BP917987
Clone id YMU001_000108_C04
Library
Length 432
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_C04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence
CGACGCCATCCGCAGCGAGCCCTTCACGCTCAACGTGCCCTCCGCCCTTCTCCAAATCTC
CTCCCAATGTCGCGTCGATTTTGGCCTCTCTCCGTCTGGCCAACTTACTTGTGCAAGCAC
CTGTATTATCGGTTTGTTTTTGGCACCGGATTGATGAGGTGTTGTGTTCGACTCTCCCAA
CTCCATTTCAGCTCTTTCTCAAATCCATTTCGGGCTTCACATTAACGTATGCCAAATGCT
GGCATATCCATGGTGTGATTATTGCTCCATCGACACACCAACATACCTAAATCTTCATAT
ATATCCCATATCTCCCCAAGTCATGATGCATGCATGTATAGCATCCTTCTTAGATTAACG
GTACCTTAGATCTATTTTGTTTATGCTCCCATAGTTGTATCAGTCTCACTATGAGTTCAC
TATGACTCTAAA
■■Homology search results ■■ -
sp_hit_id Q2QI47
Definition sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus
Align length 30
Score (bit) 33.5
E-value 0.39
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917987|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_C04.
(432 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus GN=Ush2A PE=1 SV=1 33 0.39
sp|Q4KLG2|GIMA8_RAT GTPase IMAP family member 8 OS=Rattus norveg... 32 1.5
sp|O75445|USH2A_HUMAN Usherin OS=Homo sapiens GN=USH2A PE=1 SV=3 31 1.9
sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3... 31 2.5
sp|Q8TWS2|GATB_METKA Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransf... 31 2.5
sp|Q8WXI7|MUC16_HUMAN Mucin-16 OS=Homo sapiens GN=MUC16 PE=1 SV=2 30 3.2
sp|Q5AYL5|SEC16_EMENI COPII coat assembly protein sec16 OS=Emeri... 30 4.2
sp|Q7Z3G6|PRIC2_HUMAN Prickle-like protein 2 OS=Homo sapiens GN=... 30 5.5
sp|A3DIE8|HEM1_CLOTH Glutamyl-tRNA reductase OS=Clostridium ther... 30 5.5
sp|Q9LL84|DNLI4_ARATH DNA ligase 4 OS=Arabidopsis thaliana GN=LI... 29 7.1
sp|Q8PAG3|RNT_XANCP Ribonuclease T OS=Xanthomonas campestris pv.... 29 7.3
sp|Q4UT60|RNT_XANC8 Ribonuclease T OS=Xanthomonas campestris pv.... 29 7.3
sp|Q8RC17|ATPA_THETN ATP synthase subunit alpha OS=Thermoanaerob... 29 9.3
sp|P07547|ARO1_EMENI Pentafunctional AROM polypeptide OS=Emerice... 29 9.3
sp|Q9I7U4|TITIN_DROME Titin OS=Drosophila melanogaster GN=sls PE... 29 9.6

>sp|Q2QI47|USH2A_MOUSE Usherin OS=Mus musculus GN=Ush2A PE=1 SV=1
Length = 5193

Score = 33.5 bits (75), Expect = 0.39
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1

Query: 13 QRALHAQRALRPSPNLLPMSRRFWPLSVWP 102
QR +H + +R P L+P+ +R PLSV+P
Sbjct: 5055 QRKIHKEPCIRERPPLVPLQKRMTPLSVYP 5084


>sp|Q4KLG2|GIMA8_RAT GTPase IMAP family member 8 OS=Rattus
norvegicus GN=Gimap8 PE=2 SV=1
Length = 688

Score = 31.6 bits (70), Expect = 1.5
Identities = 14/48 (29%), Positives = 28/48 (58%)
Frame = -1

Query: 165 TTPHQSGAKNKPIIQVLAQVSWPDGERPKSTRHWEEIWRRAEGTLSVK 22
T+ HQ A + L + S GERP+++R E +++++GT +++
Sbjct: 3 TSSHQGAAAGSQMEHRLCETSIGQGERPRASRGQESNFKQSQGTSTLR 50


>sp|O75445|USH2A_HUMAN Usherin OS=Homo sapiens GN=USH2A PE=1 SV=3
Length = 5202

Score = 31.2 bits (69), Expect = 1.9
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = +1

Query: 13 QRALHAQRALRPSPNLLPMSRRFWPLSVWP 102
QR +H + +R P L+P+ +R PL+V+P
Sbjct: 5064 QRKIHKEPYIRERPPLVPLQKRMSPLNVYP 5093


>sp|Q2EG98|PK1L3_MOUSE Polycystic kidney disease protein 1-like 3
OS=Mus musculus GN=Pkd1l3 PE=2 SV=1
Length = 2201

Score = 30.8 bits (68), Expect = 2.5
Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Frame = +3

Query: 3 TPSAASPSRSTCPPPFSKSPPNVAS-ILASLRLANLLVQAPVLSVCFWHRIDEVLC--ST 173
TP+++SP+ T P S SP N+ S AS N+ P S W I EV ST
Sbjct: 558 TPASSSPTNMTSDTPASSSPTNMTSDTPASSSPTNMTSDTPASSSPPWPVITEVTRPEST 617

Query: 174 LP 179
+P
Sbjct: 618 IP 619


>sp|Q8TWS2|GATB_METKA Aspartyl/glutamyl-tRNA(Asn/Gln)
amidotransferase subunit B OS=Methanopyrus kandleri
GN=gatB PE=3 SV=1
Length = 461

Score = 30.8 bits (68), Expect = 2.5
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Frame = +3

Query: 15 ASPSRSTCP-----PPFSKSPPNVASILASLRLANLLVQAPVLSVCFWHRIDEVLCSTLP 179
A P+ +TCP P PPN ++L +L +A++L PVL + + LP
Sbjct: 31 AEPNENTCPVCTGMPGAKPLPPNEEALLIALEIAHMLDCEPVLDRPLYFQRKHYDYPDLP 90

Query: 180 TPFQ 191
+ +Q
Sbjct: 91 SGYQ 94


>sp|Q8WXI7|MUC16_HUMAN Mucin-16 OS=Homo sapiens GN=MUC16 PE=1 SV=2
Length = 22152

Score = 30.4 bits (67), Expect = 3.2
Identities = 19/58 (32%), Positives = 29/58 (50%)
Frame = +3

Query: 6 PSAASPSRSTCPPPFSKSPPNVASILASLRLANLLVQAPVLSVCFWHRIDEVLCSTLP 179
PS S +T PPP S + P S + L + +LL +PV + H E++ S+ P
Sbjct: 7099 PSLLSLPATTSPPPISSTLPVTISS-SPLPVTSLLTSSPVTTTDMLHTSPELVTSSPP 7155


>sp|Q5AYL5|SEC16_EMENI COPII coat assembly protein sec16 OS=Emericella
nidulans GN=sec16 PE=3 SV=1
Length = 1947

Score = 30.0 bits (66), Expect = 4.2
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +3

Query: 6 PSAASPSRSTCPPPFSKSPPNVASILASL 92
P++A+P+R+T PPP + PP+ A+ +S+
Sbjct: 1778 PNSATPARATPPPPKAMGPPSRAASGSSM 1806


>sp|Q7Z3G6|PRIC2_HUMAN Prickle-like protein 2 OS=Homo sapiens
GN=PRICKLE2 PE=1 SV=2
Length = 844

Score = 29.6 bits (65), Expect = 5.5
Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
Frame = +2

Query: 32 NVPSALLQISSQCRVDFGLSPSGQLTCASTCIIGLFLAPD**GVVFDSPNSISALSQI-H 208
N + LQ+ SQC + SP GQ G P+ G F +P S+L+ H
Sbjct: 410 NQTQSPLQLLSQCNIRTSYSPGGQ---------GAGAQPEMWGKHFSNPKRSSSLAMTGH 460

Query: 209 FGLHINVCQMLAYP 250
G I C+ YP
Sbjct: 461 AGSFIKECREDYYP 474


>sp|A3DIE8|HEM1_CLOTH Glutamyl-tRNA reductase OS=Clostridium
thermocellum (strain ATCC 27405 / DSM 1237) GN=hemA PE=3
SV=1
Length = 331

Score = 29.6 bits (65), Expect = 5.5
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +2

Query: 212 GLHINVCQMLAYPWCDYCSIDTPTYLNLHIYPISPQVMMHAC 337
GL+IN ++L CD + D Y N+H+ V+ H C
Sbjct: 62 GLYINPFELL----CDAANFDYEEYSNMHVLRTGVDVIRHLC 99


>sp|Q9LL84|DNLI4_ARATH DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4
PE=1 SV=1
Length = 1219

Score = 29.3 bits (64), Expect = 7.1
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = -3

Query: 205 DLRKS*NGVGRVEHNTSSIRCQKQTDNTGACTSKLARRREAKIDATLGGD 56
D+ + + G + N+S +C K+ + T ++ R R K A +GGD
Sbjct: 1007 DIAEETDSFGEAQRNSSRGKCAKRGKSRVGQTQRVQRSRRGKKAAKIGGD 1056


tr_hit_id A1YGP7
Definition tr|A1YGP7|A1YGP7_PRUTE S-RNase (Fragment) OS=Prunus tenella
Align length 51
Score (bit) 35.4
E-value 1.4
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917987|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_C04.
(432 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A1YGP7|A1YGP7_PRUTE S-RNase (Fragment) OS=Prunus tenella GN=S... 35 1.4
tr|A4H3P8|A4H3P8_LEIBR Putative uncharacterized protein OS=Leish... 35 1.4
tr|Q93XH1|Q93XH1_PRUDU Si-RNase (Fragment) OS=Prunus dulcis PE=3... 35 1.9
tr|Q8W186|Q8W186_PRUDU RNase (Fragment) OS=Prunus dulcis GN=S PE... 35 1.9
tr|Q8W187|Q8W187_PRUDU RNase (Fragment) OS=Prunus dulcis GN=S PE... 34 4.2
tr|Q1KPK2|Q1KPK2_MOUSE Usherin (Fragment) OS=Mus musculus GN=Ush... 33 5.4
tr|A9JN88|A9JN88_9ROSA Self-incompatibility ribonuclease (Fragme... 33 5.4
tr|Q3BNK1|Q3BNK1_XANC5 Putative membrane protein OS=Xanthomonas ... 33 5.5
tr|Q9MBD2|Q9MBD2_9ROSA Sa-RNase (Fragment) OS=Prunus salicina PE... 33 7.1
tr|Q8H973|Q8H973_9ROSA Sa-RNase (Fragment) OS=Prunus salicina GN... 33 7.1
tr|Q7XBA8|Q7XBA8_9ROSA S1-RNase (Fragment) OS=Prunus salicina GN... 33 7.1
tr|Q4F8N5|Q4F8N5_PRUDU S-RNase OS=Prunus dulcis GN=Sm PE=2 SV=1 33 7.1
tr|B6HYG9|B6HYG9_9ROSA Self-incompatibility ribonuclease (Fragme... 33 7.1
tr|B4UTI7|B4UTI7_PRUAV SRNase (Fragment) OS=Prunus avium GN=SRNa... 33 7.1
tr|B1P2G2|B1P2G2_9ROSA Self-incompatibility associated ribonucle... 33 7.1
tr|A9JN94|A9JN94_PRUDO Self-incompatibility ribonuclease (Fragme... 33 7.1
tr|A8DMS0|A8DMS0_9ROSA Ribonuclease S1 (Fragment) OS=Prunus pseu... 33 7.1
tr|A1IHE2|A1IHE2_PRUPE S2-RNase OS=Prunus persica PE=3 SV=1 33 7.1
tr|A1IHD6|A1IHD6_9ROSA Sa-RNase OS=Prunus salicina PE=3 SV=1 33 7.1
tr|B2G4E6|B2G4E6_ZYGRO Uncharacterised protein KLLA0E11957g OS=Z... 33 7.1
tr|Q84LI5|Q84LI5_PRUAR Incompatibility S-RNase (Fragment) OS=Pru... 33 9.3
tr|Q0R4J8|Q0R4J8_9ROSA S2' S-RNAse (S2 S-RNase) (Fragment) OS=Pr... 33 9.3
tr|B1NP05|B1NP05_PRUDU S-RNase (Fragment) OS=Prunus dulcis GN=S-... 33 9.3
tr|B1NP00|B1NP00_PRUDU S-RNase (Fragment) OS=Prunus dulcis GN=S-... 33 9.3
tr|A5YW91|A5YW91_9ROSA Self-incompatibility S6-RNase (Fragment) ... 33 9.3
tr|A4PHX5|A4PHX5_9ROSA S-RNase (Fragment) OS=Prunus speciosa GN=... 33 9.3
tr|A4PHV1|A4PHV1_9ROSA S-RNase (Fragment) OS=Prunus speciosa GN=... 33 9.3
tr|A0FGT6|A0FGT6_9ROSA S-RNase (Fragment) OS=Prunus webbii GN=S6... 33 9.3
tr|B8PHA2|B8PHA2_9APHY Predicted protein OS=Postia placenta Mad-... 33 9.3

>tr|A1YGP7|A1YGP7_PRUTE S-RNase (Fragment) OS=Prunus tenella GN=S6
PE=3 SV=1
Length = 171

Score = 35.4 bits (80), Expect = 1.4
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = -1

Query: 171 SNTTPHQ-SGAKNKPIIQVLAQVSWPDGERPKSTRHWEEIWRRAEGTLSVK 22
SN T Q G K P ++ ++SWPD E T+ WE W + GT SV+
Sbjct: 50 SNCTGSQFDGRKLYPHMRSKLKISWPDVESGNDTKFWESEWNK-HGTCSVE 99


>tr|A4H3P8|A4H3P8_LEIBR Putative uncharacterized protein
OS=Leishmania braziliensis GN=LbrM03_V2.0770 PE=4 SV=1
Length = 1429

Score = 35.4 bits (80), Expect = 1.4
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -3

Query: 124 TGACTSKLARRREAKIDATLGGDLEKGGGHVER-EGLAADGV 2
+G C+S R + DATLG + ++GG H+ER EG A+ V
Sbjct: 64 SGVCSSTSGNRAQTADDATLGREGQEGGKHIERIEGTASAAV 105


>tr|Q93XH1|Q93XH1_PRUDU Si-RNase (Fragment) OS=Prunus dulcis PE=3
SV=1
Length = 165

Score = 35.0 bits (79), Expect = 1.9
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1

Query: 165 TTPHQSGAKNKPIIQVLAQVSWPDGERPKSTRHWEEIWRRAEGTLS 28
T P K P +++ ++SWPD E TR WE W + GT S
Sbjct: 48 TGPKFDARKVSPKMRIKLKISWPDVESGNDTRFWEGEWNK-HGTCS 92


>tr|Q8W186|Q8W186_PRUDU RNase (Fragment) OS=Prunus dulcis GN=S PE=3
SV=2
Length = 162

Score = 35.0 bits (79), Expect = 1.9
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = -1

Query: 165 TTPHQSGAKNKPIIQVLAQVSWPDGERPKSTRHWEEIWRRAEGTLS 28
T P K P +++ ++SWPD E TR WE W + GT S
Sbjct: 46 TGPKFDARKVSPKMRIKLKISWPDVESGNDTRFWEGEWNK-HGTCS 90


>tr|Q8W187|Q8W187_PRUDU RNase (Fragment) OS=Prunus dulcis GN=S PE=3
SV=1
Length = 162

Score = 33.9 bits (76), Expect = 4.2
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = -1

Query: 141 KNKPIIQVLAQVSWPDGERPKSTRHWEEIWRRAEGTLS 28
K P +Q ++SWPD E TR WE W + GT S
Sbjct: 53 KLSPKLQNKVKISWPDVESGNDTRFWESEWNK-HGTCS 89


>tr|Q1KPK2|Q1KPK2_MOUSE Usherin (Fragment) OS=Mus musculus GN=Ush2a
PE=2 SV=1
Length = 208

Score = 33.5 bits (75), Expect = 5.4
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1

Query: 13 QRALHAQRALRPSPNLLPMSRRFWPLSVWP 102
QR +H + +R P L+P+ +R PLSV+P
Sbjct: 46 QRKIHKEPCIRERPPLVPLQKRMTPLSVYP 75


>tr|A9JN88|A9JN88_9ROSA Self-incompatibility ribonuclease (Fragment)
OS=Prunus cerasifera GN=s PE=3 SV=1
Length = 165

Score = 33.5 bits (75), Expect = 5.4
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Frame = -1

Query: 132 PIIQVLAQVSWPDGERPKSTRHWEEIWRR----AEGTLS 28
P ++ ++SWPD E TR WE W + +EGTL+
Sbjct: 59 PQLRSKMKISWPDVESGNDTRFWESEWNKHGTCSEGTLN 97


>tr|Q3BNK1|Q3BNK1_XANC5 Putative membrane protein OS=Xanthomonas
campestris pv. vesicatoria (strain 85-10) GN=XCV3931
PE=4 SV=1
Length = 423

Score = 33.5 bits (75), Expect = 5.5
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Frame = +3

Query: 6 PSAASPSRSTCPPPFSKS-----PPNV--ASILASLRLANLLVQAPVLSVCFWHRIDEVL 164
PS +PS +T PP ++ + PP A LA+ L APV+ W R+ +
Sbjct: 173 PSPTAPSGTTWPPGYTAAAATTPPPGAWDAPALAAPAADTALQDAPVVYAGLWRRVAASI 232

Query: 165 CSTLPTPFQLFL 200
+L T F ++L
Sbjct: 233 LDSLITTFAVYL 244


>tr|Q9MBD2|Q9MBD2_9ROSA Sa-RNase (Fragment) OS=Prunus salicina PE=2
SV=1
Length = 208

Score = 33.1 bits (74), Expect = 7.1
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1

Query: 171 SNTTPHQSGAKNK-PIIQVLAQVSWPDGERPKSTRHWEEIWRRAEGTLS 28
SN T Q +N P +Q ++SWPD E T+ WE W + GT S
Sbjct: 58 SNCTGSQFKKQNLYPYMQSKLKISWPDVESGNDTKFWEGEWNK-HGTCS 105


>tr|Q8H973|Q8H973_9ROSA Sa-RNase (Fragment) OS=Prunus salicina
GN=PS-Sa PE=3 SV=1
Length = 173

Score = 33.1 bits (74), Expect = 7.1
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = -1

Query: 171 SNTTPHQSGAKNK-PIIQVLAQVSWPDGERPKSTRHWEEIWRRAEGTLS 28
SN T Q +N P +Q ++SWPD E T+ WE W + GT S
Sbjct: 58 SNCTGSQFKKQNLYPYMQSKLKISWPDVESGNDTKFWEGEWNK-HGTCS 105