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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918005
Clone id YMU001_000108_E04
Library
Length 497
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_E04.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCATAGTTTTCTTTCCTGATGTTGATAATAGATCTTGCAGCCTTTTAGTTGTGGTAGAAA
TGTCTAGTAACTGCTGAGGTTGATTGGATTGCCAGGCGATTTTGTTCCTAGACCCCCAGG
GGAAAGTTTCTGGCGAGTCAGGACGGTCATCATGCATGGTTTTCTTTACTGACGGTGATA
ATAGATCTTGAAGCCTTTTAATTGCGGTAGAGATGTTTAGTACATGCTGAGGCTGATTAG
ACTTCCAGGCGATCTTGATGCTAGACCTTGAGGGAAAAGTTGCTGATAAGTCATTTAGGT
GCCATCAAATCATATTTTCCCCTTAGTCCATAATTCTTGGGAGAATACAAGGCAACGAGC
TGATTTGTTGCTGATAAGTCATTTAGGTGCCAATAAACCATTTTTTCCTCACTCCAATTA
ATTCTTGGGACAATACAAGGCAATGAACTGATTTTTGAACAAATTTCTAGGTCACGATTT
TATTCTTTTACTGGTGC
■■Homology search results ■■ -
sp_hit_id Q5R4E0
Definition sp|Q5R4E0|MAT2B_PONAB Methionine adenosyltransferase 2 subunit beta OS=Pongo abelii
Align length 44
Score (bit) 31.2
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918005|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_E04.
         (497 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5R4E0|MAT2B_PONAB Methionine adenosyltransferase 2 subunit b...    31   2.8  
sp|Q9NZL9|MAT2B_HUMAN Methionine adenosyltransferase 2 subunit b...    31   2.8  
sp|Q29RI9|MAT2B_BOVIN Methionine adenosyltransferase 2 subunit b...    31   2.8  
sp|Q5R7P1|AGR2_PONAB Anterior gradient protein 2 homolog OS=Pong...    30   4.7  
sp|Q3BVY2|KATG_XANC5 Catalase-peroxidase OS=Xanthomonas campestr...    30   6.1  
sp|Q8PMX4|KATG_XANAC Catalase-peroxidase OS=Xanthomonas axonopod...    30   6.1  
sp|O95994|AGR2_HUMAN Anterior gradient protein 2 homolog OS=Homo...    30   6.1  
sp|Q7M8F8|RL17_WOLSU 50S ribosomal protein L17 OS=Wolinella succ...    30   8.0  
sp|P23008|POLG_HRV1A Genome polyprotein (Fragments) OS=Human rhi...    30   8.0  
sp|Q5VST9|OBSCN_HUMAN Obscurin OS=Homo sapiens GN=OBSCN PE=1 SV=3      30   8.0  
sp|Q5U2R0|MAT2B_RAT Methionine adenosyltransferase 2 subunit bet...    30   8.0  
sp|Q99LB6|MAT2B_MOUSE Methionine adenosyltransferase 2 subunit b...    30   8.0  

>sp|Q5R4E0|MAT2B_PONAB Methionine adenosyltransferase 2 subunit beta
           OS=Pongo abelii GN=MAT2B PE=2 SV=1
          Length = 334

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -2

Query: 277 FPSRSSIKIAWKSNQPQHVLNISTAIKRLQD--LLSPSVKKTMH 152
           F ++S+    W+   P HV +++T  ++L +  +L PS+K T H
Sbjct: 206 FSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFH 249


>sp|Q9NZL9|MAT2B_HUMAN Methionine adenosyltransferase 2 subunit beta
           OS=Homo sapiens GN=MAT2B PE=1 SV=1
          Length = 334

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -2

Query: 277 FPSRSSIKIAWKSNQPQHVLNISTAIKRLQD--LLSPSVKKTMH 152
           F ++S+    W+   P HV +++T  ++L +  +L PS+K T H
Sbjct: 206 FSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFH 249


>sp|Q29RI9|MAT2B_BOVIN Methionine adenosyltransferase 2 subunit beta
           OS=Bos taurus GN=MAT2B PE=2 SV=1
          Length = 334

 Score = 31.2 bits (69), Expect = 2.8
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -2

Query: 277 FPSRSSIKIAWKSNQPQHVLNISTAIKRLQD--LLSPSVKKTMH 152
           F ++S+    W+   P HV +++T  ++L +  +L PS+K T H
Sbjct: 206 FSNKSANMDHWQQRFPTHVKDVATVCRQLAEKRMLDPSIKGTFH 249


>sp|Q5R7P1|AGR2_PONAB Anterior gradient protein 2 homolog OS=Pongo
           abelii GN=AGR2 PE=2 SV=1
          Length = 175

 Score = 30.4 bits (67), Expect = 4.7
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -2

Query: 181 LSPSVKKTMHDDRPDSPETFPWGSRNKIAWQSNQPQQLLDISTTTKRL 38
           + P+ KK   D RP  P+T   G  +++ W     + L    T+ K L
Sbjct: 25  VKPAAKKDTKDSRPKLPQTLSRGWGDQLIWTQTYEEALYKSKTSNKPL 72


>sp|Q3BVY2|KATG_XANC5 Catalase-peroxidase OS=Xanthomonas campestris
           pv. vesicatoria (strain 85-10) GN=katG PE=3 SV=1
          Length = 748

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 7/43 (16%)
 Frame = -2

Query: 115 GSRNKIA----WQSNQPQQLLDISTTTKRLQ---DLLSTSGKK 8
           G+R ++A    WQ+NQP+QL  +  T +R+Q   +   + GKK
Sbjct: 502 GARIRLAPQKDWQANQPEQLAKVLATLERIQADFNAAQSGGKK 544


>sp|Q8PMX4|KATG_XANAC Catalase-peroxidase OS=Xanthomonas axonopodis
           pv. citri GN=katG PE=3 SV=2
          Length = 748

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/43 (37%), Positives = 26/43 (60%), Gaps = 7/43 (16%)
 Frame = -2

Query: 115 GSRNKIA----WQSNQPQQLLDISTTTKRLQ---DLLSTSGKK 8
           G+R ++A    WQ+NQP+QL  +  T +R+Q   +   + GKK
Sbjct: 502 GARIRLAPQKEWQANQPEQLAKVLATLERIQADFNAAQSGGKK 544


>sp|O95994|AGR2_HUMAN Anterior gradient protein 2 homolog OS=Homo
           sapiens GN=AGR2 PE=1 SV=1
          Length = 175

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 14/48 (29%), Positives = 21/48 (43%)
 Frame = -2

Query: 181 LSPSVKKTMHDDRPDSPETFPWGSRNKIAWQSNQPQQLLDISTTTKRL 38
           + P  KK   D RP  P+T   G  +++ W     + L    T+ K L
Sbjct: 25  VKPGAKKDTKDSRPKLPQTLSRGWGDQLIWTQTYEEALYKSKTSNKPL 72


>sp|Q7M8F8|RL17_WOLSU 50S ribosomal protein L17 OS=Wolinella
           succinogenes GN=rplQ PE=3 SV=1
          Length = 116

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -1

Query: 467 EICSKISSLPCIVPRINWSEEKMVYWHLNDLSATNQLVALYSPKNYGLRGKY 312
           E+ S I  L       +++  + V+ HL D +ATN+LV   +PK    +G Y
Sbjct: 43  ELQSYIEKLITKASEGSFNAHRAVFAHLQDKNATNKLVVEIAPKYSDRKGGY 94


>sp|P23008|POLG_HRV1A Genome polyprotein (Fragments) OS=Human
           rhinovirus 1A PE=1 SV=2
          Length = 833

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
 Frame = -2

Query: 427 QELIGVRKKWFIGT*MTYQQQISSLPCILPRIMD*GENMI*WHLNDLSATFPSR------ 266
           QE+  +R+K+ + T + +  +I+ +PCI  R  D G  ++ +      A  PS+      
Sbjct: 650 QEMAQIRRKFELFTYVRFDSEITLVPCIAGRGDDIGHIVMQYMYVPPGAPIPSKRNDFSW 709

Query: 265 ---SSIKIAWKSNQP 230
              +++ I W+  QP
Sbjct: 710 QSGTNMSIFWQHGQP 724


>sp|Q5VST9|OBSCN_HUMAN Obscurin OS=Homo sapiens GN=OBSCN PE=1 SV=3
          Length = 7968

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -1

Query: 470  LEICSKISSLPCIVPRINWSEEKMVYWHLNDLSATNQL 357
            LE+CS    LPC+  R ++SE ++  +    LSAT  L
Sbjct: 7745 LELCSGPELLPCLAERASYSESEVKDYLWQMLSATQYL 7782
tr_hit_id Q6D9K8
Definition tr|Q6D9K8|Q6D9K8_ERWCT Cfa-beta-ketoacylsynthase OS=Erwinia carotovora subsp. atroseptica
Align length 73
Score (bit) 34.3
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918005|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_E04.
         (497 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6D9K8|Q6D9K8_ERWCT Cfa-beta-ketoacylsynthase OS=Erwinia caro...    34   3.4  
tr|Q2SSH8|Q2SSH8_MYCCT Membrane protein, putative OS=Mycoplasma ...    34   3.4  
tr|A7N3A1|A7N3A1_VIBHB Putative uncharacterized protein OS=Vibri...    34   3.4  
tr|A8Q6H4|A8Q6H4_BRUMA Putative uncharacterized protein OS=Brugi...    33   5.7  
tr|B7RVP7|B7RVP7_9GAMM Amine oxidase, flavin-containing superfam...    33   7.5  

>tr|Q6D9K8|Q6D9K8_ERWCT Cfa-beta-ketoacylsynthase OS=Erwinia
           carotovora subsp. atroseptica GN=cfa3 PE=3 SV=1
          Length = 381

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 14/73 (19%)
 Frame = -2

Query: 298 LNDLSATFPSRSS-------IKIAWKSNQPQHVLNISTAIKRLQDLLSP-------SVKK 161
           + DL +T   RS+       I + W+  + QHVL + T  K L+D   P       +V  
Sbjct: 37  ITDLESTLSLRSNLAAPIPDIPLEWEGARRQHVLTVKTLRKALEDASIPADDPDILAVLG 96

Query: 160 TMHDDRPDSPETF 122
           T +    DSP+TF
Sbjct: 97  TSYGHHLDSPDTF 109


>tr|Q2SSH8|Q2SSH8_MYCCT Membrane protein, putative OS=Mycoplasma
           capricolum subsp. capricolum (strain California kid /
           ATCC 27343 / NCTC 10154) GN=MCAP_0299 PE=4 SV=1
          Length = 1646

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 17/49 (34%), Positives = 26/49 (53%)
 Frame = -2

Query: 343 LPRIMD*GENMI*WHLNDLSATFPSRSSIKIAWKSNQPQHVLNISTAIK 197
           LP+I   G N   + LN    T+   S +K+ W+SN P  +L ++  IK
Sbjct: 608 LPKIDSDGNNTNEFELNSKVRTYIYHSDVKLKWQSNDPTDILLVNGEIK 656


>tr|A7N3A1|A7N3A1_VIBHB Putative uncharacterized protein OS=Vibrio
           harveyi (strain ATCC BAA-1116 / BB120) GN=VIBHAR_05027
           PE=4 SV=1
          Length = 336

 Score = 34.3 bits (77), Expect = 3.4
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = -2

Query: 217 NISTAIKRLQDLLSPSVKKTMHDDRPDSPETFPWGSRNKIAWQSNQPQQLLDISTTTKRL 38
           N   A K L  L++  +  T+H+   D P+      RN +A + ++  +  ++ T  K  
Sbjct: 192 NTDGAYKNLDSLVNDLINTTIHEVHQDDPDLVVLIGRNLVAAEQHRLLESAEVPTEHKAA 251

Query: 37  QDLLSTSGKKTM 2
           Q L  T   KT+
Sbjct: 252 QSLAKTVAGKTV 263


>tr|A8Q6H4|A8Q6H4_BRUMA Putative uncharacterized protein OS=Brugia
           malayi GN=Bm1_44350 PE=4 SV=1
          Length = 345

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 22/82 (26%), Positives = 36/82 (43%)
 Frame = -2

Query: 274 PSRSSIKIAWKSNQPQHVLNISTAIKRLQDLLSPSVKKTMHDDRPDSPETFPWGSRNKIA 95
           P R  + +A K    + +L+   A+K+      P + KT   D  +SPE     S +K  
Sbjct: 254 PPRQGVMVAHKRTSQRELLSRIVAVKKQMKKNKPVIIKTEIQDATNSPENSQEHSTSKQF 313

Query: 94  WQSNQPQQLLDISTTTKRLQDL 29
              N+  Q +  ++T   LQ L
Sbjct: 314 ETHNRESQPISPTSTLSALQGL 335


>tr|B7RVP7|B7RVP7_9GAMM Amine oxidase, flavin-containing superfamily
           OS=marine gamma proteobacterium HTCC2148 GN=GPB2148_2239
           PE=4 SV=1
          Length = 430

 Score = 33.1 bits (74), Expect = 7.5
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
 Frame = -1

Query: 434 IVPRINWSEEKMVYWHLNDLSATNQLVALYSPKNYGLRGK--YDLMA 300
           I  R+NW+E +M YW  N L      +AL       L GK  Y LMA
Sbjct: 75  IADRMNWTETRMGYWFNNKLQPWGNPIALLRFSGLSLIGKIRYGLMA 121