BP917996
Clone id YMU001_000108_D04
Library
Length 338
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_D04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
ACGGGCACACGGAGGATTATAATGGACTTTGGCGGCGTAACAACGCGGGCCGGTGCTTTG
AGAGTGATGCTAAGATTGCAGGTAATTACAAGTGGTTGGATGTCATAGAGAAAGCAGTAA
TGGAGTTCAACAAGAGAGGGCACTACATAAGCTTGAGGAATCAAACTCCCATTATAAGGA
AGGTGAATGACAATAGTGAGGATTTGGCAATATTGCAGAGGGAGATGGTCAGAAAGGGCA
TAGGAAACCATTACATTTTCCAGTGCAGGGATGTACAAGGGAAGAGAGAGTCTGCGGTGC
CGGTGGAGGAGTCGTGGCGACTATTCGCGAATTCACAG
■■Homology search results ■■ -
sp_hit_id O67554
Definition sp|O67554|Y1632_AQUAE Uncharacterized kamA family protein aq_1632 OS=Aquifex aeolicus
Align length 68
Score (bit) 52.4
E-value 7.0e-07
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917996|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_D04.
(338 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O67554|Y1632_AQUAE Uncharacterized kamA family protein aq_163... 52 7e-07
sp|O66761|Y454_AQUAE Uncharacterized kamA family protein aq_454 ... 38 0.018
sp|P39280|YJEK_ECOLI Uncharacterized kamA family protein yjeK OS... 35 0.089
sp|P44641|Y329_HAEIN Uncharacterized kamA family protein HI0329 ... 33 0.34
sp|O83158|Y121_TREPA Uncharacterized kamA family protein TP_0121... 31 1.7
sp|Q5KWK4|HEM1_GEOKA Glutamyl-tRNA reductase OS=Geobacillus kaus... 30 2.9
sp|P19487|GUNA_XANCP Major extracellular endoglucanase OS=Xantho... 30 3.8
sp|Q9XBQ8|KAMA_CLOSU L-lysine 2,3-aminomutase OS=Clostridium sub... 30 4.9
sp|Q3U2K0|K1931_MOUSE Uncharacterized protein KIAA1931 OS=Mus mu... 30 4.9
sp|P22184|ASF2_HELAN Anther-specific protein SF2 OS=Helianthus a... 30 4.9
sp|Q55C09|SGMA_DICDI Sphingomyelin phosphodiesterase A OS=Dictyo... 29 6.4
sp|Q96PV7|K1931_HUMAN Uncharacterized protein KIAA1931 OS=Homo s... 29 8.4
sp|A7MB40|K1931_BOVIN Uncharacterized protein KIAA1931 ortholog ... 29 8.4

>sp|O67554|Y1632_AQUAE Uncharacterized kamA family protein aq_1632
OS=Aquifex aeolicus GN=aq_1632 PE=3 SV=1
Length = 374

Score = 52.4 bits (124), Expect = 7e-07
Identities = 27/68 (39%), Positives = 40/68 (58%)
Frame = +3

Query: 111 KAVMEFNKRGHYISLRNQTPIIRKVNDNSEDLAILQREMVRKGIGNHYIFQCRDVQGKRE 290
KAV K G +L NQTPI++ +ND+ E L L E+ G+ +Y+FQCR G +
Sbjct: 224 KAVELVQKTG--TTLTNQTPILKGINDDFETLKTLLEELSFIGVPPYYVFQCRPTAGNKA 281

Query: 291 SAVPVEES 314
+ P+EE+
Sbjct: 282 YSTPIEET 289


>sp|O66761|Y454_AQUAE Uncharacterized kamA family protein aq_454
OS=Aquifex aeolicus GN=aq_454 PE=3 SV=1
Length = 370

Score = 37.7 bits (86), Expect = 0.018
Identities = 20/58 (34%), Positives = 35/58 (60%)
Frame = +3

Query: 108 EKAVMEFNKRGHYISLRNQTPIIRKVNDNSEDLAILQREMVRKGIGNHYIFQCRDVQG 281
E+AV +RG I + NQT +++ VND+ E + L R+++R + Y+F C ++G
Sbjct: 239 EEAVDRLLRRG--IPVNNQTVLLKGVNDDPEVMLKLFRKLLRIKVKPQYLFHCDPIKG 294


>sp|P39280|YJEK_ECOLI Uncharacterized kamA family protein yjeK
OS=Escherichia coli (strain K12) GN=yjeK PE=3 SV=1
Length = 342

Score = 35.4 bits (80), Expect = 0.089
Identities = 18/56 (32%), Positives = 31/56 (55%)
Frame = +3

Query: 147 ISLRNQTPIIRKVNDNSEDLAILQREMVRKGIGNHYIFQCRDVQGKRESAVPVEES 314
++L NQ+ ++R VNDN++ LA L + G+ +Y+ VQG V +E+
Sbjct: 248 VTLLNQSVLLRDVNDNAQTLANLSNALFDAGVMPYYLHVLDKVQGAAHFMVSDDEA 303


>sp|P44641|Y329_HAEIN Uncharacterized kamA family protein HI0329
OS=Haemophilus influenzae GN=HI0329 PE=3 SV=1
Length = 338

Score = 33.5 bits (75), Expect = 0.34
Identities = 17/64 (26%), Positives = 36/64 (56%)
Frame = +3

Query: 147 ISLRNQTPIIRKVNDNSEDLAILQREMVRKGIGNHYIFQCRDVQGKRESAVPVEESWRLF 326
++L NQ+ +++ VND+++ L IL ++ + GI +Y+ VQG + E+ +++
Sbjct: 249 VTLLNQSVLLKGVNDDAQILKILSDKLFQTGILPYYLHLLDKVQGASHFLISDIEAMQIY 308

Query: 327 ANSQ 338
Q
Sbjct: 309 KTLQ 312


>sp|O83158|Y121_TREPA Uncharacterized kamA family protein TP_0121
OS=Treponema pallidum GN=TP_0121 PE=1 SV=1
Length = 355

Score = 31.2 bits (69), Expect = 1.7
Identities = 18/64 (28%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +3

Query: 138 GHYISLRNQTPIIRKVNDNSEDLAILQREMVRKGIGNHYIFQCRDVQGKRESAVPVEES- 314
G + +++Q+ ++R VND+ E L L + G+ Y+FQ G + VP+ ++
Sbjct: 233 GAGLPVQSQSVLLRGVNDSVETLCTLFHALTCLGVKPGYLFQLDLAPGTGDFRVPLSDTL 292

Query: 315 --WR 320
WR
Sbjct: 293 ALWR 296


>sp|Q5KWK4|HEM1_GEOKA Glutamyl-tRNA reductase OS=Geobacillus
kaustophilus GN=hemA PE=3 SV=1
Length = 454

Score = 30.4 bits (67), Expect = 2.9
Identities = 17/37 (45%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -1

Query: 140 PSLVELHYCFLYDIQPL--VITCNLSITLKAPARVVT 36
P+L +L FLYDI L V+ NL+ KA AR+ T
Sbjct: 287 PALADLETVFLYDIDDLQDVVAANLAERQKAAARIET 323


>sp|P19487|GUNA_XANCP Major extracellular endoglucanase
OS=Xanthomonas campestris pv. campestris GN=engXCA PE=1
SV=2
Length = 484

Score = 30.0 bits (66), Expect = 3.8
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3

Query: 96 LDVIEKAVMEFNKRGHYISLRNQTP 170
L +++K + EFN RG Y+ L + TP
Sbjct: 114 LQILDKVIAEFNARGMYVLLDHHTP 138


>sp|Q9XBQ8|KAMA_CLOSU L-lysine 2,3-aminomutase OS=Clostridium
subterminale GN=kamA PE=1 SV=1
Length = 416

Score = 29.6 bits (65), Expect = 4.9
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +3

Query: 147 ISLRNQTPIIRKVNDNSEDLAILQREMVRKGIGNHYIFQCRDVQGKRESAVPVEE 311
+ L NQ+ ++R VND + L ++V+ + +YI+QC G PV +
Sbjct: 253 VPLGNQSVLLRGVNDCVHVMKELVNKLVKIRVRPYYIYQCDLSLGLEHFRTPVSK 307


>sp|Q3U2K0|K1931_MOUSE Uncharacterized protein KIAA1931 OS=Mus
musculus GN=Kiaa1931 PE=2 SV=2
Length = 892

Score = 29.6 bits (65), Expect = 4.9
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = -3

Query: 309 PPPAPQTLSSLVHPCTGKCNGFL-CPF*PSPSA-ILPNPH 196
PPP LS HPC+G C+G P P PS+ LP+ H
Sbjct: 323 PPP----LSGCSHPCSGHCSGHCGGPLLPPPSSQPLPSTH 358


>sp|P22184|ASF2_HELAN Anther-specific protein SF2 OS=Helianthus
annuus PE=2 SV=1
Length = 121

Score = 29.6 bits (65), Expect = 4.9
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = -1

Query: 239 ALSDHLPLQYCQILTIVIHLPYNGSLIPQAYVVPSLVELHYCFLYDIQPLVITCNLSITL 60
A+S+ P+QYC +T + H + + E YC + + Q L I C+ +
Sbjct: 19 AISESAPVQYCDRVTNLYHEKCDEKQCTEHCKTNEKAESGYCLVVEKQQLSI-CSFDCSK 77

Query: 59 KAPARVVTPP 30
P+ PP
Sbjct: 78 YKPSTPAPPP 87


tr_hit_id A3UFB2
Definition tr|A3UFB2|A3UFB2_9RHOB Putative uncharacterized protein OS=Oceanicaulis alexandrii HTCC2633
Align length 108
Score (bit) 84.0
E-value 4.0e-15
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP917996|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_D04.
(338 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A3UFB2|A3UFB2_9RHOB Putative uncharacterized protein OS=Ocean... 84 4e-15
tr|B6YMG7|B6YMG7_9BACT Lysine 2,3-aminomutase YodO family protei... 60 7e-08
tr|A3CWG6|A3CWG6_METMJ L-lysine 2,3-aminomutase OS=Methanoculleu... 60 7e-08
tr|Q3A1Y1|Q3A1Y1_PELCD L-lysine 2,3-aminomutase OS=Pelobacter ca... 58 2e-07
tr|A6Q3H1|A6Q3H1_NITSB Putative uncharacterized protein OS=Nitra... 54 3e-06
tr|A5IKU9|A5IKU9_THEP1 L-lysine 2,3-aminomutase OS=Thermotoga pe... 54 4e-06
tr|B7RDV2|B7RDV2_9THEM Lysine 2,3-aminomutase YodO family protei... 54 4e-06
tr|A8V291|A8V291_9AQUI Putative uncharacterized protein (Fragmen... 54 4e-06
tr|Q9WXX5|Q9WXX5_THEMA Putative uncharacterized protein OS=Therm... 53 7e-06
tr|B1LA30|B1LA30_THESQ Lysine 2,3-aminomutase YodO family protei... 53 7e-06
tr|Q30XQ3|Q30XQ3_DESDG L-lysine 2,3-aminomutase OS=Desulfovibrio... 53 9e-06
tr|A8UWF2|A8UWF2_9AQUI Putative uncharacterized protein OS=Hydro... 52 1e-05
tr|A6LLS0|A6LLS0_THEM4 Lysine 2,3-aminomutase YodO family protei... 51 3e-05
tr|A2SQB3|A2SQB3_METLZ L-lysine 2,3-aminomutase OS=Methanocorpus... 51 3e-05
tr|A9BFD1|A9BFD1_PETMO Lysine 2,3-aminomutase OS=Petrotoga mobil... 50 4e-05
tr|A0B5G1|A0B5G1_METTP L-lysine 2,3-aminomutase OS=Methanosaeta ... 50 4e-05
tr|B7ICK7|B7ICK7_9THEM Lysine 2,3-aminomutase YodO family protei... 50 7e-05
tr|Q47TA7|Q47TA7_THEFY L-lysine 2,3-aminomutase OS=Thermobifida ... 49 1e-04
tr|Q0A9F3|Q0A9F3_ALHEH L-lysine 2,3-aminomutase OS=Alkalilimnico... 47 4e-04
tr|A8RSG6|A8RSG6_9CLOT Putative uncharacterized protein OS=Clost... 47 4e-04
tr|A6DC63|A6DC63_9PROT Lysine 2,3-aminomutase related protein OS... 47 4e-04
tr|Q5QU26|Q5QU26_IDILO Lysine 2,3-aminomutase related protein en... 47 5e-04
tr|A6EYI0|A6EYI0_9ALTE Radical SAM domain protein OS=Marinobacte... 47 6e-04
tr|B7FX71|B7FX71_PHATR Predicted protein OS=Phaeodactylum tricor... 47 6e-04
tr|A1ZJF4|A1ZJF4_9SPHI Lysine 2,3-aminomutase related protein en... 46 8e-04
tr|B0SU51|B0SU51_LEPBP L-lysine 2,3-aminomutase OS=Leptospira bi... 45 0.001
tr|B0SII3|B0SII3_LEPBA Lysine 2,3-aminomutase OS=Leptospira bifl... 45 0.001
tr|Q3A6K4|Q3A6K4_PELCD L-lysine 2,3-aminomutase OS=Pelobacter ca... 45 0.002
tr|B4X4Y6|B4X4Y6_9GAMM Putative uncharacterized protein OS=Alcan... 45 0.002
tr|A6GHW7|A6GHW7_9DELT Radical SAM domain protein OS=Plesiocysti... 45 0.002

>tr|A3UFB2|A3UFB2_9RHOB Putative uncharacterized protein
OS=Oceanicaulis alexandrii HTCC2633 GN=OA2633_12730 PE=4
SV=1
Length = 481

Score = 84.0 bits (206), Expect = 4e-15
Identities = 43/108 (39%), Positives = 66/108 (61%)
Frame = +3

Query: 15 DYNGLWRRNNAGRCFESDAKIAGNYKWLDVIEKAVMEFNKRGHYISLRNQTPIIRKVNDN 194
D NG + R+ GR + ++E+A R +++L NQTPII VND+
Sbjct: 274 DVNGDYVRDERGRPLRNP-----------LVEQAATRLRARP-FVTLENQTPIIDGVNDD 321

Query: 195 SEDLAILQREMVRKGIGNHYIFQCRDVQGKRESAVPVEESWRLFANSQ 338
++ L ++Q+E+ R G+ NHY FQCR+++G R AVPVE++W+L A SQ
Sbjct: 322 ADALRLMQQELKRMGVNNHYFFQCREIEGFRAFAVPVEKAWKLHAESQ 369


>tr|B6YMG7|B6YMG7_9BACT Lysine 2,3-aminomutase YodO family protein
OS=Thermotogales bacterium TBF 19.5.1 GN=KoleDRAFT_1519
PE=4 SV=1
Length = 378

Score = 59.7 bits (143), Expect = 7e-08
Identities = 30/76 (39%), Positives = 47/76 (61%)
Frame = +3

Query: 99 DVIEKAVMEFNKRGHYISLRNQTPIIRKVNDNSEDLAILQREMVRKGIGNHYIFQCRDVQ 278
DV +A+ + G L NQTP+IR +ND+ E LA L R++ G+ +Y+FQCR +
Sbjct: 230 DVAIEAINLLKEAG--TELANQTPLIRGINDSPETLAELFRKLSFIGVPPYYVFQCRPTK 287

Query: 279 GKRESAVPVEESWRLF 326
G + +VP+EE + +F
Sbjct: 288 GNKAYSVPIEEGYEIF 303


>tr|A3CWG6|A3CWG6_METMJ L-lysine 2,3-aminomutase OS=Methanoculleus
marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
GN=Memar_1790 PE=4 SV=1
Length = 386

Score = 59.7 bits (143), Expect = 7e-08
Identities = 29/60 (48%), Positives = 40/60 (66%)
Frame = +3

Query: 159 NQTPIIRKVNDNSEDLAILQREMVRKGIGNHYIFQCRDVQGKRESAVPVEESWRLFANSQ 338
NQTP+IR +ND+ E LA L ++ G +Y+FQCR G R AVPVEES+R+F ++
Sbjct: 249 NQTPLIRGINDDPEVLAALFDKLSFIGANPYYVFQCRPAIGNRTFAVPVEESYRIFEQAR 308


>tr|Q3A1Y1|Q3A1Y1_PELCD L-lysine 2,3-aminomutase OS=Pelobacter
carbinolicus (strain DSM 2380 / Gra Bd 1) GN=Pcar_2387
PE=4 SV=1
Length = 376

Score = 58.2 bits (139), Expect = 2e-07
Identities = 25/63 (39%), Positives = 41/63 (65%)
Frame = +3

Query: 147 ISLRNQTPIIRKVNDNSEDLAILQREMVRKGIGNHYIFQCRDVQGKRESAVPVEESWRLF 326
+++ +QTP+IR VND++E L L E+ G+ +Y+FQCR +G VP+EE + +F
Sbjct: 235 VTVMHQTPMIRGVNDSAEVLTELFNELSYMGVAPYYVFQCRPTEGNAAYTVPIEEGYAIF 294

Query: 327 ANS 335
A +
Sbjct: 295 AKA 297


>tr|A6Q3H1|A6Q3H1_NITSB Putative uncharacterized protein
OS=Nitratiruptor sp. (strain SB155-2) GN=NIS_0919 PE=4
SV=1
Length = 425

Score = 54.3 bits (129), Expect = 3e-06
Identities = 28/79 (35%), Positives = 45/79 (56%)
Frame = +3

Query: 99 DVIEKAVMEFNKRGHYISLRNQTPIIRKVNDNSEDLAILQREMVRKGIGNHYIFQCRDVQ 278
D +EKAV + G I R Q PI+R +ND+SE + R+ V G+ +Y+F RD
Sbjct: 268 DEVEKAVKRIQQTGAII--RTQAPILRHINDSSEVWEKMWRKQVHMGMVPYYMFIARDTG 325

Query: 279 GKRESAVPVEESWRLFANS 335
+ VP+ E+W++F ++
Sbjct: 326 AQHYFGVPLVEAWKIFKDA 344


>tr|A5IKU9|A5IKU9_THEP1 L-lysine 2,3-aminomutase OS=Thermotoga
petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995)
GN=Tpet_0803 PE=4 SV=1
Length = 365

Score = 53.9 bits (128), Expect = 4e-06
Identities = 25/61 (40%), Positives = 38/61 (62%)
Frame = +3

Query: 153 LRNQTPIIRKVNDNSEDLAILQREMVRKGIGNHYIFQCRDVQGKRESAVPVEESWRLFAN 332
L NQTP++R +ND+ E L L + G+ +Y+FQ R V G R+ AVP+EE + +F
Sbjct: 233 LCNQTPLLRGINDSPETLGELLDRLSFVGVTPYYVFQNRPVSGNRKFAVPIEEGYEIFTK 292

Query: 333 S 335
+
Sbjct: 293 A 293


>tr|B7RDV2|B7RDV2_9THEM Lysine 2,3-aminomutase YodO family protein
OS=Marinitoga piezophila KA3 GN=MPKA3_1316 PE=4 SV=1
Length = 365

Score = 53.9 bits (128), Expect = 4e-06
Identities = 25/61 (40%), Positives = 38/61 (62%)
Frame = +3

Query: 153 LRNQTPIIRKVNDNSEDLAILQREMVRKGIGNHYIFQCRDVQGKRESAVPVEESWRLFAN 332
L NQTP++R +ND+ E L L + G+ +Y+FQ R V G R+ AVP+EE + +F
Sbjct: 233 LCNQTPLLRGINDSPETLGELLDRLSFVGVTPYYVFQNRPVSGNRKFAVPIEEGYEIFTK 292

Query: 333 S 335
+
Sbjct: 293 A 293


>tr|A8V291|A8V291_9AQUI Putative uncharacterized protein (Fragment)
OS=Hydrogenivirga sp. 128-5-R1-1 GN=HG1285_04843 PE=4
SV=1
Length = 250

Score = 53.9 bits (128), Expect = 4e-06
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Frame = +3

Query: 84 NYKWL--DVIEKAVMEFNKRGHYISLRNQTPIIRKVNDNSEDLAILQREMVRKGIGNHYI 257
+YK L D +++AV + + G I R Q+PI+R +NDN + A + +E V++G+ +Y+
Sbjct: 72 HYKELETDEVKEAVQKIRETGAVI--RTQSPILRHINDNPDVWAKMWKEQVKQGMIPYYM 129

Query: 258 FQCRDVQGKRESAVPVEESWRLF 326
F RD + VP+ +W +F
Sbjct: 130 FMARDTGAQHYFGVPIVRAWEIF 152


>tr|Q9WXX5|Q9WXX5_THEMA Putative uncharacterized protein
OS=Thermotoga maritima GN=TM_0121 PE=4 SV=1
Length = 368

Score = 53.1 bits (126), Expect = 7e-06
Identities = 25/61 (40%), Positives = 38/61 (62%)
Frame = +3

Query: 153 LRNQTPIIRKVNDNSEDLAILQREMVRKGIGNHYIFQCRDVQGKRESAVPVEESWRLFAN 332
L NQTP++R +ND+ E L L + G+ +Y+FQ R V G R+ AVP+EE + +F
Sbjct: 236 LCNQTPLLRGINDDPEVLGELLDRLSFVGVTPYYVFQNRPVSGNRKFAVPIEEGYEIFTK 295

Query: 333 S 335
+
Sbjct: 296 A 296


>tr|B1LA30|B1LA30_THESQ Lysine 2,3-aminomutase YodO family protein
OS=Thermotoga sp. (strain RQ2) GN=TRQ2_0826 PE=4 SV=1
Length = 365

Score = 53.1 bits (126), Expect = 7e-06
Identities = 25/61 (40%), Positives = 38/61 (62%)
Frame = +3

Query: 153 LRNQTPIIRKVNDNSEDLAILQREMVRKGIGNHYIFQCRDVQGKRESAVPVEESWRLFAN 332
L NQTP++R +ND+ E L L + G+ +Y+FQ R V G R+ AVP+EE + +F
Sbjct: 233 LCNQTPLLRGINDDPEVLGELLDRLSFVGVTPYYVFQNRPVSGNRKFAVPIEEGYEIFTK 292

Query: 333 S 335
+
Sbjct: 293 A 293