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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918004
Clone id YMU001_000108_E02
Library
Length 540
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_E02.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GAAAAAGCCAAGATAACTGTTAATATACCTCGAACAAGAGAGGTAGAAACATAACAGGAA
ATGGGGCACATGGACTACATTGTATGCTTAGCATTATCGTCTGGAGATCAAAAAATAACC
CATGTGGCATTTTTCTGTGTAATTAGTAACTGCTAACCAAATGATTCATGTGAGCACTTG
CTAGTGACGTCGACCAGAGACATCTACAGCTCACAAACCAAAAACCTACTGTCGGTAGCT
GGACTTTTGTTGTTGTTGTGTATATGCATCAAATGTACACATTGAACAACACTAACCGAG
GTACTCCTACAAACTATATCTGAACGTATGTACACTACTGAGCCGAAGGAAACCGTTTGT
ATCGAGGCTCTCCCTCCCTCTCTCTGAATACAAAATGCCATAACTTCGCCTGAACATCTC
CCTGGAAACATTCACAAATCTCAAAGCCTCTTAGATGAGAGAAGAAAGCTCAGAGCTTAA
AATAGCTTGCGCTGAACTATGCCATGGTACCACCAATCATCGGAGAGTGAACTTGCTTAC
■■Homology search results ■■ -
sp_hit_id Q9NWQ4
Definition sp|Q9NWQ4|CN118_HUMAN Uncharacterized protein C14orf118 OS=Homo sapiens
Align length 52
Score (bit) 29.6
E-value 9.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918004|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_E02.
         (540 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9NWQ4|CN118_HUMAN Uncharacterized protein C14orf118 OS=Homo ...    30   9.8  
sp|Q9LV85|CPR5_ARATH Protein CPR-5 OS=Arabidopsis thaliana GN=CP...    30   9.9  

>sp|Q9NWQ4|CN118_HUMAN Uncharacterized protein C14orf118 OS=Homo
           sapiens GN=C14orf118 PE=1 SV=2
          Length = 453

 Score = 29.6 bits (65), Expect = 9.8
 Identities = 14/52 (26%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = -3

Query: 187 SLASAHMNHLVSSY*LHRKMPHGLFFDLQTIMLSIQCSPCAPF-PVMFLPLL 35
           +L +  ++H++ +    +++   L   L  +++ +   PC PF P MFLP+L
Sbjct: 334 TLGTERISHIIVTLGRKKRIKRWLLIFLTFLLVHMSSIPCLPFTPWMFLPML 385


>sp|Q9LV85|CPR5_ARATH Protein CPR-5 OS=Arabidopsis thaliana GN=CPR5
           PE=1 SV=1
          Length = 564

 Score = 29.6 bits (65), Expect = 9.9
 Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 5/38 (13%)
 Frame = +1

Query: 370 LPPSL*IQNAITSP-----EHLPGNIHKSQSLLDERRK 468
           LPPS   QN IT+P      H  G++HK ++++ +++K
Sbjct: 6   LPPSPEPQNQITNPANSKPNHQSGDVHKDETMMMKKKK 43
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918004|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_E02.
         (540 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******