BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918007|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_E07.
         (365 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A8FFW2|LEUD_BACP2 3-isopropylmalate dehydratase small subunit...    31   1.7  
sp|P30203|CD6_HUMAN T-cell differentiation antigen CD6 OS=Homo s...    31   1.7  
sp|Q4W9R7|MCD4_ASPFU GPI ethanolamine phosphate transferase 1 OS...    30   3.8  
sp|P94568|LEUD_BACSU 3-isopropylmalate dehydratase small subunit...    30   4.9  
sp|A6UDX5|LEUD_SINMW 3-isopropylmalate dehydratase small subunit...    29   8.4  
sp|Q7Z2Y8|GVIN1_HUMAN Interferon-induced very large GTPase 1 OS=...    29   8.4  

>sp|A8FFW2|LEUD_BACP2 3-isopropylmalate dehydratase small subunit
           OS=Bacillus pumilus (strain SAFR-032) GN=leuD PE=3 SV=1
          Length = 199

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = +3

Query: 246 PKDRVKIKVEHTHEGIPPFKDVRHSAVGSPQPNFGMSEPI 365
           PK  +K ++E T  G   F D R+ A GSP P+F +++PI
Sbjct: 26  PKQFLK-RIERTGYGRFAFFDWRYLADGSPNPDFELNQPI 64


>sp|P30203|CD6_HUMAN T-cell differentiation antigen CD6 OS=Homo
           sapiens GN=CD6 PE=1 SV=2
          Length = 668

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -1

Query: 188 NSIGRRLQMTLPHQSLALRSSNGAL---WTIRRELFAHWRSLCGALWQTRCVH-I*SLLF 21
           N+     ++  P + L +R +NG+     T+   L A W   CGALW +R    +   L 
Sbjct: 28  NTSSAESELWEPGERLPVRLTNGSSSCSGTVEVRLEASWEPACGALWDSRAAEAVCRALG 87

Query: 20  CSG 12
           C G
Sbjct: 88  CGG 90


>sp|Q4W9R7|MCD4_ASPFU GPI ethanolamine phosphate transferase 1
           OS=Aspergillus fumigatus GN=mcd4 PE=2 SV=1
          Length = 1032

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = -1

Query: 311 NVFEWGDSLM---GMFYLNFDPIFRELNRSSTTRPTEVHSLGSDNSIGRRLQMTL 156
           N   +G  LM   G+FYL F+    + ++SS   P  + SLGS   +G ++ M L
Sbjct: 649 NTITYGALLMFFTGLFYLLFEDTILKHSKSSGHAPGAISSLGSRVIMGMQVGMVL 703


>sp|P94568|LEUD_BACSU 3-isopropylmalate dehydratase small subunit
           OS=Bacillus subtilis GN=leuD PE=3 SV=1
          Length = 199

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +3

Query: 246 PKDRVKIKVEHTHEGIPPFKDVRHSAVGSPQPNFGMSEPI 365
           PK  +K ++E T  G   F D R+ A G P P F +++P+
Sbjct: 26  PKQFLK-RIERTGYGRFAFFDWRYDANGEPNPEFELNQPV 64


>sp|A6UDX5|LEUD_SINMW 3-isopropylmalate dehydratase small subunit
           OS=Sinorhizobium medicae (strain WSM419) GN=leuD PE=3
           SV=1
          Length = 201

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/39 (35%), Positives = 24/39 (61%)
 Frame = +3

Query: 246 PKDRVKIKVEHTHEGIPPFKDVRHSAVGSPQPNFGMSEP 362
           PKD +K  ++ T  G   F + R++  GSP P+F +++P
Sbjct: 26  PKDYLKT-IKRTGLGTGLFAEARYNEDGSPNPDFVLNKP 63


>sp|Q7Z2Y8|GVIN1_HUMAN Interferon-induced very large GTPase 1
           OS=Homo sapiens GN=GVIN1 PE=2 SV=2
          Length = 2422

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 110 SKEHHLNSSELETGVAKSFEDVDLCCCHFPMNALQ 214
           SKE   +SSE     +  F  + L  CHFP++ LQ
Sbjct: 274 SKETQQSSSENSYFCSTKFSYIPLASCHFPIDQLQ 308

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918007|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_E07.
         (365 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q53P86|Q53P86_ORYSJ Expressed protein OS=Oryza sativa subsp. ...    33   5.5  
tr|B4YYF3|B4YYF3_9BIVA NADH dehydrogenase subunit 2 OS=Chlamys f...    33   9.3  

>tr|Q53P86|Q53P86_ORYSJ Expressed protein OS=Oryza sativa subsp.
           japonica PE=4 SV=1
          Length = 94

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -1

Query: 266 NFDPIFRELNRSSTTRPTEVHSLGSDNSIGRRLQMTLPHQSLALRSSN 123
           +FDP F + +  S +R +    L S +S+ RR + T PH+  A+ SS+
Sbjct: 11  SFDPCFTDAHTVSPSRTSTPRLLASASSLRRRCRPTRPHRRWAVASSS 58


>tr|B4YYF3|B4YYF3_9BIVA NADH dehydrogenase subunit 2 OS=Chlamys
           farreri GN=ND2 PE=4 SV=1
          Length = 318

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 161 TLPHQSLALRSSNGALWTIRRELFAHWRSLCGALW 57
           ++ H   +L S  G LW +   L A+W SL G LW
Sbjct: 169 SVAHTGWSLASCYGGLWVLAYYLLAYWTSLGGFLW 203