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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP917994
Clone id YMU001_000108_D02
Library
Length 453
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_D02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TGATGGAGCCACATTGCACGCATCGACTATACTCAACAAGACCGTGCGAGAAAGTCTAGC
TAAAGAAAGCCATGTCTACACGGAGGAATCTGCGCGGTTCCTTTACGGCCATGGAAGAAG
TGCAAATGCTCATTAAGGGGTCTGCAGTTGCATAGGGTCAGCAAGGCTCCTATAGATGCG
GCTTCAAGCCAGCAAAGTGTACATGTCCATACAAGAGGGCTACCCTCAACTTCTCAGAGA
TCCCCATACTTCCCATTACTCTCTCCACACATTTTCATCAACTTTTGAATGTGCCTCAAT
ATACTTTTGTATCACATCCACTTTGGAGACTCTCCACTTTTGAGGAGTTTTACATAGTTG
AAAAACTTAGGACAAAGAGGTCTTCTCAAACCATATACTTATGACATATCCAAAGTGTTG
TGATGACTTCCTCTCCTCCATCCTCCTCCTACC
■■Homology search results ■■ -
sp_hit_id P33450
Definition sp|P33450|FAT_DROME Cadherin-related tumor suppressor OS=Drosophila melanogaster
Align length 21
Score (bit) 33.5
E-value 0.44
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917994|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_D02.
         (453 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P33450|FAT_DROME Cadherin-related tumor suppressor OS=Drosoph...    33   0.44 
sp|Q9UM47|NOTC3_HUMAN Neurogenic locus notch homolog protein 3 O...    31   2.2  
sp|P48626|FAD3E_TOBAC Omega-3 fatty acid desaturase, endoplasmic...    30   3.7  
sp|Q61982|NOTC3_MOUSE Neurogenic locus notch homolog protein 3 O...    30   3.8  
sp|Q2PZL6|FAT4_MOUSE Protocadherin Fat 4 OS=Mus musculus GN=Fat4...    30   4.9  
sp|B1JDH3|MLTF_PSEPW Membrane-bound lytic murein transglycosylas...    30   6.3  
sp|A5UJ23|CCA_HAEIG Multifunctional CCA protein OS=Haemophilus i...    30   6.3  
sp|Q39192|SRK2D_ARATH Serine/threonine-protein kinase SRK2D OS=A...    30   6.4  
sp|Q05192|FTF1B_DROME Nuclear hormone receptor FTZ-F1 beta OS=Dr...    30   6.4  
sp|Q9FJW6|PP451_ARATH Pentatricopeptide repeat-containing protei...    29   8.2  
sp|Q6NSW3|SPKAP_MOUSE A-kinase anchor protein SPHKAP OS=Mus musc...    29   8.4  

>sp|P33450|FAT_DROME Cadherin-related tumor suppressor OS=Drosophila
            melanogaster GN=ft PE=1 SV=3
          Length = 5147

 Score = 33.5 bits (75), Expect = 0.44
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +1

Query: 70   PCLHGGICAVPLRPWKKCKCS 132
            PCLHGG+C V L+P  KC C+
Sbjct: 4100 PCLHGGLC-VSLKPGYKCNCT 4119


>sp|Q9UM47|NOTC3_HUMAN Neurogenic locus notch homolog protein 3
            OS=Homo sapiens GN=NOTCH3 PE=1 SV=1
          Length = 2321

 Score = 31.2 bits (69), Expect = 2.2
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 70   PCLHGGIC-AVPLRPWKKCKCS 132
            PCLHGG C   PL P+ +C C+
Sbjct: 1343 PCLHGGSCRPAPLAPFFRCACA 1364


>sp|P48626|FAD3E_TOBAC Omega-3 fatty acid desaturase, endoplasmic
           reticulum OS=Nicotiana tabacum GN=FAD3 PE=2 SV=1
          Length = 379

 Score = 30.4 bits (67), Expect = 3.7
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
 Frame = -2

Query: 380 PLCPKFFNYVKLLKSGESPKWM*YK---SILRHIQKLMKMCGESNGK----YGDL*EVEG 222
           P+  K +N     K G S K++ YK    +L +   LMK     +G     Y DL +   
Sbjct: 151 PMPEKLYN-----KVGYSTKFLRYKIPFPLLAYPMYLMKRSPGKSGSHFNPYSDLFQPHE 205

Query: 221 SPLVWTCTLCWLEAASIGALLTLC 150
              V T TLCW   A++  LL LC
Sbjct: 206 RKYVVTSTLCWTVMAAL--LLYLC 227


>sp|Q61982|NOTC3_MOUSE Neurogenic locus notch homolog protein 3 OS=Mus
            musculus GN=Notch3 PE=1 SV=1
          Length = 2318

 Score = 30.4 bits (67), Expect = 3.8
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +1

Query: 67   KPCLHGGICAVPLRPWKKCKC 129
            +PCLHGGIC  P  P  +C C
Sbjct: 970  RPCLHGGICN-PTHPGFECTC 989


>sp|Q2PZL6|FAT4_MOUSE Protocadherin Fat 4 OS=Mus musculus GN=Fat4 PE=1
            SV=1
          Length = 4981

 Score = 30.0 bits (66), Expect = 4.9
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 64   RKPCLHGGICAVPLRPWKKCKC 129
            R PC HGG C V    W++C+C
Sbjct: 4170 RNPCQHGGTC-VDFWSWQQCQC 4190


>sp|B1JDH3|MLTF_PSEPW Membrane-bound lytic murein transglycosylase F
           OS=Pseudomonas putida (strain W619) GN=mltF PE=3 SV=1
          Length = 485

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +2

Query: 5   GATLHASTILNKTVRESLAKESHVYTEESARFLYGHGRS 121
           G  L A+ ++N   R++ A+ SH Y E + + +Y +GRS
Sbjct: 100 GPVLAAAGLVNSERRKTQARFSHPYLEVTPQVIYRNGRS 138


>sp|A5UJ23|CCA_HAEIG Multifunctional CCA protein OS=Haemophilus
           influenzae (strain PittGG) GN=cca PE=3 SV=1
          Length = 416

 Score = 29.6 bits (65), Expect = 6.3
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 5/67 (7%)
 Frame = +3

Query: 165 GSYRCGFKPAKCTCPYKRATLNFSEIPILPITLSTHFHQLLNVPQYTFVS----HPLWRL 332
           G  + G KP +  C   +    F E+  L     TH H+   +   T ++      +WR 
Sbjct: 278 GHEQAGIKPTRSLCKRLKVPSYFQELAELTCEFHTHIHKAFELRAETVITLFNRFDVWRK 337

Query: 333 S-TFEEF 350
           S  F+EF
Sbjct: 338 SQRFQEF 344


>sp|Q39192|SRK2D_ARATH Serine/threonine-protein kinase SRK2D
           OS=Arabidopsis thaliana GN=SRK2D PE=1 SV=1
          Length = 362

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 15/25 (60%), Positives = 17/25 (68%)
 Frame = -1

Query: 333 RVSKVDVIQKYIEAHSKVDENVWRE 259
           RV+K  V  KYIE   K+DENV RE
Sbjct: 43  RVTKELVAVKYIERGEKIDENVQRE 67


>sp|Q05192|FTF1B_DROME Nuclear hormone receptor FTZ-F1 beta
           OS=Drosophila melanogaster GN=Hr39 PE=1 SV=3
          Length = 808

 Score = 29.6 bits (65), Expect = 6.4
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = +1

Query: 73  CLHGGICAVPLRPWKKC------KCSLRGLQLHRVSKAPIDAASSQQSVHVHTRGLPSTS 234
           C+ GG C V +   KKC      KC  +G++L  + +   D     +S +  +  LP+  
Sbjct: 412 CVRGGPCQVSISTRKKCPACRFEKCLQKGMKLEAIRE---DRTRGGRSTYQCSYTLPN-- 466

Query: 235 QRSPYFPLLSP 267
             S   PLLSP
Sbjct: 467 --SMLSPLLSP 475


>sp|Q9FJW6|PP451_ARATH Pentatricopeptide repeat-containing protein
           At5g67570, chloroplastic OS=Arabidopsis thaliana GN=DG1
           PE=2 SV=2
          Length = 798

 Score = 29.3 bits (64), Expect = 8.2
 Identities = 27/82 (32%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
 Frame = -2

Query: 350 KLLKSGESPKWM*YKSILRHIQKLMKMCGESNGKYGDL*E--VEGSPLVW---TCTLC-- 192
           K+  SGE+PK + YK ++R + +  K+  E+     D+ +  V G+  V+    C LC  
Sbjct: 401 KMKSSGEAPKAITYKVLVRALWREGKI-EEAVEAVRDMEQKGVIGTGSVYYELACCLCNN 459

Query: 191 --WLEA-ASIGALLTLCNCRPL 135
             W +A   +G +  L NCRPL
Sbjct: 460 GRWCDAMLEVGRMKRLENCRPL 481
tr_hit_id Q76JP8
Definition tr|Q76JP8|Q76JP8_CRYJA Putative spermine synthase (Fragment) OS=Cryptomeria japonica
Align length 41
Score (bit) 57.4
E-value 4.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP917994|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_D02.
         (453 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q76JP8|Q76JP8_CRYJA Putative spermine synthase (Fragment) OS=...    57   4e-07
tr|Q76IR3|Q76IR3_TAXDI Putative spermine synthase (Fragment) OS=...    57   4e-07
tr|Q6EQJ6|Q6EQJ6_ORYSJ Os02g0237100 protein OS=Oryza sativa subs...    57   6e-07
tr|A9S7S6|A9S7S6_PHYPA Predicted protein OS=Physcomitrella paten...    57   6e-07
tr|A2X2T3|A2X2T3_ORYSI Putative uncharacterized protein OS=Oryza...    57   6e-07
tr|A9TPB8|A9TPB8_PHYPA Predicted protein OS=Physcomitrella paten...    56   1e-06
tr|A9S1K9|A9S1K9_PHYPA Predicted protein OS=Physcomitrella paten...    56   1e-06
tr|B7FII8|B7FII8_MEDTR Putative uncharacterized protein OS=Medic...    55   1e-06
tr|Q70AG5|Q70AG5_SOLLC Putative spermine synthase OS=Solanum lyc...    54   5e-06
tr|A9PCB6|A9PCB6_POPTR Putative uncharacterized protein OS=Popul...    51   3e-05
tr|A7P4S1|A7P4S1_VITVI Chromosome chr4 scaffold_6, whole genome ...    49   1e-04
tr|Q4ADY4|Q4ADY4_9ROSA ACAULIS5 protein OS=Malus sylvestris GN=A...    49   1e-04
tr|A7NWL1|A7NWL1_VITVI Chromosome chr5 scaffold_2, whole genome ...    47   4e-04
tr|Q4ADY3|Q4ADY3_9ROSA ACAULIS5 protein OS=Malus sylvestris GN=A...    46   0.001
tr|A9T031|A9T031_PHYPA Predicted protein OS=Physcomitrella paten...    44   0.004
tr|Q9S7X6|Q9S7X6_ARATH Spermine synthase (At5g19530/T20D1_50) (A...    42   0.015
tr|Q8W3K9|Q8W3K9_ARATH Spermine synthase OS=Arabidopsis thaliana...    42   0.015
tr|Q8W3K8|Q8W3K8_ARATH Spermine synthase OS=Arabidopsis thaliana...    42   0.015
tr|Q8W3K7|Q8W3K7_ARATH Spermine synthase OS=Arabidopsis thaliana...    42   0.015
tr|Q8W3K6|Q8W3K6_ARAGE Spermine synthase OS=Arabis gemmifera GN=...    42   0.015
tr|Q8VWK6|Q8VWK6_ARATH Spermine synthase OS=Arabidopsis thaliana...    42   0.015
tr|A8MSC8|A8MSC8_ARATH Uncharacterized protein At5g19530.2 OS=Ar...    42   0.015
tr|A8HYM8|A8HYM8_CHLRE Spermine synthase OS=Chlamydomonas reinha...    40   0.058
tr|B0WKU3|B0WKU3_CULQU Neprilysin OS=Culex quinquefasciatus GN=C...    35   1.4  
tr|B0WKU2|B0WKU2_CULQU Neprilysin OS=Culex quinquefasciatus GN=C...    35   1.4  
tr|B3MLP3|B3MLP3_DROAN GF15021 OS=Drosophila ananassae GN=GF1502...    35   2.4  
tr|B4N0N1|B4N0N1_DROWI GK24450 OS=Drosophila willistoni GN=GK244...    34   3.2  
tr|B5TRC1|B5TRC1_9CAUD Hypothetical phage protein OS=Bacteroides...    34   4.2  
tr|Q7PY82|Q7PY82_ANOGA AGAP001791-PA (Fragment) OS=Anopheles gam...    34   4.2  
tr|Q16UJ2|Q16UJ2_AEDAE Neprilysin (Fragment) OS=Aedes aegypti GN...    34   4.2  

>tr|Q76JP8|Q76JP8_CRYJA Putative spermine synthase (Fragment)
           OS=Cryptomeria japonica GN=Acl5 PE=4 SV=1
          Length = 380

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 24/41 (58%), Positives = 35/41 (85%)
 Frame = +2

Query: 2   DGATLHASTILNKTVRESLAKESHVYTEESARFLYGHGRSA 124
           DG T   +  LNK+VR+SL+KE+HVYTEE+ARF++GHG+++
Sbjct: 338 DGQTFLVAATLNKSVRKSLSKETHVYTEETARFIHGHGKAS 378


>tr|Q76IR3|Q76IR3_TAXDI Putative spermine synthase (Fragment)
           OS=Taxodium distichum GN=Acl5 PE=4 SV=1
          Length = 378

 Score = 57.4 bits (137), Expect = 4e-07
 Identities = 24/41 (58%), Positives = 35/41 (85%)
 Frame = +2

Query: 2   DGATLHASTILNKTVRESLAKESHVYTEESARFLYGHGRSA 124
           DG T   +  LNK+VR+SL+KE+HVYTEE+ARF++GHG+++
Sbjct: 336 DGQTFLVAATLNKSVRKSLSKETHVYTEETARFIHGHGKAS 376


>tr|Q6EQJ6|Q6EQJ6_ORYSJ Os02g0237100 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0006L10.5 PE=4 SV=1
          Length = 344

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 25/39 (64%), Positives = 33/39 (84%)
 Frame = +2

Query: 5   GATLHASTILNKTVRESLAKESHVYTEESARFLYGHGRS 121
           G +L +STILNK+V +SL  E+HVYTE+ ARF+YGHGR+
Sbjct: 303 GESLISSTILNKSVYQSLLNETHVYTEDDARFIYGHGRA 341


>tr|A9S7S6|A9S7S6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_209521 PE=4 SV=1
          Length = 343

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 27/38 (71%), Positives = 30/38 (78%)
 Frame = +2

Query: 2   DGATLHASTILNKTVRESLAKESHVYTEESARFLYGHG 115
           DG  L AS  LNK VR+SLA E HVYTEESARF++GHG
Sbjct: 301 DGEALFASIALNKHVRKSLAAERHVYTEESARFIHGHG 338


>tr|A2X2T3|A2X2T3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_06498 PE=4 SV=1
          Length = 344

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 25/39 (64%), Positives = 33/39 (84%)
 Frame = +2

Query: 5   GATLHASTILNKTVRESLAKESHVYTEESARFLYGHGRS 121
           G +L +STILNK+V +SL  E+HVYTE+ ARF+YGHGR+
Sbjct: 303 GESLISSTILNKSVYQSLLNETHVYTEDDARFIYGHGRA 341


>tr|A9TPB8|A9TPB8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_224154 PE=4 SV=1
          Length = 355

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 26/41 (63%), Positives = 32/41 (78%)
 Frame = +2

Query: 2   DGATLHASTILNKTVRESLAKESHVYTEESARFLYGHGRSA 124
           DG TL A+  LNK VR SLA E HVYTEE+ARF++GHG ++
Sbjct: 313 DGQTLSATHALNKHVRNSLAAERHVYTEETARFIHGHGTAS 353


>tr|A9S1K9|A9S1K9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_180252 PE=4 SV=1
          Length = 355

 Score = 55.8 bits (133), Expect = 1e-06
 Identities = 26/38 (68%), Positives = 30/38 (78%)
 Frame = +2

Query: 2   DGATLHASTILNKTVRESLAKESHVYTEESARFLYGHG 115
           DG TL A+  LNK VR SLA E HVYTEE+ARF++GHG
Sbjct: 313 DGQTLSAAIALNKHVRRSLAAERHVYTEETARFIHGHG 350


>tr|B7FII8|B7FII8_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 347

 Score = 55.5 bits (132), Expect = 1e-06
 Identities = 24/38 (63%), Positives = 31/38 (81%)
 Frame = +2

Query: 2   DGATLHASTILNKTVRESLAKESHVYTEESARFLYGHG 115
           DGA  H+STI+NK V +SL  E+HVYTE++ARF+ GHG
Sbjct: 305 DGAWFHSSTIMNKAVSKSLKNETHVYTEDNARFIPGHG 342


>tr|Q70AG5|Q70AG5_SOLLC Putative spermine synthase OS=Solanum
           lycopersicum GN=spe4 PE=2 SV=1
          Length = 349

 Score = 53.5 bits (127), Expect = 5e-06
 Identities = 23/38 (60%), Positives = 31/38 (81%)
 Frame = +2

Query: 2   DGATLHASTILNKTVRESLAKESHVYTEESARFLYGHG 115
           +GA+  +STILNKTV ++L  ESHVY E+ ARF++GHG
Sbjct: 307 NGASFFSSTILNKTVAKTLKNESHVYAEDDARFIHGHG 344


>tr|A9PCB6|A9PCB6_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 338

 Score = 51.2 bits (121), Expect = 3e-05
 Identities = 22/38 (57%), Positives = 30/38 (78%)
 Frame = +2

Query: 2   DGATLHASTILNKTVRESLAKESHVYTEESARFLYGHG 115
           DG T  +++ L+K VR+SL  E+HVYTE +ARF+YGHG
Sbjct: 293 DGKTFSSASTLSKAVRKSLDNETHVYTEGTARFIYGHG 330