BP918009 |
Clone id |
YMU001_000108_E09 |
Library |
YMU01 |
Length |
315 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000108_E09. |
Accession |
BP918009 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL2Contig2 |
Sequence |
CAAAAGCTCATAAGAGCAAGCTTGTTAGGCGCCAGTGGGAAATGGGAAGCAGGCATTCAT GCCAACTAAATTGGCTTGCTTTAAGAAAGTTTAGACAGAGGGCTTCTGGACAAGGAAGCC GGAGACCTGCACCTGCCTCTTAGCGTCAAAGCCCAGCACGCGGATGAAGGCTTCAGGATA CTCCTTGGCGCACTCTGCAATTTCACGCAGCACAGCAGCGGCATCTTGGCAGCCAAACAT GGGCAGCTTCCACATCACCCAGTACCGCCCATCGTAGTAACCGCTGCCGTGGAAGTGCTC TCGGTACACGCTCCC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q40250 |
Definition |
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa |
Align length |
72 |
Score (bit) |
116.0 |
E-value |
3.0e-26 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918009|Adiantum capillus-veneris mRNA, clone: YMU001_000108_E09. (315 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 116 3e-26 sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 113 3e-25 sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 112 6e-25 sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 111 1e-24 sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chai... 110 3e-24 sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 109 4e-24 sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 109 4e-24 sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 109 4e-24 sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chai... 107 1e-23 sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small cha... 107 1e-23 sp|P05346|RBS1_BRANA Ribulose bisphosphate carboxylase small cha... 107 1e-23 sp|P07089|RBS_FLATR Ribulose bisphosphate carboxylase small chai... 107 2e-23 sp|P08474|RBS_CUCSA Ribulose bisphosphate carboxylase small chai... 107 2e-23 sp|Q39749|RBS7_FLAPR Ribulose bisphosphate carboxylase small cha... 107 2e-23 sp|Q39747|RBS5_FLAPR Ribulose bisphosphate carboxylase small cha... 107 2e-23 sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha... 107 2e-23 sp|Q39745|RBS3_FLAPR Ribulose bisphosphate carboxylase small cha... 107 2e-23 sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha... 107 2e-23 sp|Q39743|RBS1_FLAPR Ribulose bisphosphate carboxylase small cha... 107 2e-23 sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 107 2e-23 sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai... 107 2e-23 sp|O22573|RBS3_FRIAG Ribulose bisphosphate carboxylase small cha... 107 2e-23 sp|O22572|RBS2_FRIAG Ribulose bisphosphate carboxylase small cha... 107 2e-23 sp|O24045|RBS_MUSAC Ribulose bisphosphate carboxylase small chai... 106 3e-23 sp|P26573|RBS8_NICPL Ribulose bisphosphate carboxylase small cha... 106 3e-23 sp|Q39748|RBS6_FLAPR Ribulose bisphosphate carboxylase small cha... 105 5e-23 sp|O24634|RBS1_FRIAG Ribulose bisphosphate carboxylase small cha... 105 5e-23 sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 104 1e-22 sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai... 104 1e-22 sp|P26574|RBS1_SOLTU Ribulose bisphosphate carboxylase small cha... 104 1e-22
>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1 Length = 181
Score = 116 bits (291), Expect = 3e-26 Identities = 50/72 (69%), Positives = 56/72 (77%) Frame = -1
Query: 315 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKR 136 G VYREH H GYYDGRYW MWKLPMFGC D+A V++E+ EC KEYP AFIRV+GFD R Sbjct: 106 GFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQVMKEVGECKKEYPNAFIRVIGFDNIR 165
Query: 135 QVQVSGFLVQKP 100 QVQ F+V KP Sbjct: 166 QVQCISFIVAKP 177
>sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small chain 2, chloroplastic OS=Spinacia oleracea GN=RBCS2 PE=1 SV=1 Length = 180
Score = 113 bits (282), Expect = 3e-25 Identities = 48/73 (65%), Positives = 55/73 (75%) Frame = -1
Query: 315 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKR 136 G VYREH + GYYDGRYW MWKLPMFGC D A VL E+ EC KEYP AFIR++GFD+ R Sbjct: 106 GFVYREHHNSPGYYDGRYWTMWKLPMFGCTDPAQVLNELEECKKEYPNAFIRIIGFDSNR 165
Query: 135 QVQVSGFLVQKPS 97 QVQ F+ KP+ Sbjct: 166 QVQCVSFIAYKPA 178
>sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Betula verrucosa GN=RBCS1 PE=2 SV=1 Length = 182
Score = 112 bits (280), Expect = 6e-25 Identities = 47/72 (65%), Positives = 55/72 (76%) Frame = -1
Query: 315 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKR 136 G VYREH GYYDGRYW MWKLPMFGC D++ VL+E+ EC K YP AFIR++GFD KR Sbjct: 108 GFVYREHNRSPGYYDGRYWTMWKLPMFGCNDSSQVLKELEECKKAYPSAFIRIIGFDNKR 167
Query: 135 QVQVSGFLVQKP 100 QVQ+ F+ KP Sbjct: 168 QVQIISFIAYKP 179
>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain 1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A PE=1 SV=2 Length = 180
Score = 111 bits (277), Expect = 1e-24 Identities = 47/72 (65%), Positives = 55/72 (76%) Frame = -1
Query: 315 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKR 136 G VYREH + GYYDGRYW MWKLP+FGC D+A VL+E+ EC KEYP AFIR++GFD R Sbjct: 104 GFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPNAFIRIIGFDNTR 163
Query: 135 QVQVSGFLVQKP 100 QVQ F+ KP Sbjct: 164 QVQCISFIAYKP 175
>sp|P13951|RBS_SINAL Ribulose bisphosphate carboxylase small chain (Fragment) OS=Sinapis alba GN=RBCS PE=3 SV=1 Length = 82
Score = 110 bits (274), Expect = 3e-24 Identities = 47/72 (65%), Positives = 54/72 (75%) Frame = -1
Query: 315 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKR 136 G VYREH GYYDGRYW MWKLP+FGC D+A VL+E+ EC KEYP AFIR++GFD R Sbjct: 5 GFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNAFIRIIGFDNNR 64
Query: 135 QVQVSGFLVQKP 100 QVQ F+ KP Sbjct: 65 QVQCISFIAYKP 76
>sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small chain 3B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-3B PE=1 SV=2 Length = 181
Score = 109 bits (273), Expect = 4e-24 Identities = 47/72 (65%), Positives = 55/72 (76%) Frame = -1
Query: 315 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKR 136 G VYREH + GYYDGRYW MWKLP+FGC D+A VL+E+ EC KEYP AFIR++GFD R Sbjct: 104 GFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTR 163
Query: 135 QVQVSGFLVQKP 100 QVQ F+ KP Sbjct: 164 QVQCISFIAYKP 175
>sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small chain 2B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-2B PE=2 SV=2 Length = 181
Score = 109 bits (273), Expect = 4e-24 Identities = 47/72 (65%), Positives = 55/72 (76%) Frame = -1
Query: 315 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKR 136 G VYREH + GYYDGRYW MWKLP+FGC D+A VL+E+ EC KEYP AFIR++GFD R Sbjct: 104 GFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTR 163
Query: 135 QVQVSGFLVQKP 100 QVQ F+ KP Sbjct: 164 QVQCISFIAYKP 175
>sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small chain 1B, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1B PE=1 SV=1 Length = 181
Score = 109 bits (273), Expect = 4e-24 Identities = 47/72 (65%), Positives = 55/72 (76%) Frame = -1
Query: 315 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKR 136 G VYREH + GYYDGRYW MWKLP+FGC D+A VL+E+ EC KEYP AFIR++GFD R Sbjct: 104 GFVYREHGNTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVEECKKEYPGAFIRIIGFDNTR 163
Query: 135 QVQVSGFLVQKP 100 QVQ F+ KP Sbjct: 164 QVQCISFIAYKP 175
>sp|P08135|RBS_RAPSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Raphanus sativus GN=RBCS PE=2 SV=1 Length = 181
Score = 107 bits (268), Expect = 1e-23 Identities = 46/72 (63%), Positives = 53/72 (73%) Frame = -1
Query: 315 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKR 136 G VYREH GYYDGRYW MWKLP+FGC D+A VL+E+ EC KEYP A IR++GFD R Sbjct: 104 GFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKKEYPNALIRIIGFDNNR 163
Query: 135 QVQVSGFLVQKP 100 QVQ F+ KP Sbjct: 164 QVQCISFIAYKP 175
>sp|P27985|RBS2_BRANA Ribulose bisphosphate carboxylase small chain F1, chloroplastic OS=Brassica napus GN=RBCS F1 PE=3 SV=1 Length = 181
Score = 107 bits (268), Expect = 1e-23 Identities = 46/72 (63%), Positives = 53/72 (73%) Frame = -1
Query: 315 GSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAKR 136 G VYREH GYYDGRYW MWKLP+FGC D+A VL+E+ EC EYP AFIR++GFD R Sbjct: 104 GFVYREHGSTPGYYDGRYWTMWKLPLFGCTDSAQVLKEVQECKTEYPNAFIRIIGFDNNR 163
Query: 135 QVQVSGFLVQKP 100 QVQ F+ KP Sbjct: 164 QVQCISFIAYKP 175
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q43110 |
Definition |
tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata |
Align length |
73 |
Score (bit) |
146.0 |
E-value |
6.0e-34 |
Report |
|