BP917978
Clone id YMU001_000108_B05
Library
Length 476
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_B05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
ACAAAAGGAGGCTGAACCCGCTTCCTGGGCTTCGTTTGAGCTACTTCTGAAAGATAGGTT
TTCAGGCAACTTCTTAGTTGCAAACTGGTCAAAAAAACTTTCAGAGATGTGAAATCAATA
GACTGATTATGGGTAGGAAATATGAATTGCCCCCCTCTCACACAATCAAGGATGACAAGA
GCGGGGTAAGGTAGAGCAGGTTCAACCATATCCTTCCATTGGTTTTCCCCATCTGCAAAG
TAGAACGAGAAGGTGCTCTCATGTTTTGTTGGGGAAAGCCCTTCTTCTTTGCCTCTGTCG
CCGGATTTGGCAGCTTTCAACCCCACAAATGATCTGCCAACTCTGGAGGAGAGTACAGAT
GTCAAGCCTTCTGGCATGGATGATATAGAGTCAGCATCAATTTCTCCAACTATCTTCTCT
TCTTGTATTTTATAAACAGCGTTGTCTTCTGACAATAAAAGCTTACTGAGTTCTAG
■■Homology search results ■■ -
sp_hit_id Q89XV1
Definition sp|Q89XV1|SECA_BRAJA Protein translocase subunit secA OS=Bradyrhizobium japonicum
Align length 70
Score (bit) 32.0
E-value 1.5
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917978|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_B05.
(476 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q89XV1|SECA_BRAJA Protein translocase subunit secA OS=Bradyrh... 32 1.5
sp|P0C1A7|PELL_DICD3 Pectate lyase L OS=Dickeya dadantii (strain... 31 3.2
sp|Q9DIC6|VGLG_LNYV Glycoprotein G OS=Lettuce necrotic yellows v... 29 9.4
sp|A6VMF8|MEND_ACTSZ 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cycloh... 29 9.4

>sp|Q89XV1|SECA_BRAJA Protein translocase subunit secA
OS=Bradyrhizobium japonicum GN=secA PE=3 SV=1
Length = 946

Score = 32.0 bits (71), Expect = 1.5
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
Frame = -1

Query: 470 LSKLLLSEDNAVYKIQEEK---IVGEIDADSISSMP--EGLTSVLSSRVGRSFVGLKAAK 306
LS L ED+ VY+ Q+EK I+ EI+ + P G S+ S V F+ K
Sbjct: 403 LSVARLDEDDEVYRTQKEKYAAILAEIERANARLQPVLVGTASIEKSEVLAEFLKSNGYK 462

Query: 305 SGDRGKEEGL 276
D GKE L
Sbjct: 463 QIDFGKENAL 472


>sp|P0C1A7|PELL_DICD3 Pectate lyase L OS=Dickeya dadantii (strain
3937) GN=pelL PE=2 SV=1
Length = 425

Score = 30.8 bits (68), Expect = 3.2
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = -1

Query: 398 DADSISSMPEGLTSVLSSRVGRSFVGLKAAKSGDRGKEEGLSPTKHESTFSFYFADGENQ 219
D SM +G G FVG +A ++ D G + SP K S+ F +G N
Sbjct: 200 DPKKNGSMADGFGPKQKQGPGNRFVGCRAWENSDDGFDLFDSPQKVVIENSWAFRNGINY 259

Query: 218 WKD 210
W D
Sbjct: 260 WND 262


>sp|Q9DIC6|VGLG_LNYV Glycoprotein G OS=Lettuce necrotic yellows
virus GN=G PE=3 SV=1
Length = 551

Score = 29.3 bits (64), Expect = 9.4
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = -1

Query: 383 SSMPEGLTSVLSSRVGRSFVGLKAAKSGDRGKEEGLSPTKHESTFSFYFADGENQ 219
S +PE + V + ++ + + SG EE L T +S FSF DG+ Q
Sbjct: 137 SELPEEYHYASDTEVVQDYLEILSMPSGLDYMEENLRITPSQSKFSFQLTDGKGQ 191


>sp|A6VMF8|MEND_ACTSZ
2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-
carboxylate synthase OS=Actinobacillus succinogenes
(strain ATCC 55618 / 130Z) GN=menD PE=3 SV=1
Length = 568

Score = 29.3 bits (64), Expect = 9.4
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3

Query: 195 STLPRSCHP*LCERGAIHISYP 130
STL ++CH L E+G +HI+ P
Sbjct: 153 STLDQACHSQLVEKGVVHINVP 174


tr_hit_id Q8W363
Definition tr|Q8W363|Q8W363_ORYSA Putative uncharacterized protein OSJNBa0029C15.25 OS=Oryza sativa
Align length 159
Score (bit) 38.5
E-value 0.17
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917978|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_B05.
(476 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q8W363|Q8W363_ORYSA Putative uncharacterized protein OSJNBa00... 39 0.17
tr|Q7XDA0|Q7XDA0_ORYSJ Uncharacterized ACR, COG1678 family prote... 39 0.17
tr|Q0IWV7|Q0IWV7_ORYSJ Os10g0485100 protein (Fragment) OS=Oryza ... 39 0.17
tr|A7PNF6|A7PNF6_VITVI Chromosome chr1 scaffold_22, whole genome... 39 0.17
tr|A2Z8P2|A2Z8P2_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.17
tr|B2KE73|B2KE73_ELUMP Phosphoglucomutase/phosphomannomutase alp... 35 1.9
tr|Q73TD8|Q73TD8_MYCPA Putative uncharacterized protein OS=Mycob... 34 3.2
tr|B3P5X4|B3P5X4_DROER GG12094 OS=Drosophila erecta GN=GG12094 P... 34 4.2
tr|Q7V6R0|Q7V6R0_PROMM Similar to UvrD/REP helicase OS=Prochloro... 33 7.1
tr|A2C8A3|A2C8A3_PROM3 Possible UvrD/REP helicase subunit B OS=P... 33 7.1
tr|B1GYF9|B1GYF9_9DELT Polyketide synthase OS=Chondromyces croca... 33 7.1
tr|B7BWB3|B7BWB3_9FIRM Putative uncharacterized protein OS=Roseb... 33 9.2

>tr|Q8W363|Q8W363_ORYSA Putative uncharacterized protein
OSJNBa0029C15.25 OS=Oryza sativa GN=OSJNBa0029C15.25 PE=4
SV=1
Length = 1252

Score = 38.5 bits (88), Expect = 0.17
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 9/159 (5%)
Frame = -1

Query: 452 SEDNAVYKI---QEEKIVGEIDADSISSMPEGLTSVLSSRVGRSFVGLKAAKSGDRG--- 291
++ +AV+ + + +I I D++ + EG S + + ++ GD
Sbjct: 720 NQQDAVFSVLGQESRRIEDAIYEDNLFILDEGSEESDSKYPVHAALSSSSSLVGDNTYYT 779

Query: 290 -KEEGLSPTKHESTFSFYFADGENQWKDMVEPALPYPALVILDCVRGGQFIFPTHNQSID 114
+E P +H + S +F+DG + + P+LVI+D ++ ++FP I+
Sbjct: 780 EQETPSIPDEHFAG-SLFFSDGGYRLLQTLTGGSRMPSLVIIDPIQQKHYVFP---DEIE 835

Query: 113 FT--SLKVFLTSLQLRSCLKTYLSEVAQTKPRKRVQPPF 3
FT SL FL RS Y S ++ ++ ++PPF
Sbjct: 836 FTYPSLANFLDHFMNRSLSPYYRSALSVISSKELLRPPF 874


>tr|Q7XDA0|Q7XDA0_ORYSJ Uncharacterized ACR, COG1678 family protein,
expressed (Putative uncharacterized protein) OS=Oryza
sativa subsp. japonica GN=LOC_Os10g34390 PE=4 SV=1
Length = 1252

Score = 38.5 bits (88), Expect = 0.17
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 9/159 (5%)
Frame = -1

Query: 452 SEDNAVYKI---QEEKIVGEIDADSISSMPEGLTSVLSSRVGRSFVGLKAAKSGDRG--- 291
++ +AV+ + + +I I D++ + EG S + + ++ GD
Sbjct: 720 NQQDAVFSVLGQESRRIEDAIYEDNLFILDEGSEESDSKYPVHAALSSSSSLVGDNTYYT 779

Query: 290 -KEEGLSPTKHESTFSFYFADGENQWKDMVEPALPYPALVILDCVRGGQFIFPTHNQSID 114
+E P +H + S +F+DG + + P+LVI+D ++ ++FP I+
Sbjct: 780 EQETPSIPDEHFAG-SLFFSDGGYRLLQTLTGGSRMPSLVIIDPIQQKHYVFP---DEIE 835

Query: 113 FT--SLKVFLTSLQLRSCLKTYLSEVAQTKPRKRVQPPF 3
FT SL FL RS Y S ++ ++ ++PPF
Sbjct: 836 FTYPSLANFLDHFMNRSLSPYYRSALSVISSKELLRPPF 874


>tr|Q0IWV7|Q0IWV7_ORYSJ Os10g0485100 protein (Fragment) OS=Oryza
sativa subsp. japonica GN=Os10g0485100 PE=4 SV=1
Length = 855

Score = 38.5 bits (88), Expect = 0.17
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 9/159 (5%)
Frame = -1

Query: 452 SEDNAVYKI---QEEKIVGEIDADSISSMPEGLTSVLSSRVGRSFVGLKAAKSGDRG--- 291
++ +AV+ + + +I I D++ + EG S + + ++ GD
Sbjct: 323 NQQDAVFSVLGQESRRIEDAIYEDNLFILDEGSEESDSKYPVHAALSSSSSLVGDNTYYT 382

Query: 290 -KEEGLSPTKHESTFSFYFADGENQWKDMVEPALPYPALVILDCVRGGQFIFPTHNQSID 114
+E P +H + S +F+DG + + P+LVI+D ++ ++FP I+
Sbjct: 383 EQETPSIPDEHFAG-SLFFSDGGYRLLQTLTGGSRMPSLVIIDPIQQKHYVFP---DEIE 438

Query: 113 FT--SLKVFLTSLQLRSCLKTYLSEVAQTKPRKRVQPPF 3
FT SL FL RS Y S ++ ++ ++PPF
Sbjct: 439 FTYPSLANFLDHFMNRSLSPYYRSALSVISSKELLRPPF 477


>tr|A7PNF6|A7PNF6_VITVI Chromosome chr1 scaffold_22, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00021229001
PE=4 SV=1
Length = 1106

Score = 38.5 bits (88), Expect = 0.17
Identities = 24/82 (29%), Positives = 38/82 (46%)
Frame = -1

Query: 248 SFYFADGENQWKDMVEPALPYPALVILDCVRGGQFIFPTHNQSIDFTSLKVFLTSLQLRS 69
SF+F+DG + + P+ VI+D + ++FP N ++SL FL S
Sbjct: 631 SFFFSDGGYRLLRALTSGSKIPSAVIIDPILQQHYVFP-ENTVFSYSSLATFLDGFCNGS 689

Query: 68 CLKTYLSEVAQTKPRKRVQPPF 3
L S+ PR+ +PPF
Sbjct: 690 LLPYQHSDSVVLSPREAPRPPF 711


>tr|A2Z8P2|A2Z8P2_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_34083 PE=4 SV=1
Length = 1252

Score = 38.5 bits (88), Expect = 0.17
Identities = 38/159 (23%), Positives = 72/159 (45%), Gaps = 9/159 (5%)
Frame = -1

Query: 452 SEDNAVYKI---QEEKIVGEIDADSISSMPEGLTSVLSSRVGRSFVGLKAAKSGDRG--- 291
++ +AV+ + + +I I D++ + EG S + + ++ GD
Sbjct: 720 NQQDAVFSVLGQESRRIEDAIYEDNLFILDEGSEESDSKYPVHAALSSSSSLVGDNTYYT 779

Query: 290 -KEEGLSPTKHESTFSFYFADGENQWKDMVEPALPYPALVILDCVRGGQFIFPTHNQSID 114
+E P +H + S +F+DG + + P+LVI+D ++ ++FP I+
Sbjct: 780 EQETPSIPDEHFAG-SLFFSDGGYRLLQTLTGGSRMPSLVIIDPIQQKHYVFP---DEIE 835

Query: 113 FT--SLKVFLTSLQLRSCLKTYLSEVAQTKPRKRVQPPF 3
FT SL FL RS Y S ++ ++ ++PPF
Sbjct: 836 FTYPSLANFLDHFMNRSLSPYYRSALSVISSKELLRPPF 874


>tr|B2KE73|B2KE73_ELUMP Phosphoglucomutase/phosphomannomutase
alpha/beta/alpha domain I OS=Elusimicrobium minutum
(strain Pei191) GN=Emin_1269 PE=4 SV=1
Length = 518

Score = 35.0 bits (79), Expect = 1.9
Identities = 30/120 (25%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Frame = -1

Query: 473 ELSKLLLSEDNAVYKIQEEKIVGE--------IDADSISSMPEGLTSVLSSRVGRSFVGL 318
E+ ++ L E I+EE ++ ID D+I +GL + + G S
Sbjct: 171 EIKEIGLEEAKQSGLIKEEDVITPYITELAKVIDFDAIKE--KGLKAAIHPMGGTSLPFY 228

Query: 317 KAAKSGDRGKEEGLSPTKHESTFSFYFADGENQWKDMVEPALPYPALVILDCVRGGQFIF 138
KA K ++ K + L+ +FYF ++ K ++P+ YP ++D V G++ F
Sbjct: 229 KAIK--EKYKLDNLTIVNETIDPTFYFIPLDHDGKTRMDPSSQYPMKPLIDIVAAGEYDF 286


>tr|Q73TD8|Q73TD8_MYCPA Putative uncharacterized protein
OS=Mycobacterium paratuberculosis GN=MAP_3780 PE=4 SV=1
Length = 1329

Score = 34.3 bits (77), Expect = 3.2
Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Frame = -1

Query: 410 VGEI-DADSISSMPEGLTSVLSSRVGRSFVGLKAAKSGDRGKEE----------GLSPTK 264
VG+I D D +S GL V S V R +G++ A + GKE G +P K
Sbjct: 645 VGKIKDIDKNTSYRIGL-KVASPSVSRQIIGVEDAYHIESGKEHKGVGFLVPAPGATPIK 703

Query: 263 HESTFSFYFADGENQWKDMVEPALPYPALVILDCVRGGQFIFPTHNQSIDFT 108
ST+ D + K +V P++P P + V Q T ++ T
Sbjct: 704 FRSTYVDGIYDPPQKAKSLVVPSIPEPKVFTAGRVEPDQDTVITSPDEVELT 755


>tr|B3P5X4|B3P5X4_DROER GG12094 OS=Drosophila erecta GN=GG12094 PE=4
SV=1
Length = 293

Score = 33.9 bits (76), Expect = 4.2
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Frame = -1

Query: 425 QEEKIVGE-IDADSISSMPEGLTSVLSSRVGRSFVGLKAAKSGDR-GKEEGLSPTKHEST 252
Q ++VG ID+ S SS ++S SS GL A + G G GLS + S
Sbjct: 123 QGHEVVGNAIDSPSSSSSHSSMSSSSSSSSQMYGSGLHAHRIGSNMGGLSGLSGSGSYSG 182

Query: 251 FSFYFADGENQWKDMVEPALP 189
+ G N W+++V PA+P
Sbjct: 183 YGNVMHWGHNDWRNVVLPAVP 203


>tr|Q7V6R0|Q7V6R0_PROMM Similar to UvrD/REP helicase
OS=Prochlorococcus marinus (strain MIT 9313) GN=recB PE=4
SV=1
Length = 1274

Score = 33.1 bits (74), Expect = 7.1
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = -1

Query: 455 LSEDNAVYKIQEEKIVGEIDADSISSMPEGLTSVLSSRVGRSFVGLK 315
L + NAV I+EE +D ++S+ +GL VLS+ +G S GL+
Sbjct: 1027 LQDPNAVIVIEEELRRAGLDITLLASVQDGLDRVLSTPIGGSLGGLR 1073


>tr|A2C8A3|A2C8A3_PROM3 Possible UvrD/REP helicase subunit B
OS=Prochlorococcus marinus (strain MIT 9303) GN=recB PE=4
SV=1
Length = 1274

Score = 33.1 bits (74), Expect = 7.1
Identities = 18/47 (38%), Positives = 28/47 (59%)
Frame = -1

Query: 455 LSEDNAVYKIQEEKIVGEIDADSISSMPEGLTSVLSSRVGRSFVGLK 315
L + NAV I+EE +D ++S+ +GL VLS+ +G S GL+
Sbjct: 1027 LQDPNAVIVIEEELRRAGLDITLLASVQDGLDRVLSTPIGGSLGGLR 1073