BP917987 |
Clone id |
YMU001_000108_C04 |
Library |
YMU01 |
Length |
432 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000108_C04. |
Accession |
BP917987 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
CGACGCCATCCGCAGCGAGCCCTTCACGCTCAACGTGCCCTCCGCCCTTCTCCAAATCTC CTCCCAATGTCGCGTCGATTTTGGCCTCTCTCCGTCTGGCCAACTTACTTGTGCAAGCAC CTGTATTATCGGTTTGTTTTTGGCACCGGATTGATGAGGTGTTGTGTTCGACTCTCCCAA CTCCATTTCAGCTCTTTCTCAAATCCATTTCGGGCTTCACATTAACGTATGCCAAATGCT GGCATATCCATGGTGTGATTATTGCTCCATCGACACACCAACATACCTAAATCTTCATAT ATATCCCATATCTCCCCAAGTCATGATGCATGCATGTATAGCATCCTTCTTAGATTAACG GTACCTTAGATCTATTTTGTTTATGCTCCCATAGTTGTATCAGTCTCACTATGAGTTCAC TATGACTCTAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q2QI47 |
Definition |
sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus |
Align length |
30 |
Score (bit) |
33.5 |
E-value |
0.39 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A1YGP7 |
Definition |
tr|A1YGP7|A1YGP7_PRUTE S-RNase (Fragment) OS=Prunus tenella |
Align length |
51 |
Score (bit) |
35.4 |
E-value |
1.4 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP917987|Adiantum capillus-veneris mRNA, clone: YMU001_000108_C04. (432 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A1YGP7|A1YGP7_PRUTE S-RNase (Fragment) OS=Prunus tenella GN=S... 35 1.4 tr|A4H3P8|A4H3P8_LEIBR Putative uncharacterized protein OS=Leish... 35 1.4 tr|Q93XH1|Q93XH1_PRUDU Si-RNase (Fragment) OS=Prunus dulcis PE=3... 35 1.9 tr|Q8W186|Q8W186_PRUDU RNase (Fragment) OS=Prunus dulcis GN=S PE... 35 1.9 tr|Q8W187|Q8W187_PRUDU RNase (Fragment) OS=Prunus dulcis GN=S PE... 34 4.2 tr|Q1KPK2|Q1KPK2_MOUSE Usherin (Fragment) OS=Mus musculus GN=Ush... 33 5.4 tr|A9JN88|A9JN88_9ROSA Self-incompatibility ribonuclease (Fragme... 33 5.4 tr|Q3BNK1|Q3BNK1_XANC5 Putative membrane protein OS=Xanthomonas ... 33 5.5 tr|Q9MBD2|Q9MBD2_9ROSA Sa-RNase (Fragment) OS=Prunus salicina PE... 33 7.1 tr|Q8H973|Q8H973_9ROSA Sa-RNase (Fragment) OS=Prunus salicina GN... 33 7.1 tr|Q7XBA8|Q7XBA8_9ROSA S1-RNase (Fragment) OS=Prunus salicina GN... 33 7.1 tr|Q4F8N5|Q4F8N5_PRUDU S-RNase OS=Prunus dulcis GN=Sm PE=2 SV=1 33 7.1 tr|B6HYG9|B6HYG9_9ROSA Self-incompatibility ribonuclease (Fragme... 33 7.1 tr|B4UTI7|B4UTI7_PRUAV SRNase (Fragment) OS=Prunus avium GN=SRNa... 33 7.1 tr|B1P2G2|B1P2G2_9ROSA Self-incompatibility associated ribonucle... 33 7.1 tr|A9JN94|A9JN94_PRUDO Self-incompatibility ribonuclease (Fragme... 33 7.1 tr|A8DMS0|A8DMS0_9ROSA Ribonuclease S1 (Fragment) OS=Prunus pseu... 33 7.1 tr|A1IHE2|A1IHE2_PRUPE S2-RNase OS=Prunus persica PE=3 SV=1 33 7.1 tr|A1IHD6|A1IHD6_9ROSA Sa-RNase OS=Prunus salicina PE=3 SV=1 33 7.1 tr|B2G4E6|B2G4E6_ZYGRO Uncharacterised protein KLLA0E11957g OS=Z... 33 7.1 tr|Q84LI5|Q84LI5_PRUAR Incompatibility S-RNase (Fragment) OS=Pru... 33 9.3 tr|Q0R4J8|Q0R4J8_9ROSA S2' S-RNAse (S2 S-RNase) (Fragment) OS=Pr... 33 9.3 tr|B1NP05|B1NP05_PRUDU S-RNase (Fragment) OS=Prunus dulcis GN=S-... 33 9.3 tr|B1NP00|B1NP00_PRUDU S-RNase (Fragment) OS=Prunus dulcis GN=S-... 33 9.3 tr|A5YW91|A5YW91_9ROSA Self-incompatibility S6-RNase (Fragment) ... 33 9.3 tr|A4PHX5|A4PHX5_9ROSA S-RNase (Fragment) OS=Prunus speciosa GN=... 33 9.3 tr|A4PHV1|A4PHV1_9ROSA S-RNase (Fragment) OS=Prunus speciosa GN=... 33 9.3 tr|A0FGT6|A0FGT6_9ROSA S-RNase (Fragment) OS=Prunus webbii GN=S6... 33 9.3 tr|B8PHA2|B8PHA2_9APHY Predicted protein OS=Postia placenta Mad-... 33 9.3
>tr|A1YGP7|A1YGP7_PRUTE S-RNase (Fragment) OS=Prunus tenella GN=S6 PE=3 SV=1 Length = 171
Score = 35.4 bits (80), Expect = 1.4 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%) Frame = -1
Query: 171 SNTTPHQ-SGAKNKPIIQVLAQVSWPDGERPKSTRHWEEIWRRAEGTLSVK 22 SN T Q G K P ++ ++SWPD E T+ WE W + GT SV+ Sbjct: 50 SNCTGSQFDGRKLYPHMRSKLKISWPDVESGNDTKFWESEWNK-HGTCSVE 99
>tr|A4H3P8|A4H3P8_LEIBR Putative uncharacterized protein OS=Leishmania braziliensis GN=LbrM03_V2.0770 PE=4 SV=1 Length = 1429
Score = 35.4 bits (80), Expect = 1.4 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%) Frame = -3
Query: 124 TGACTSKLARRREAKIDATLGGDLEKGGGHVER-EGLAADGV 2 +G C+S R + DATLG + ++GG H+ER EG A+ V Sbjct: 64 SGVCSSTSGNRAQTADDATLGREGQEGGKHIERIEGTASAAV 105
>tr|Q93XH1|Q93XH1_PRUDU Si-RNase (Fragment) OS=Prunus dulcis PE=3 SV=1 Length = 165
Score = 35.0 bits (79), Expect = 1.9 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = -1
Query: 165 TTPHQSGAKNKPIIQVLAQVSWPDGERPKSTRHWEEIWRRAEGTLS 28 T P K P +++ ++SWPD E TR WE W + GT S Sbjct: 48 TGPKFDARKVSPKMRIKLKISWPDVESGNDTRFWEGEWNK-HGTCS 92
>tr|Q8W186|Q8W186_PRUDU RNase (Fragment) OS=Prunus dulcis GN=S PE=3 SV=2 Length = 162
Score = 35.0 bits (79), Expect = 1.9 Identities = 17/46 (36%), Positives = 23/46 (50%) Frame = -1
Query: 165 TTPHQSGAKNKPIIQVLAQVSWPDGERPKSTRHWEEIWRRAEGTLS 28 T P K P +++ ++SWPD E TR WE W + GT S Sbjct: 46 TGPKFDARKVSPKMRIKLKISWPDVESGNDTRFWEGEWNK-HGTCS 90
>tr|Q8W187|Q8W187_PRUDU RNase (Fragment) OS=Prunus dulcis GN=S PE=3 SV=1 Length = 162
Score = 33.9 bits (76), Expect = 4.2 Identities = 16/38 (42%), Positives = 20/38 (52%) Frame = -1
Query: 141 KNKPIIQVLAQVSWPDGERPKSTRHWEEIWRRAEGTLS 28 K P +Q ++SWPD E TR WE W + GT S Sbjct: 53 KLSPKLQNKVKISWPDVESGNDTRFWESEWNK-HGTCS 89
>tr|Q1KPK2|Q1KPK2_MOUSE Usherin (Fragment) OS=Mus musculus GN=Ush2a PE=2 SV=1 Length = 208
Score = 33.5 bits (75), Expect = 5.4 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = +1
Query: 13 QRALHAQRALRPSPNLLPMSRRFWPLSVWP 102 QR +H + +R P L+P+ +R PLSV+P Sbjct: 46 QRKIHKEPCIRERPPLVPLQKRMTPLSVYP 75
>tr|A9JN88|A9JN88_9ROSA Self-incompatibility ribonuclease (Fragment) OS=Prunus cerasifera GN=s PE=3 SV=1 Length = 165
Score = 33.5 bits (75), Expect = 5.4 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%) Frame = -1
Query: 132 PIIQVLAQVSWPDGERPKSTRHWEEIWRR----AEGTLS 28 P ++ ++SWPD E TR WE W + +EGTL+ Sbjct: 59 PQLRSKMKISWPDVESGNDTRFWESEWNKHGTCSEGTLN 97
>tr|Q3BNK1|Q3BNK1_XANC5 Putative membrane protein OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=XCV3931 PE=4 SV=1 Length = 423
Score = 33.5 bits (75), Expect = 5.5 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%) Frame = +3
Query: 6 PSAASPSRSTCPPPFSKS-----PPNV--ASILASLRLANLLVQAPVLSVCFWHRIDEVL 164 PS +PS +T PP ++ + PP A LA+ L APV+ W R+ + Sbjct: 173 PSPTAPSGTTWPPGYTAAAATTPPPGAWDAPALAAPAADTALQDAPVVYAGLWRRVAASI 232
Query: 165 CSTLPTPFQLFL 200 +L T F ++L Sbjct: 233 LDSLITTFAVYL 244
>tr|Q9MBD2|Q9MBD2_9ROSA Sa-RNase (Fragment) OS=Prunus salicina PE=2 SV=1 Length = 208
Score = 33.1 bits (74), Expect = 7.1 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = -1
Query: 171 SNTTPHQSGAKNK-PIIQVLAQVSWPDGERPKSTRHWEEIWRRAEGTLS 28 SN T Q +N P +Q ++SWPD E T+ WE W + GT S Sbjct: 58 SNCTGSQFKKQNLYPYMQSKLKISWPDVESGNDTKFWEGEWNK-HGTCS 105
>tr|Q8H973|Q8H973_9ROSA Sa-RNase (Fragment) OS=Prunus salicina GN=PS-Sa PE=3 SV=1 Length = 173
Score = 33.1 bits (74), Expect = 7.1 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = -1
Query: 171 SNTTPHQSGAKNK-PIIQVLAQVSWPDGERPKSTRHWEEIWRRAEGTLS 28 SN T Q +N P +Q ++SWPD E T+ WE W + GT S Sbjct: 58 SNCTGSQFKKQNLYPYMQSKLKISWPDVESGNDTKFWEGEWNK-HGTCS 105
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