTGCTCTCAA TTTGACAAGTGATGGGTCTGGCTCACATCCTGGCTGGTATGTGAATTATGCAGAGGTCAC CATCACAGGGGCTAACCTTGGATGCACCAATGTGGACTTTGAGATTGAGCAGTGGATTGC CGATGATGCTTACCCTTACGAGCTCTATGCATACCGGGACTCCTGCTCCTCCTCCTCCTC AGCTGTTCGCTCACATGGCAAACGCACCTCTGTCTTGGATGCATAGGAGTAGCTTCAAGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q8IVV2 |
Definition |
sp|Q8IVV2|LOXH1_HUMAN Lipoxygenase homology domain-containing protein 1 OS=Homo sapiens |
Align length |
93 |
Score (bit) |
46.6 |
E-value |
8.0e-05 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917972|Adiantum capillus-veneris mRNA, clone: YMU001_000108_A10. (540 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q8IVV2|LOXH1_HUMAN Lipoxygenase homology domain-containing pr... 47 8e-05 sp|Q7TN88|PK1L2_MOUSE Polycystic kidney disease protein 1-like 2... 46 1e-04 sp|Q7Z443|PK1L3_HUMAN Polycystic kidney disease protein 1-like 3... 44 7e-04 sp|Q7Z442|PK1L2_HUMAN Polycystic kidney disease protein 1-like 2... 40 0.007 sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3... 39 0.016 sp|O16025|AOSL_PLEHO Allene oxide synthase-lipoxygenase protein ... 33 0.89 sp|Q07DW4|CTTB2_MUNRE Cortactin-binding protein 2 OS=Muntiacus r... 32 2.0 sp|Q09YJ3|CTTB2_MUNMU Cortactin-binding protein 2 OS=Muntiacus m... 32 2.0 sp|P04813|CTR2_CANFA Chymotrypsinogen 2 OS=Canis familiaris GN=C... 31 3.4 sp|P00767|CTRB_BOVIN Chymotrypsinogen B OS=Bos taurus PE=1 SV=1 31 4.4 sp|Q9Z2P5|RIPK3_RAT Receptor-interacting serine/threonine-protei... 30 5.7 sp|Q877T5|EFTU_VIBPA Elongation factor Tu OS=Vibrio parahaemolyt... 30 5.7 sp|Q01SX2|EFTU_SOLUE Elongation factor Tu OS=Solibacter usitatus... 30 5.7 sp|P86174|BEND4_MOUSE BEN domain-containing protein 4 OS=Mus mus... 30 5.7 sp|P01266|THYG_HUMAN Thyroglobulin OS=Homo sapiens GN=TG PE=1 SV=5 30 7.5 sp|Q99590|SFRIP_HUMAN SFRS2-interacting protein OS=Homo sapiens ... 30 7.5 sp|Q6Y5M6|PMIP_COPDI Mitochondrial intermediate peptidase OS=Cop... 30 7.5 sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate ... 30 7.5 sp|Q12QX0|LIPB_SHEDO Octanoyltransferase OS=Shewanella denitrifi... 30 7.5 sp|Q09YI1|CTTB2_SHEEP Cortactin-binding protein 2 OS=Ovis aries ... 30 7.5 sp|Q9Y679|AUP1_HUMAN Ancient ubiquitous protein 1 OS=Homo sapien... 30 7.6 sp|Q8DCQ7|EFTU_VIBVU Elongation factor Tu OS=Vibrio vulnificus G... 30 9.8 sp|Q8DD27|EFTUL_VIBVU Putative elongation factor Tu-like protein... 30 9.8 sp|Q7MGR1|EFTU2_VIBVY Elongation factor Tu 2 OS=Vibrio vulnificu... 30 9.8 sp|O02380|ALL2_TYRPU Mite group 2 allergen Tyr p 2 OS=Tyrophagus... 30 9.8 sp|P27816|MAP4_HUMAN Microtubule-associated protein 4 OS=Homo sa... 30 9.9
>sp|Q8IVV2|LOXH1_HUMAN Lipoxygenase homology domain-containing protein 1 OS=Homo sapiens GN=LOXHD1 PE=1 SV=2 Length = 1947
Score = 46.6 bits (109), Expect = 8e-05 Identities = 26/93 (27%), Positives = 46/93 (49%) Frame = +2
Query: 80 YTFFIKTGTRISGGTNSVISATLFDSTGDSVQISDIETWGGLMGTDYDYFE*GNVDIFSG 259 YT +KT + GT++ + +F GDS ++ ++ +++ FE N D F+ Sbjct: 1609 YTVAVKTSDILGAGTDANVFIIIFGENGDSGTLALKQS------ANWNKFERNNTDTFN- 1661
Query: 260 LGTCTSAGTICALNLTSDGSGSHPGWYVNYAEV 358 S G +C L + D G PGW+++Y +V Sbjct: 1662 FPDMLSLGHLCKLRVWHDNKGIFPGWHLSYVDV 1694
Score = 43.1 bits (100), Expect = 9e-04 Identities = 33/117 (28%), Positives = 56/117 (47%), Gaps = 3/117 (2%) Frame = +2
Query: 80 YTFFIKTGTRISGGTNSVISATLF---DSTGDSVQISDIETWGGLMGTDYDYFE*GNVDI 250 ++ IKTG + + GT++ + TLF D TG ++ S T+ D FE +++I Sbjct: 899 FSVTIKTGVKKNAGTDANVFITLFGTQDDTGMTLLKSS--------KTNSDKFERDSIEI 950
Query: 251 FSGLGTCTSAGTICALNLTSDGSGSHPGWYVNYAEVTITGANLGCTNVDFEIEQWIA 421 F+ G + + L +D +G PGW+V++ EV T F +W+A Sbjct: 951 FT--VETLDLGDLWKVRLGNDNTGKAPGWFVDWVEVDAPSLGKCMT---FPCGRWLA 1002
Score = 37.4 bits (85), Expect = 0.047 Identities = 35/130 (26%), Positives = 55/130 (42%), Gaps = 4/130 (3%) Frame = +2
Query: 71 NCVYTFFIKTGTRISGGTNSVISATLFDSTGDSVQISDIETWGGLMGTDYDYFE*GNVDI 250 N Y +KTG T+S + L+ D+++ + + L DYFE G VD Sbjct: 405 NFRYHISLKTGDVSGASTDSRVYIKLYGDKSDTIKQVLLVSDNNLK----DYFERGRVDE 460
Query: 251 FSGLGTCTSAGTICALNLTSDGSGSHPGWYVNYAEVTITGANLGCTNVDFEIEQWI---- 418 F+ L T + G I L + D +G H W++ ++ + T F +W+ Sbjct: 461 FT-LETL-NIGNINRLVIGHDSTGMHVSWFLGSVQIRVPRQGKQYT---FPANRWLDKNQ 515
Query: 419 ADDAYPYELY 448 AD ELY Sbjct: 516 ADGRLEVELY 525
Score = 31.6 bits (70), Expect = 2.6 Identities = 26/97 (26%), Positives = 39/97 (40%) Frame = +2
Query: 68 DNCVYTFFIKTGTRISGGTNSVISATLFDSTGDSVQISDIETWGGLMGTDYDYFE*GNVD 247 D +Y+ I TG GT++ + T++ GD+ E + G + FE G D Sbjct: 1180 DIVLYSVQIFTGNIPGAGTDAKVYITIYGDLGDTG-----ERYLGKSENRTNKFERGTAD 1234
Query: 248 IFSGLGTCTSAGTICALNLTSDGSGSHPGWYVNYAEV 358 F + G I + L D S WYV E+ Sbjct: 1235 TF--IIEAADLGVIYKIKLRHDNSKWCADWYVEKVEI 1269
>sp|Q7TN88|PK1L2_MOUSE Polycystic kidney disease protein 1-like 2 OS=Mus musculus GN=Pkd1l2 PE=2 SV=1 Length = 2461
Score = 45.8 bits (107), Expect = 1e-04 Identities = 31/89 (34%), Positives = 41/89 (46%) Frame = +2
Query: 80 YTFFIKTGTRISGGTNSVISATLFDSTGDSVQISDIETWGGLMGTDYDYFE*GNVDIFSG 259 Y + TG R T+S ++ TL+ S G+S L D FE G VD+F Sbjct: 1393 YLVTVYTGHRRGAATSSKVTLTLYGSDGESEPHH-------LSDPDAAVFERGGVDVFL- 1444
Query: 260 LGTCTSAGTICALNLTSDGSGSHPGWYVN 346 L T G + +L L D SG P WYV+ Sbjct: 1445 LSTLFPLGELQSLRLWHDNSGDRPSWYVS 1473
>sp|Q7Z443|PK1L3_HUMAN Polycystic kidney disease protein 1-like 3 OS=Homo sapiens GN=PKD1L3 PE=2 SV=1 Length = 1732
Score = 43.5 bits (101), Expect = 7e-04 Identities = 35/102 (34%), Positives = 45/102 (44%), Gaps = 5/102 (4%) Frame = +2
Query: 56 TTIADNCV-----YTFFIKTGTRISGGTNSVISATLFDSTGDSVQISDIETWGGLMGTDY 220 T +ADN Y + TG R S T + + TL+ S G S L Sbjct: 732 TVLADNDPSAQFHYLIQVYTGYRRSAATTAKVVITLYGSEGRSEPHH-------LCDPQK 784
Query: 221 DYFE*GNVDIFSGLGTCTSAGTICALNLTSDGSGSHPGWYVN 346 FE G +D+F L T TS G + +L L D SG P WYV+ Sbjct: 785 TVFERGGLDVFL-LTTWTSLGNLHSLRLWHDNSGVSPSWYVS 825
>sp|Q7Z442|PK1L2_HUMAN Polycystic kidney disease protein 1-like 2 OS=Homo sapiens GN=PKD1L2 PE=1 SV=3 Length = 2459
Score = 40.0 bits (92), Expect = 0.007 Identities = 29/89 (32%), Positives = 38/89 (42%) Frame = +2
Query: 80 YTFFIKTGTRISGGTNSVISATLFDSTGDSVQISDIETWGGLMGTDYDYFE*GNVDIFSG 259 Y + TG R T+S ++ TL+ G+ L D FE G VD F Sbjct: 1392 YLVTVYTGHRRGAATSSKVTVTLYGLDGEREPHH-------LADPDTPVFERGAVDAFL- 1443
Query: 260 LGTCTSAGTICALNLTSDGSGSHPGWYVN 346 L T G + +L L D SG P WYV+ Sbjct: 1444 LSTLFPLGELRSLRLWHDNSGDRPSWYVS 1472
>sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3 OS=Mus musculus GN=Pkd1l3 PE=2 SV=1 Length = 2201
Score = 38.9 bits (89), Expect = 0.016 Identities = 33/107 (30%), Positives = 45/107 (42%), Gaps = 5/107 (4%) Frame = +2
Query: 56 TTIADN-----CVYTFFIKTGTRISGGTNSVISATLFDSTGDSVQISDIETWGGLMGTDY 220 T +ADN Y + TG R T + + TL+ S G S L + Sbjct: 1118 TVLADNDPSSASHYLIQVYTGYRRRAATTAKVVITLYGSEGHSEPHH-------LCDPEK 1170
Query: 221 DYFE*GNVDIFSGLGTCTSAGTICALNLTSDGSGSHPGWYVNYAEVT 361 FE G +D+F L T + G + L L D SG P WYV+ V+ Sbjct: 1171 TVFERGALDVFL-LSTGSWLGDLHGLRLWHDNSGDSPSWYVSQVIVS 1216
>sp|O16025|AOSL_PLEHO Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla PE=1 SV=1 Length = 1066
Score = 33.1 bits (74), Expect = 0.89 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 3/95 (3%) Frame = +2
Query: 71 NCVYTFFIKTGTRISGGTNSVISATLFDSTGDSVQISDIETWGGLMGTDYDYFE*GNVDI 250 N +Y ++TG R GT++ I+ + + G + + ++ W ++ FE G+ + Sbjct: 373 NAIYNVEVETGDREHAGTDATITIRITGAKGRTDYLK-LDKW------FHNDFEAGSKEQ 425
Query: 251 FSGLGTCTSAGTICALNLTSDGSG---SHPGWYVN 346 ++ G G I + L SDG G P W+VN Sbjct: 426 YTVQG--FDVGDIQLIELHSDGGGYWSGDPDWFVN 458
>sp|Q07DW4|CTTB2_MUNRE Cortactin-binding protein 2 OS=Muntiacus reevesi GN=CTTNBP2 PE=3 SV=1 Length = 1642
Score = 32.0 bits (71), Expect = 2.0 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = +3
Query: 345 IMQRSPSQGLTLDAPMWTLRLSSGLPMMLTLT-SSMHTGTPAPPPPQLFAHMANAPL 512 I + PS G T D SS P+ T++ +S HT PAPPP L + ANAPL Sbjct: 381 IEENGPSTGSTADLT------SSPTPVPSTVSPASGHT--PAPPPHSLHSPCANAPL 429
>sp|Q09YJ3|CTTB2_MUNMU Cortactin-binding protein 2 OS=Muntiacus muntjak GN=CTTNBP2 PE=3 SV=1 Length = 1642
Score = 32.0 bits (71), Expect = 2.0 Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 1/57 (1%) Frame = +3
Query: 345 IMQRSPSQGLTLDAPMWTLRLSSGLPMMLTLT-SSMHTGTPAPPPPQLFAHMANAPL 512 I + PS G T D SS P+ T++ +S HT PAPPP L + ANAPL Sbjct: 381 IEENGPSTGSTADLT------SSPTPVPSTVSPASGHT--PAPPPHSLHSPCANAPL 429
>sp|P04813|CTR2_CANFA Chymotrypsinogen 2 OS=Canis familiaris GN=CTRB1 PE=2 SV=1 Length = 263
Score = 31.2 bits (69), Expect = 3.4 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 8/72 (11%) Frame = -3
Query: 421 GNPLLNLKVHIGASKVSPCDGDLCIIHIPARM*ARPITCQIES--------TYGACTCAR 266 G+ + +L V GAS VS C GD P+ CQ + ++G+ TC+ Sbjct: 191 GSKITDLMVCAGASGVSSCMGDS----------GGPLVCQKDGAWTLVGIVSWGSGTCST 240
Query: 265 SEPAKYVNIASL 230 S P Y + L Sbjct: 241 STPGVYARVTKL 252
>sp|P00767|CTRB_BOVIN Chymotrypsinogen B OS=Bos taurus PE=1 SV=1 Length = 245
Score = 30.8 bits (68), Expect = 4.4 Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 8/72 (11%) Frame = -3
Query: 421 GNPLLNLKVHIGASKVSPCDGDLCIIHIPARM*ARPITCQIES--------TYGACTCAR 266 G+ + ++ + GAS VS C GD P+ CQ ++G+ TC+ Sbjct: 173 GSRVTDVMICAGASGVSSCMGDS----------GGPLVCQKNGAWTLAGIVSWGSSTCST 222
Query: 265 SEPAKYVNIASL 230 S PA Y + +L Sbjct: 223 STPAVYARVTAL 234
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B7FGR1 |
Definition |
tr|B7FGR1|B7FGR1_MEDTR Putative uncharacterized protein OS=Medicago truncatula |
Align length |
135 |
Score (bit) |
167.0 |
E-value |
3.0e-40 |
Report |
|