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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917993
Clone id YMU001_000108_D01
Library
Length 475
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_D01.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CGAAGAGGAAAAGCTATGGGTATGGAGCTATAACGAGACAGATATGTTCATGGATCTGGA
GGAGGAGGTGCGATTTCGGGTCGAGCACGTCAAATACCCGTCAATACCCATTGAGCAAGA
AAGTAATGCCAAACCATTCGCCCCTATGGAGATAAGTGCTCTCATCAATGCAGATGGCTT
AGGACTTGTTTCTTGGTGGAGCTAAAGACGTGCAAATGAGGAAGATTTGCACAGATCTGC
ATATGGTTGGATTGAACAATCACATTTTTCAACAAGGATATATACTTGCCTGGAAGGACA
GCTTTCTCTCAGCCGCGGATGCTTAACAGTCAAGTAGAAATTCATTTATAGGATATTTTT
AGCAGACTGATGAGTGTACTTTTATAAAAATGTTCATGATAGAGAGGATTTTGCCGCGAA
GTATAATCTTTACTCCGTTTATTTTCAAAAAAAAAAAAAATTCGCGGTCGCGAAT
■■Homology search results ■■ -
sp_hit_id Q2T9X1
Definition sp|Q2T9X1|RPC8_BOVIN DNA-directed RNA polymerase III subunit RPC8 OS=Bos taurus
Align length 81
Score (bit) 51.6
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917993|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_D01.
         (446 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2T9X1|RPC8_BOVIN DNA-directed RNA polymerase III subunit RPC...    52   1e-06
sp|Q9D2C6|RPC8_MOUSE DNA-directed RNA polymerase III subunit RPC...    50   6e-06
sp|Q9Y535|RPC8_HUMAN DNA-directed RNA polymerase III subunit RPC...    49   1e-05
sp|O94285|RPC8_SCHPO DNA-directed RNA polymerase III subunit rpc...    47   5e-05
sp|Q557J3|RPC8_DICDI DNA-directed RNA polymerase III subunit rpc...    46   8e-05
sp|P35718|RPC8_YEAST DNA-directed RNA polymerase III subunit RPC...    45   2e-04
sp|Q4WNY4|SWC4_ASPFU SWR1-complex protein 4 OS=Aspergillus fumig...    31   2.1  

>sp|Q2T9X1|RPC8_BOVIN DNA-directed RNA polymerase III subunit RPC8
           OS=Bos taurus GN=POLR3H PE=2 SV=1
          Length = 204

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 30/81 (37%), Positives = 43/81 (53%), Gaps = 14/81 (17%)
 Frame = +2

Query: 2   EEEKLWVWSYNET----DMFMDLEEEVRFRVEHVKY----PSIPIEQESNA------KPF 139
           E E++WVW Y       D++MD+ EEVRFRV    +    P+ P   E+ +      K  
Sbjct: 122 EAEQVWVWEYETEEGAHDLYMDIGEEVRFRVVDESFVDTSPTGPSSAEAASSSEELPKKE 181

Query: 140 APMEISALINADGLGLVSWWS 202
           AP  +   I+  GLGL+SWW+
Sbjct: 182 APYTLMGSISEPGLGLLSWWT 202


>sp|Q9D2C6|RPC8_MOUSE DNA-directed RNA polymerase III subunit RPC8
           OS=Mus musculus GN=Polr3h PE=2 SV=2
          Length = 204

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 29/81 (35%), Positives = 42/81 (51%), Gaps = 14/81 (17%)
 Frame = +2

Query: 2   EEEKLWVWSYNET----DMFMDLEEEVRFRVEHVKY----PSIPIEQESNA------KPF 139
           E E++WVW Y       D++MD  EE+RFRV    +    P+ P   E+ +      K  
Sbjct: 122 EAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSAEAASSSEELPKKE 181

Query: 140 APMEISALINADGLGLVSWWS 202
           AP  +   I+  GLGL+SWW+
Sbjct: 182 APYTLVGSISEPGLGLLSWWT 202


>sp|Q9Y535|RPC8_HUMAN DNA-directed RNA polymerase III subunit RPC8
           OS=Homo sapiens GN=POLR3H PE=1 SV=1
          Length = 204

 Score = 48.9 bits (115), Expect = 1e-05
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 14/81 (17%)
 Frame = +2

Query: 2   EEEKLWVWSYNET----DMFMDLEEEVRFRVEHVKY----PSIPIEQESNA------KPF 139
           E E++WVW Y       D++MD  EE+RFRV    +    P+ P   ++        K  
Sbjct: 122 EAEQVWVWEYETEEGAHDLYMDTGEEIRFRVVDESFVDTSPTGPSSADATTSSEELPKKE 181

Query: 140 APMEISALINADGLGLVSWWS 202
           AP  +   I+  GLGL+SWW+
Sbjct: 182 APYTLVGSISEPGLGLLSWWT 202


>sp|O94285|RPC8_SCHPO DNA-directed RNA polymerase III subunit rpc8
           OS=Schizosaccharomyces pombe GN=rpc25 PE=1 SV=1
          Length = 203

 Score = 46.6 bits (109), Expect = 5e-05
 Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 15/80 (18%)
 Frame = +2

Query: 5   EEKLWVWSYNE------TDMFMDLEEEVRFRVEHVKYPSIPIEQESNA---------KPF 139
           +E+ WVW          T+++ D++EE+RF++E   +  I  ++  NA         +  
Sbjct: 123 DERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESEDFVDISPKRNKNATAITGTEALESV 182

Query: 140 APMEISALINADGLGLVSWW 199
           +P  + A  + DGLG+ +WW
Sbjct: 183 SPYTLIASCSRDGLGIPAWW 202


>sp|Q557J3|RPC8_DICDI DNA-directed RNA polymerase III subunit rpc8
           OS=Dictyostelium discoideum GN=polr3h-1 PE=2 SV=1
          Length = 252

 Score = 45.8 bits (107), Expect = 8e-05
 Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 28/103 (27%)
 Frame = +2

Query: 2   EEEKLWVWSYNETDMFMDLEEEVRFRVEHVKY-PSIP----------------------- 109
           +EE LW W +NE  +F +    VRF+++ V++ P I                        
Sbjct: 121 QEEGLWYWEWNENQLFFEDGGRVRFKIDQVEFNPEISQPAPSPKNVNTEAMDSYSLREYK 180

Query: 110 ---IEQESNAKPF-APMEISALINADGLGLVSWWS*RRANEED 226
              IE E+  K   +P+ +   +   GLG+VSWW+ + A ++D
Sbjct: 181 EKQIENENLLKQVKSPLILKVSMREAGLGMVSWWTNQSAGDDD 223


>sp|P35718|RPC8_YEAST DNA-directed RNA polymerase III subunit RPC8
           OS=Saccharomyces cerevisiae GN=RPC25 PE=1 SV=1
          Length = 212

 Score = 44.7 bits (104), Expect = 2e-04
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 23/88 (26%)
 Frame = +2

Query: 5   EEKLWVWSYNE-TDMFMDLEEEVRFRVEHVKY----PSIPIEQESNAKPFAPMEIS---- 157
           EE  W+W  +E T ++ D+ E++RFR+E   +    P  P E+E   +     EI     
Sbjct: 124 EESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDVKPKSPKERELEERAQLENEIEGKNE 183

Query: 158 -----------ALINA---DGLGLVSWW 199
                      AL+ +   DG+GLVSWW
Sbjct: 184 ETPQNEKPPAYALLGSCQTDGMGLVSWW 211


>sp|Q4WNY4|SWC4_ASPFU SWR1-complex protein 4 OS=Aspergillus
           fumigatus GN=swc4 PE=3 SV=1
          Length = 588

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +2

Query: 23  WSYNETDMFMDLEEEVRFR----VEHVKYPSIPIEQESNAKPFAP 145
           WS  ETD  MDL EE   R     +   +   PI+ E+NA    P
Sbjct: 162 WSRQETDYLMDLVEEYDLRWVVIADRYDFQPQPIDAEANATALVP 206
tr_hit_id A9RCC5
Definition tr|A9RCC5|A9RCC5_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 67
Score (bit) 114.0
E-value 2.0e-24
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917993|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_D01.
         (446 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9RCC5|A9RCC5_PHYPA Predicted protein OS=Physcomitrella paten...   114   2e-24
tr|A7PU53|A7PU53_VITVI Chromosome chr7 scaffold_31, whole genome...    76   9e-13
tr|A7PUL8|A7PUL8_VITVI Chromosome chr7 scaffold_31, whole genome...    75   1e-12
tr|A8IVC2|A8IVC2_CHLRE DNA-directed RNA polymerase II, 19 kDa po...    74   4e-12
tr|Q9M9Y6|Q9M9Y6_ARATH F4H5.12 protein (Putative RNA polymerase)...    74   5e-12
tr|Q84NN3|Q84NN3_ORYSJ Os07g0477000 protein OS=Oryza sativa subs...    70   5e-11
tr|B8B5Z9|B8B5Z9_ORYSI Putative uncharacterized protein OS=Oryza...    70   5e-11
tr|A3BJP8|A3BJP8_ORYSJ Putative uncharacterized protein OS=Oryza...    70   5e-11
tr|B6ST98|B6ST98_MAIZE DNA-directed RNA polymerase III subunit 2...    69   9e-11
tr|Q017Z0|Q017Z0_OSTTA KIAA1665 protein (ISS) OS=Ostreococcus ta...    62   1e-08
tr|A4RY95|A4RY95_OSTLU Predicted protein OS=Ostreococcus lucimar...    59   1e-07
tr|B3RNB8|B3RNB8_TRIAD Putative uncharacterized protein OS=Trich...    57   3e-07
tr|Q3EDH4|Q3EDH4_ARATH Uncharacterized protein At1g06790.2 OS=Ar...    56   1e-06
tr|B6LAB8|B6LAB8_BRAFL Putative uncharacterized protein OS=Branc...    54   5e-06
tr|B6P9Y7|B6P9Y7_BRAFL Putative uncharacterized protein OS=Branc...    53   7e-06
tr|Q5A298|Q5A298_CANAL Putative uncharacterized protein RPC25 OS...    53   9e-06
tr|B6QM87|B6QM87_PENMA DNA-directed RNA polymerase III subunit 2...    53   9e-06
tr|A5DQH5|A5DQH5_PICGU Putative uncharacterized protein OS=Pichi...    53   9e-06
tr|B8C6I1|B8C6I1_THAPS RPC25,-like protein to dna-directed RNA p...    52   1e-05
tr|B7PY81|B7PY81_IXOSC DNA-directed RNA polymerase subunit E', p...    52   1e-05
tr|Q7PZW7|Q7PZW7_ANOGA AGAP012122-PA OS=Anopheles gambiae GN=AGA...    52   2e-05
tr|A3GFY9|A3GFY9_PICST Subunit of RNA polymerase III OS=Pichia s...    52   2e-05
tr|B5X9W8|B5X9W8_SALSA DNA-directed RNA polymerase III subunit R...    51   2e-05
tr|A7SDD0|A7SDD0_NEMVE Predicted protein OS=Nematostella vectens...    51   2e-05
tr|Q16NU0|Q16NU0_AEDAE DNA-directed RNA polymerase III 25 kDa po...    51   3e-05
tr|Q6BQ87|Q6BQ87_DEBHA DEHA2E07414p OS=Debaryomyces hansenii GN=...    51   3e-05
tr|B2RZB0|B2RZB0_RAT Polr3h protein (Polymerase (RNA) III (DNA d...    50   7e-05
tr|Q3U7U0|Q3U7U0_MOUSE Putative uncharacterized protein OS=Mus m...    49   9e-05
tr|Q6C9G5|Q6C9G5_YARLI YALI0D11396p OS=Yarrowia lipolytica GN=YA...    49   9e-05
tr|B0QYH9|B0QYH9_HUMAN Polymerase (RNA) III (DNA directed) polyp...    49   1e-04

>tr|A9RCC5|A9RCC5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_111630 PE=4 SV=1
          Length = 189

 Score =  114 bits (286), Expect = 2e-24
 Identities = 51/67 (76%), Positives = 58/67 (86%)
 Frame = +2

Query: 2   EEEKLWVWSYNETDMFMDLEEEVRFRVEHVKYPSIPIEQESNAKPFAPMEISALINADGL 181
           EEEKLW+W+YN  DMFMDLEE+VRFRV  VKYP IPIEQE +A+PFAPM I+  INADGL
Sbjct: 123 EEEKLWIWNYNGADMFMDLEEDVRFRVVQVKYPPIPIEQEKDARPFAPMAITGDINADGL 182

Query: 182 GLVSWWS 202
           GLV+WWS
Sbjct: 183 GLVAWWS 189


>tr|A7PU53|A7PU53_VITVI Chromosome chr7 scaffold_31, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023660001
           PE=4 SV=1
          Length = 192

 Score = 75.9 bits (185), Expect = 9e-13
 Identities = 31/66 (46%), Positives = 44/66 (66%)
 Frame = +2

Query: 2   EEEKLWVWSYNETDMFMDLEEEVRFRVEHVKYPSIPIEQESNAKPFAPMEISALINADGL 181
           + + +W+W Y E    +D  +E+RF+V+ V YP IP+EQ   +KPFAPM I   ++ DGL
Sbjct: 127 KSQVIWIWDYQEQKFPIDGLDEIRFQVQSVSYPPIPVEQPKESKPFAPMMIMGSLDYDGL 186

Query: 182 GLVSWW 199
           G VSWW
Sbjct: 187 GPVSWW 192


>tr|A7PUL8|A7PUL8_VITVI Chromosome chr7 scaffold_31, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023849001
           PE=4 SV=1
          Length = 192

 Score = 75.5 bits (184), Expect = 1e-12
 Identities = 31/62 (50%), Positives = 42/62 (67%)
 Frame = +2

Query: 14  LWVWSYNETDMFMDLEEEVRFRVEHVKYPSIPIEQESNAKPFAPMEISALINADGLGLVS 193
           +W+W Y E    +D  +E+RF+V+ V YP IP+EQ   +KPFAPM I   ++ DGLG VS
Sbjct: 131 IWIWDYQEQKFPIDGIDEIRFQVQSVSYPPIPVEQPKESKPFAPMVIMGSLDYDGLGPVS 190

Query: 194 WW 199
           WW
Sbjct: 191 WW 192


>tr|A8IVC2|A8IVC2_CHLRE DNA-directed RNA polymerase II, 19 kDa
           polypeptide OS=Chlamydomonas reinhardtii GN=RPB7B PE=4
           SV=1
          Length = 201

 Score = 73.9 bits (180), Expect = 4e-12
 Identities = 36/79 (45%), Positives = 48/79 (60%), Gaps = 12/79 (15%)
 Frame = +2

Query: 2   EEEKLWVWSYNETDMFMDLEEEVRFRVEHVKY--PSIPIEQE----------SNAKPFAP 145
           E E+LWVW ++  DM+MDL+E +RFRV  VK+  P  PI+            + AKPF+P
Sbjct: 122 EAERLWVWKFDGNDMYMDLQEPIRFRVHSVKFNSPPTPIQLANATGDDKLLGTAAKPFSP 181

Query: 146 MEISALINADGLGLVSWWS 202
           M +   IN DGLG  SWW+
Sbjct: 182 MVVVGDINGDGLGCTSWWA 200


>tr|Q9M9Y6|Q9M9Y6_ARATH F4H5.12 protein (Putative RNA polymerase)
           OS=Arabidopsis thaliana GN=At1g06790 PE=2 SV=1
          Length = 204

 Score = 73.6 bits (179), Expect = 5e-12
 Identities = 31/67 (46%), Positives = 46/67 (68%), Gaps = 2/67 (2%)
 Frame = +2

Query: 5   EEKLWVWSYNET--DMFMDLEEEVRFRVEHVKYPSIPIEQESNAKPFAPMEISALINADG 178
           ++ +WVW Y E   D  +D   +++FRVE + YPS+P E+  +AKPFAPM ++  ++ DG
Sbjct: 128 KQMIWVWEYGEPKEDYIVDDACQIKFRVESISYPSVPTERAEDAKPFAPMVVTGNMDDDG 187

Query: 179 LGLVSWW 199
           LG VSWW
Sbjct: 188 LGPVSWW 194


>tr|Q84NN3|Q84NN3_ORYSJ Os07g0477000 protein OS=Oryza sativa subsp.
           japonica GN=P0640E12.113 PE=2 SV=1
          Length = 202

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 29/62 (46%), Positives = 46/62 (74%)
 Frame = +2

Query: 41  DMFMDLEEEVRFRVEHVKYPSIPIEQESNAKPFAPMEISALINADGLGLVSWWS*RRANE 220
           ++++DL++E+RF V  +KYP IP+EQ+   + FAPM+I   I  DGLGL++WW+   A+E
Sbjct: 135 ELYLDLDDEIRFLVSSIKYPPIPVEQKETDRAFAPMQIIGSIKGDGLGLLAWWA---ADE 191

Query: 221 ED 226
           E+
Sbjct: 192 EE 193


>tr|B8B5Z9|B8B5Z9_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25976 PE=4 SV=1
          Length = 202

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 29/62 (46%), Positives = 46/62 (74%)
 Frame = +2

Query: 41  DMFMDLEEEVRFRVEHVKYPSIPIEQESNAKPFAPMEISALINADGLGLVSWWS*RRANE 220
           ++++DL++E+RF V  +KYP IP+EQ+   + FAPM+I   I  DGLGL++WW+   A+E
Sbjct: 135 ELYLDLDDEIRFLVSSIKYPPIPVEQKETDRAFAPMQIIGSIKGDGLGLLAWWA---ADE 191

Query: 221 ED 226
           E+
Sbjct: 192 EE 193


>tr|A3BJP8|A3BJP8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_023270 PE=3 SV=1
          Length = 400

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 29/62 (46%), Positives = 46/62 (74%)
 Frame = +2

Query: 41  DMFMDLEEEVRFRVEHVKYPSIPIEQESNAKPFAPMEISALINADGLGLVSWWS*RRANE 220
           ++++DL++E+RF V  +KYP IP+EQ+   + FAPM+I   I  DGLGL++WW+   A+E
Sbjct: 333 ELYLDLDDEIRFLVSSIKYPPIPVEQKETDRAFAPMQIIGSIKGDGLGLLAWWA---ADE 389

Query: 221 ED 226
           E+
Sbjct: 390 EE 391


>tr|B6ST98|B6ST98_MAIZE DNA-directed RNA polymerase III subunit 22.9
           kDa polypeptide OS=Zea mays PE=2 SV=1
          Length = 202

 Score = 69.3 bits (168), Expect = 9e-11
 Identities = 31/67 (46%), Positives = 46/67 (68%)
 Frame = +2

Query: 41  DMFMDLEEEVRFRVEHVKYPSIPIEQESNAKPFAPMEISALINADGLGLVSWWS*RRANE 220
           ++++DL++E+RF V   KYP IPI+Q  +  PFAPM+I   I  DGLGL+ WW+   A+E
Sbjct: 135 ELYLDLDDEIRFLVSSTKYPPIPIDQNEDDPPFAPMQIVGSIKGDGLGLLVWWA---ADE 191

Query: 221 EDLHRSA 241
           E+   +A
Sbjct: 192 EEGEEAA 198


>tr|Q017Z0|Q017Z0_OSTTA KIAA1665 protein (ISS) OS=Ostreococcus tauri
           GN=Ot06g00120 PE=4 SV=1
          Length = 213

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 31/77 (40%), Positives = 45/77 (58%), Gaps = 11/77 (14%)
 Frame = +2

Query: 2   EEEKLWVWSYNETDMFMDLEEEVRFRVEHVKYPSIP--------IEQESNAK---PFAPM 148
           E+EK W+W YN   + +++ E+VRFRV   ++P  P        +  +S AK    FAPM
Sbjct: 132 EDEKAWIWDYNGERIKLEVGEKVRFRVVGSRFPDSPKTAEELASLTADSGAKANGSFAPM 191

Query: 149 EISALINADGLGLVSWW 199
            +   +NADGLG+ SWW
Sbjct: 192 LVVGDLNADGLGMCSWW 208