BP917984
Clone id YMU001_000108_C01
Library
Length 515
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_C01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
GACAAACGATATTTTTGAAGTGGCGATGGCAGTCCTATGGTGTAGCGCTTATAGTGGTCC
TTTAAGGTTATTAGTTTGAAGAAAGAGACTGGGAGGTAAATGTCCAAAAACCTTTGATTG
TAGTTGTCCATAGTTTTAGTGGCCAACATTTCCAAGTTACGCCATTATGCCCGAAGCTGG
ACCTCAAACAAGGAGACCATGTGACTTCAAGCCAAAATATTCTTGAAAGCTTGCCAAGTC
CTTGGAGCGTTAGGCTTTGTGGCTATAGAACTCCACCACTGCATAACATTGTCTTTGAGA
AAAGCGGCTACTTGAGAGATTTTGGATTCTTCTGTGTAGTTTCCCAATGCATAAATATTG
TCGAATCGTCGTAAAAACTGCTTTTGCCGATCTTATAAAGTGAAAAAGTTTATCGTTGAT
CCACCATCCTTGAAGTCTTTGGGCTGATTTGGTGCAAGTCACAAAAGTGGATAATAGGGA
TAGGCGTACATTCTCCAACTGGGAAGTATAGGAGT
■■Homology search results ■■ -
sp_hit_id Q6FS63
Definition sp|Q6FS63|MAD1_CANGA Spindle assembly checkpoint component MAD1 OS=Candida glabrata
Align length 148
Score (bit) 31.6
E-value 2.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917984|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_C01.
(515 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6FS63|MAD1_CANGA Spindle assembly checkpoint component MAD1 ... 32 2.3
sp|Q64595|KGP2_RAT cGMP-dependent protein kinase 2 OS=Rattus nor... 31 3.0
sp|Q61410|KGP2_MOUSE cGMP-dependent protein kinase 2 OS=Mus musc... 31 3.0
sp|Q13237|KGP2_HUMAN cGMP-dependent protein kinase 2 OS=Homo sap... 31 3.0
sp|Q6CHI1|RAD18_YARLI Postreplication repair E3 ubiquitin-protei... 31 3.9
sp|Q87A33|RPOC_XYLFT DNA-directed RNA polymerase subunit beta' O... 30 5.1
sp|Q9PA87|RPOC_XYLFA DNA-directed RNA polymerase subunit beta' O... 30 5.1
sp|Q8KTH8|RPOC_XANOR DNA-directed RNA polymerase subunit beta' O... 30 6.7
sp|B2SQQ2|RPOC_XANOP DNA-directed RNA polymerase subunit beta' O... 30 6.7
sp|Q2NZX9|RPOC_XANOM DNA-directed RNA polymerase subunit beta' O... 30 6.7
sp|Q8PC55|RPOC_XANCP DNA-directed RNA polymerase subunit beta' O... 30 6.7
sp|B0RU88|RPOC_XANCB DNA-directed RNA polymerase subunit beta' O... 30 6.7
sp|Q4URD3|RPOC_XANC8 DNA-directed RNA polymerase subunit beta' O... 30 6.7
sp|Q3BWZ0|RPOC_XANC5 DNA-directed RNA polymerase subunit beta' O... 30 6.7
sp|Q8PNS9|RPOC_XANAC DNA-directed RNA polymerase subunit beta' O... 30 6.7
sp|B2FQ39|RPOC_STRMK DNA-directed RNA polymerase subunit beta' O... 30 6.7
sp|Q18195|ELP4_CAEEL Putative elongator complex protein 4 OS=Cae... 30 8.7
sp|Q9NDJ2|DOM_DROME Helicase domino OS=Drosophila melanogaster G... 30 8.7

>sp|Q6FS63|MAD1_CANGA Spindle assembly checkpoint component MAD1
OS=Candida glabrata GN=MAD1 PE=3 SV=1
Length = 657

Score = 31.6 bits (70), Expect = 2.3
Identities = 37/148 (25%), Positives = 64/148 (43%), Gaps = 8/148 (5%)
Frame = -1

Query: 449 NQPKDFKDGGST-------INFFTL*DRQ-KQFLRRFDNIYALGNYTEESKISQVAAFLK 294
N+ F +G +T +N++ ++Q Q L + +IY +E+++ + LK
Sbjct: 208 NENASFSNGYNTLMSMKNSVNYWKNENQQLNQKLSEYSDIY---QQLQEAQLEIME--LK 262

Query: 293 DNVMQWWSSIATKPNAPRTWQAFKNILA*SHMVSLFEVQLRA*WRNLEMLATKTMDNYNQ 114
N+ +W ++ K Q N + H + FE Q R E LA YN
Sbjct: 263 ANLEEWNKFLSNKKQ-----QDNSNDYSIDHFIIEFESQRRELNMVTEELAEVKKSYYNS 317

Query: 113 RFLDIYLPVSFFKLITLKDHYKRYTIGL 30
+ L+ L + +L+ LKD Y+ I L
Sbjct: 318 KILNDELALERNQLLKLKDDYENNIINL 345


>sp|Q64595|KGP2_RAT cGMP-dependent protein kinase 2 OS=Rattus
norvegicus GN=Prkg2 PE=2 SV=1
Length = 762

Score = 31.2 bits (69), Expect = 3.0
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +3

Query: 177 LDLKQGDHVTSSQNILESLPSPWSVRLCGYRT 272
+D KQ +HV S + ILE L SP+ V+L YRT
Sbjct: 490 VDTKQQEHVYSEKRILEELCSPFIVKL--YRT 519


>sp|Q61410|KGP2_MOUSE cGMP-dependent protein kinase 2 OS=Mus
musculus GN=Prkg2 PE=2 SV=1
Length = 762

Score = 31.2 bits (69), Expect = 3.0
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +3

Query: 177 LDLKQGDHVTSSQNILESLPSPWSVRLCGYRT 272
+D KQ +HV S + ILE L SP+ V+L YRT
Sbjct: 490 VDTKQQEHVYSEKRILEELCSPFIVKL--YRT 519


>sp|Q13237|KGP2_HUMAN cGMP-dependent protein kinase 2 OS=Homo
sapiens GN=PRKG2 PE=1 SV=1
Length = 762

Score = 31.2 bits (69), Expect = 3.0
Identities = 17/32 (53%), Positives = 22/32 (68%)
Frame = +3

Query: 177 LDLKQGDHVTSSQNILESLPSPWSVRLCGYRT 272
+D KQ +HV S + ILE L SP+ V+L YRT
Sbjct: 490 VDTKQQEHVYSEKRILEELCSPFIVKL--YRT 519


>sp|Q6CHI1|RAD18_YARLI Postreplication repair E3 ubiquitin-protein
ligase RAD18 OS=Yarrowia lipolytica GN=RAD18 PE=3 SV=1
Length = 344

Score = 30.8 bits (68), Expect = 3.9
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = -1

Query: 386 QKQFLRRFDNIYALGNYTEESKISQVAAFLKDNVMQWWSSIATKPNAPRTWQAFKNI 216
++ RR+D L N ++K + + +KD++ +W +++ NA KNI
Sbjct: 220 KQTLFRRYDEWVTLWNANVDNKTPRSKSDIKDDLRRWETTVVANENAQPVKMTIKNI 276


>sp|Q87A33|RPOC_XYLFT DNA-directed RNA polymerase subunit beta'
OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964)
GN=rpoC PE=3 SV=1
Length = 1407

Score = 30.4 bits (67), Expect = 5.1
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3

Query: 108 KPLIVVVHSFSGQHFQVTPLCPKLDLKQGDHVTSSQNILESLPSPWSV-RLCG 263
K +++ + +H ++ P ++ + +G+HVT + I++ PSP + RL G
Sbjct: 1173 KQRLIIKDADGSEHEELIPKYRQIIVFEGEHVTKGETIVDGEPSPQDILRLLG 1225


>sp|Q9PA87|RPOC_XYLFA DNA-directed RNA polymerase subunit beta'
OS=Xylella fastidiosa GN=rpoC PE=3 SV=2
Length = 1407

Score = 30.4 bits (67), Expect = 5.1
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3

Query: 108 KPLIVVVHSFSGQHFQVTPLCPKLDLKQGDHVTSSQNILESLPSPWSV-RLCG 263
K +++ + +H ++ P ++ + +G+HVT + I++ PSP + RL G
Sbjct: 1173 KQRLIIKDADGSEHEELIPKYRQIIVFEGEHVTKGETIVDGEPSPQDILRLLG 1225


>sp|Q8KTH8|RPOC_XANOR DNA-directed RNA polymerase subunit beta'
OS=Xanthomonas oryzae pv. oryzae GN=rpoC PE=3 SV=2
Length = 1405

Score = 30.0 bits (66), Expect = 6.7
Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3

Query: 108 KPLIVVVHSFSGQHFQVTPLCPKLDLKQGDHVTSSQNILESLPSPWSV-RLCG 263
K +++ + +H ++ P ++ + +G+HVT + +++ PSP + RL G
Sbjct: 1174 KQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLG 1226


>sp|B2SQQ2|RPOC_XANOP DNA-directed RNA polymerase subunit beta'
OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=rpoC
PE=3 SV=1
Length = 1405

Score = 30.0 bits (66), Expect = 6.7
Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3

Query: 108 KPLIVVVHSFSGQHFQVTPLCPKLDLKQGDHVTSSQNILESLPSPWSV-RLCG 263
K +++ + +H ++ P ++ + +G+HVT + +++ PSP + RL G
Sbjct: 1174 KQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLG 1226


>sp|Q2NZX9|RPOC_XANOM DNA-directed RNA polymerase subunit beta'
OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018)
GN=rpoC PE=3 SV=1
Length = 1405

Score = 30.0 bits (66), Expect = 6.7
Identities = 13/53 (24%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +3

Query: 108 KPLIVVVHSFSGQHFQVTPLCPKLDLKQGDHVTSSQNILESLPSPWSV-RLCG 263
K +++ + +H ++ P ++ + +G+HVT + +++ PSP + RL G
Sbjct: 1174 KQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLG 1226


tr_hit_id A2I5E5
Definition tr|A2I5E5|A2I5E5_BETVU Retrotransposon protein OS=Beta vulgaris
Align length 95
Score (bit) 37.7
E-value 0.34
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917984|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_C01.
(515 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A2I5E5|A2I5E5_BETVU Retrotransposon protein OS=Beta vulgaris ... 38 0.34
tr|Q9AXC5|Q9AXC5_ANTHI Putative uncharacterized protein OS=Antir... 37 0.75
tr|Q2R3E8|Q2R3E8_ORYSJ Retrotransposon protein, putative, Ty3-gy... 33 0.89
tr|A2PUU9|A2PUU9_VIBCH A/G-specific adenine glycosylase OS=Vibri... 36 0.98
tr|Q9ZPF9|Q9ZPF9_ARATH Putative polyprotein OS=Arabidopsis thali... 36 0.98
tr|Q7X7I2|Q7X7I2_ORYSJ OSJNBb0069N01.1 protein (OSJNBa0013A04.20... 36 1.3
tr|Q0JEJ1|Q0JEJ1_ORYSJ Os04g0262800 protein OS=Oryza sativa subs... 36 1.3
tr|Q7XQZ3|Q7XQZ3_ORYSJ OSJNBb0045P24.9 protein OS=Oryza sativa s... 32 1.4
tr|Q8RUU3|Q8RUU3_ORYSJ Retrotransposon protein, putative, unclas... 35 1.7
tr|Q33A89|Q33A89_ORYSJ Retrotransposon protein, putative, unclas... 35 1.7
tr|A5F9I6|A5F9I6_VIBC3 A/G-specific adenine glycosylase OS=Vibri... 35 2.2
tr|A6Y418|A6Y418_VIBCH A/G-specific adenine glycosylase OS=Vibri... 35 2.2
tr|A6XXL0|A6XXL0_VIBCH A/G-specific adenine glycosylase OS=Vibri... 35 2.2
tr|A6AAG4|A6AAG4_VIBCH A/G-specific adenine glycosylase OS=Vibri... 35 2.2
tr|A6A5B6|A6A5B6_VIBCH A/G-specific adenine glycosylase OS=Vibri... 35 2.2
tr|A3ELU7|A3ELU7_VIBCH A/G-specific adenine glycosylase OS=Vibri... 35 2.2
tr|A2PD72|A2PD72_VIBCH A/G-specific adenine glycosylase OS=Vibri... 35 2.2
tr|A1F878|A1F878_VIBCH A/G-specific adenine glycosylase OS=Vibri... 35 2.2
tr|Q75J00|Q75J00_ORYSJ Retrotransposon protein, putative, Ty3-gy... 35 2.9
tr|Q3EAR2|Q3EAR2_ARATH Uncharacterized protein At3g42723.1 OS=Ar... 35 2.9
tr|Q10JP7|Q10JP7_ORYSJ Retrotransposon protein, putative, Ty3-gy... 35 2.9
tr|Q9KUR3|Q9KUR3_VIBCH A/G-specific adenine glycosylase OS=Vibri... 34 3.7
tr|A3H1Z8|A3H1Z8_VIBCH A/G-specific adenine glycosylase OS=Vibri... 34 3.7
tr|A3GQJ9|A3GQJ9_VIBCH A/G-specific adenine glycosylase OS=Vibri... 34 3.7
tr|A3EEC3|A3EEC3_VIBCH A/G-specific adenine glycosylase OS=Vibri... 34 3.7
tr|A2PLM8|A2PLM8_VIBCH A/G-specific adenine glycosylase OS=Vibri... 34 3.7
tr|A1EPZ6|A1EPZ6_VIBCH A/G-specific adenine glycosylase OS=Vibri... 34 3.7
tr|Q5JPX1|Q5JPX1_ORYSA OSJNBa0085C10.20 protein OS=Oryza sativa ... 34 3.7
tr|A7T2G6|A7T2G6_NEMVE Predicted protein (Fragment) OS=Nematoste... 34 3.7
tr|A5BSX0|A5BSX0_VITVI Putative uncharacterized protein OS=Vitis... 33 6.4

>tr|A2I5E5|A2I5E5_BETVU Retrotransposon protein OS=Beta vulgaris
PE=4 SV=1
Length = 1501

Score = 37.7 bits (86), Expect = 0.34
Identities = 21/95 (22%), Positives = 42/95 (44%), Gaps = 2/95 (2%)
Frame = -1

Query: 383 KQFLRRFDNIYALGNYTEESKISQVAAFLKDNVMQWWSSIATKPNAPR--TWQAFKNILA 210
+ ++R F+ ++ + N + ++ Q +LKD WW + +A W+AF +L
Sbjct: 54 ENWIREFEKLFEVVNCPADMRVGQAVLYLKDEADLWWRENGARLSAAEGFNWEAFVIVLR 113

Query: 209 *SHMVSLFEVQLRA*WRNLEMLATKTMDNYNQRFL 105
+ Q + NL M + T+ Y +F+
Sbjct: 114 GKFYPAFMRKQKAQEFINLRM-GSMTISEYYSKFI 147


>tr|Q9AXC5|Q9AXC5_ANTHI Putative uncharacterized protein
OS=Antirrhinum hispanicum PE=4 SV=1
Length = 1299

Score = 36.6 bits (83), Expect = 0.75
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Frame = -1

Query: 389 RQKQFLRRFDNIYALGNYTEESKISQVAAFLKDNVMQWWSSIATK---PNAPRTWQAF 225
+ + ++ + I+++ NY EE K++ A L+D WW + + PRTW F
Sbjct: 271 KPESWVEEMEKIFSVTNYKEEKKVNFAAFRLEDAARHWWRILDQRWKNDMTPRTWDNF 328


>tr|Q2R3E8|Q2R3E8_ORYSJ Retrotransposon protein, putative, Ty3-gypsy
subclass OS=Oryza sativa subsp. japonica
GN=LOC_Os11g32180 PE=4 SV=1
Length = 820

Score = 32.7 bits (73), Expect(2) = 0.89
Identities = 16/74 (21%), Positives = 32/74 (43%)
Frame = -1

Query: 332 EESKISQVAAFLKDNVMQWWSSIATKPNAPRTWQAFKNILA*SHMVSLFEVQLRA*WRNL 153
E+ ++ Q ++ KD + WW+ ++ + P TW+ K + + + LR L
Sbjct: 207 EQHRVRQASSEFKDFAIMWWAGLSDEGVLPTTWEELKVAMRDRSVPPSYHRDLRKKLMCL 266

Query: 152 EMLATKTMDNYNQR 111
E D Y ++
Sbjct: 267 EQGDKSVQDYYGEK 280



Score = 22.3 bits (46), Expect(2) = 0.89
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2

Query: 454 HQISPKTSRMVDQR*TFSLYKIGKSSFYDDSTIFMHWETT 335
HQ +R+ D +KI S Y D+ ++ WE T
Sbjct: 156 HQQGNNNNRVPDDPYAKVKFKIPSFSGYYDAEKYLDWEMT 195


>tr|A2PUU9|A2PUU9_VIBCH A/G-specific adenine glycosylase OS=Vibrio
cholerae MZO-3 GN=mutY PE=4 SV=1
Length = 353

Score = 36.2 bits (82), Expect = 0.98
Identities = 21/76 (27%), Positives = 35/76 (46%)
Frame = +3

Query: 87 DWEVNVQKPLIVVVHSFSGQHFQVTPLCPKLDLKQGDHVTSSQNILESLPSPWSVRLCGY 266
D + QK LI H+FS H +TP+ +L K + S+ + +L P + L
Sbjct: 278 DSTITSQKTLIAFRHTFSHYHLDITPILLQLSRKPDIVMEGSKGLWYNLSQPDEIGLAAP 337

Query: 267 RTPPLHNIVFEKSGYL 314
LH++ FE ++
Sbjct: 338 VKQLLHSLPFEIDSHI 353


>tr|Q9ZPF9|Q9ZPF9_ARATH Putative polyprotein OS=Arabidopsis thaliana
GN=AT4g07850 PE=2 SV=1
Length = 1138

Score = 36.2 bits (82), Expect = 0.98
Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Frame = -1

Query: 338 YTEESKISQVAAFLKDNVMQWWSSIATK-----PNAPRTWQAFKNILA*SHMVSLFEVQL 174
YTE +K+ A D + WW + T ++ TW KNI+ + S + +L
Sbjct: 90 YTEANKVKVAATEFYDYALSWWDQVVTTKRRLGDDSIETWNQLKNIMKRRFVPSHYHREL 149

Query: 173 RA*WRNLEMLATKTMDNY 120
RNL + +T++ Y
Sbjct: 150 HQRLRNL-VQGNRTVEEY 166


>tr|Q7X7I2|Q7X7I2_ORYSJ OSJNBb0069N01.1 protein (OSJNBa0013A04.20
protein) OS=Oryza sativa subsp. japonica
GN=OSJNBb0069N01.1 PE=4 SV=1
Length = 1395

Score = 35.8 bits (81), Expect = 1.3
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Frame = -1

Query: 377 FLRRFDNIYALGNYTEESKISQVAAFLKDNVMQWWSSIATKPNAPRTWQAFKNILA*SHM 198
FL R + + E+ K+ + L D QW++ + + + P +W F +L +
Sbjct: 132 FLNRCEQLIWGQRTPEDDKVWLASYHLLDGAQQWYTCLE-RDHGPPSWHRFSELLNMRYG 190

Query: 197 VSLFEVQLRA*WRNLEMLA---TKTMDNYNQRFLDIYLPVSFFKLITLKDHYKRYTIGLP 27
L L E+ A T T+D+Y FLD+ + ++ + +TIGL
Sbjct: 191 PLLRSAPLG------ELAAYRRTSTVDDYTDHFLDLLARAGY---LSEDQQVQLFTIGLQ 241

Query: 26 SPL 18
P+
Sbjct: 242 EPM 244


>tr|Q0JEJ1|Q0JEJ1_ORYSJ Os04g0262800 protein OS=Oryza sativa subsp.
japonica GN=Os04g0262800 PE=4 SV=1
Length = 1425

Score = 35.8 bits (81), Expect = 1.3
Identities = 29/123 (23%), Positives = 52/123 (42%), Gaps = 3/123 (2%)
Frame = -1

Query: 377 FLRRFDNIYALGNYTEESKISQVAAFLKDNVMQWWSSIATKPNAPRTWQAFKNILA*SHM 198
FL R + + E+ K+ + L D QW++ + + + P +W F +L +
Sbjct: 132 FLNRCEQLIWGQRTPEDDKVWLASYHLLDGAQQWYTCLE-RDHGPPSWHRFSELLNMRYG 190

Query: 197 VSLFEVQLRA*WRNLEMLA---TKTMDNYNQRFLDIYLPVSFFKLITLKDHYKRYTIGLP 27
L L E+ A T T+D+Y FLD+ + ++ + +TIGL
Sbjct: 191 PLLRSAPLG------ELAAYRRTSTVDDYTDHFLDLLARAGY---LSEDQQVQLFTIGLQ 241

Query: 26 SPL 18
P+
Sbjct: 242 EPM 244


>tr|Q7XQZ3|Q7XQZ3_ORYSJ OSJNBb0045P24.9 protein OS=Oryza sativa
subsp. japonica GN=OSJNBb0045P24.9 PE=4 SV=1
Length = 1361

Score = 32.0 bits (71), Expect(2) = 1.4
Identities = 16/73 (21%), Positives = 29/73 (39%)
Frame = -1

Query: 332 EESKISQVAAFLKDNVMQWWSSIATKPNAPRTWQAFKNILA*SHMVSLFEVQLRA*WRNL 153
E+ ++ Q ++ KD + WW + + P TW+ K + + + LR L
Sbjct: 364 EQHRVRQASSEFKDFAIMWWVGLTAEGVLPTTWEELKVAMRNRFVPPSYHRDLRKKLMRL 423

Query: 152 EMLATKTMDNYNQ 114
E D Y +
Sbjct: 424 EQGDKSVQDYYGE 436



Score = 22.3 bits (46), Expect(2) = 1.4
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = -2

Query: 454 HQISPKTSRMVDQR*TFSLYKIGKSSFYDDSTIFMHWETT 335
HQ +R+ D +KI S Y D+ ++ WE T
Sbjct: 313 HQQGNNNNRVSDDPYAKVKFKIPSFSGYYDAEKYLDWEMT 352


>tr|Q8RUU3|Q8RUU3_ORYSJ Retrotransposon protein, putative,
unclassified (Putative gag-pol polyprotein) OS=Oryza
sativa subsp. japonica GN=OSJNBa0014J14.7 PE=4 SV=1
Length = 1338

Score = 35.4 bits (80), Expect = 1.7
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Frame = -1

Query: 377 FLRRFDNIYALGNYTEESKISQVAAFLKDNVMQWWSSIATKPNAPRTWQAFKNILA*SHM 198
FL R + + E++K+ + L D QW++ + + + P +W F +L +
Sbjct: 125 FLNRCEQFFRGQRTPEDNKVWLASYHLLDGAQQWYTRLE-RDHEPPSWHRFSELLNMRYG 183

Query: 197 VSLFEVQLRA*WRNLEMLA---TKTMDNYNQRFLDI 99
L L E+ A T T+D+Y +RFLD+
Sbjct: 184 PPLHSTPLG------ELAACRRTTTVDDYAERFLDL 213


>tr|Q33A89|Q33A89_ORYSJ Retrotransposon protein, putative,
unclassified, expressed OS=Oryza sativa subsp. japonica
GN=LOC_Os10g13960 PE=4 SV=1
Length = 1347

Score = 35.4 bits (80), Expect = 1.7
Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Frame = -1

Query: 377 FLRRFDNIYALGNYTEESKISQVAAFLKDNVMQWWSSIATKPNAPRTWQAFKNILA*SHM 198
FL R + + E++K+ + L D QW++ + + + P +W F +L +
Sbjct: 125 FLNRCEQFFRGQRTPEDNKVWLASYHLLDGAQQWYTRLE-RDHEPPSWHRFSELLNMRYG 183

Query: 197 VSLFEVQLRA*WRNLEMLA---TKTMDNYNQRFLDI 99
L L E+ A T T+D+Y +RFLD+
Sbjct: 184 PPLHSTPLG------ELAACRRTTTVDDYAERFLDL 213