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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918017
Clone id YMU001_000108_F05
Library
Length 267
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_F05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ACAGCCAAAAACTTGCTAGGTAATGCCTTGCAATGCAAATAATAAAGAGTTCCCTTCTTG
CTGCCCTTTACAATCAGCGTAGAGCCTTTAAGCACTTTCCAAGAGCCATCACCAAACATA
GTGTGATAACCCTTCACATCTAGCTGCCCAACCGAAAGTAGACTTTTCTTGATGCCAGGT
ACAATCTTCCAAGTATCTGGTAGCTTAAGTCTAAGAATACATTACTTATCTTTTCCTATA
CTGGGAAGGGCCCATAGTATCCCATAC
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 47
Score (bit) 44.7
E-value 0.0001
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918017|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_F05.
         (267 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...    45   1e-04

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score = 44.7 bits (104), Expect = 1e-04
 Identities = 20/47 (42%), Positives = 30/47 (63%)
 Frame = -2

Query: 182 VPGIKKSLLSVGQLDVKGYHTMFGDGSWKVLKGSTLIVKGSKKGTLY 42
           VP ++ +L+S   LD  GY + F +  W++ KGS +I KG  +GTLY
Sbjct: 356 VPDLRMNLISGIALDRDGYESYFANQKWRLTKGSLVIAKGVARGTLY 402
tr_hit_id A5BIC7
Definition tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis vinifera
Align length 69
Score (bit) 59.7
E-value 7.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918017|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_F05.
         (267 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis...    60   7e-08
tr|A5B6M5|A5B6M5_VITVI Putative uncharacterized protein OS=Vitis...    59   9e-08
tr|A5AJI7|A5AJI7_VITVI Putative uncharacterized protein OS=Vitis...    59   9e-08
tr|A5ADX1|A5ADX1_VITVI Putative uncharacterized protein OS=Vitis...    59   1e-07
tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, wh...    59   2e-07
tr|A7QG92|A7QG92_VITVI Chromosome undetermined scaffold_91, whol...    59   2e-07
tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis...    59   2e-07
tr|A5BPB3|A5BPB3_VITVI Putative uncharacterized protein OS=Vitis...    59   2e-07
tr|A5BM25|A5BM25_VITVI Putative uncharacterized protein OS=Vitis...    59   2e-07
tr|A5BGX3|A5BGX3_VITVI Putative uncharacterized protein OS=Vitis...    59   2e-07
tr|A5BA89|A5BA89_VITVI Putative uncharacterized protein OS=Vitis...    59   2e-07
tr|A5B0V5|A5B0V5_VITVI Putative uncharacterized protein OS=Vitis...    59   2e-07
tr|A5B0C8|A5B0C8_VITVI Putative uncharacterized protein OS=Vitis...    59   2e-07
tr|A5AYT3|A5AYT3_VITVI Putative uncharacterized protein OS=Vitis...    59   2e-07
tr|A5AQN2|A5AQN2_VITVI Putative uncharacterized protein OS=Vitis...    59   2e-07
tr|A5AER2|A5AER2_VITVI Putative uncharacterized protein OS=Vitis...    59   2e-07
tr|A5CAX7|A5CAX7_VITVI Putative uncharacterized protein OS=Vitis...    58   2e-07
tr|A5B0E4|A5B0E4_VITVI Putative uncharacterized protein OS=Vitis...    58   2e-07
tr|A5BWL7|A5BWL7_VITVI Putative uncharacterized protein OS=Vitis...    58   3e-07
tr|A5BHI5|A5BHI5_VITVI Putative uncharacterized protein OS=Vitis...    58   3e-07
tr|A5BE96|A5BE96_VITVI Putative uncharacterized protein OS=Vitis...    58   3e-07
tr|A5BD56|A5BD56_VITVI Putative uncharacterized protein OS=Vitis...    58   3e-07
tr|A5APH6|A5APH6_VITVI Putative uncharacterized protein OS=Vitis...    58   3e-07
tr|A5AN26|A5AN26_VITVI Putative uncharacterized protein OS=Vitis...    58   3e-07
tr|A5AM64|A5AM64_VITVI Putative uncharacterized protein OS=Vitis...    58   3e-07
tr|A7NUU2|A7NUU2_VITVI Chromosome chr18 scaffold_1, whole genome...    57   3e-07
tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis...    57   3e-07
tr|A5C6L3|A5C6L3_VITVI Putative uncharacterized protein OS=Vitis...    57   3e-07
tr|A5BK92|A5BK92_VITVI Putative uncharacterized protein OS=Vitis...    57   3e-07
tr|A5BBW7|A5BBW7_VITVI Putative uncharacterized protein OS=Vitis...    57   3e-07

>tr|A5BIC7|A5BIC7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_024822 PE=4 SV=1
          Length = 1250

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 7/69 (10%)
 Frame = -2

Query: 215 LRLKLPD--TWKI-----VPGIKKSLLSVGQLDVKGYHTMFGDGSWKVLKGSTLIVKGSK 57
           +R+ LP+   W +     +P +K++L+SVGQLD +G+  +F  G+WKV KG+ ++ +G K
Sbjct: 330 VRISLPNGSVWLLEKVRHIPDLKRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKK 389

Query: 56  KGTLYYLHC 30
            GTLY   C
Sbjct: 390 TGTLYMTSC 398


>tr|A5B6M5|A5B6M5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_035792 PE=4 SV=1
          Length = 1179

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 28/69 (40%), Positives = 45/69 (65%), Gaps = 7/69 (10%)
 Frame = -2

Query: 215 LRLKLPD--TWKI-----VPGIKKSLLSVGQLDVKGYHTMFGDGSWKVLKGSTLIVKGSK 57
           +R+ LP+   W +     +  +K++L+SVGQLD +G+  +F DG+WKV KG+ ++ +G K
Sbjct: 330 VRISLPNGSVWLLEKVRHISDLKRNLISVGQLDDEGHAILFVDGTWKVTKGARVLARGKK 389

Query: 56  KGTLYYLHC 30
            GTLY   C
Sbjct: 390 TGTLYMTSC 398


>tr|A5AJI7|A5AJI7_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038145 PE=4 SV=1
          Length = 579

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 25/59 (42%), Positives = 40/59 (67%)
 Frame = -2

Query: 182 VPGIKKSLLSVGQLDVKGYHTMFGDGSWKVLKGSTLIVKGSKKGTLYYLHCKALPSKFL 6
           VP ++ SL+SVG+LD +GYH+  G+G WK+ KGS ++ +G K  TLY +  + +  + L
Sbjct: 230 VPXMRFSLISVGKLDDEGYHSHLGEGKWKITKGSLVLXRGKKNNTLYKIEVRLVKGEGL 288


>tr|A5ADX1|A5ADX1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_009113 PE=4 SV=1
          Length = 1141

 Score = 58.9 bits (141), Expect = 1e-07
 Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 8/70 (11%)
 Frame = -2

Query: 215 LRLKLPDTWKI--------VPGIKKSLLSVGQLDVKGYHTMFGDGSWKVLKGSTLIVKGS 60
           +R+ LP+ W +        +P ++++L+SVGQLD +G+  +F  G+WKV KG+ ++ +G 
Sbjct: 265 VRISLPN-WSVWLLEKVQHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGK 323

Query: 59  KKGTLYYLHC 30
           K GTLY   C
Sbjct: 324 KTGTLYMTSC 333


>tr|A7R7G1|A7R7G1_VITVI Chromosome undetermined scaffold_1754, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00009987001 PE=4 SV=1
          Length = 466

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 7/69 (10%)
 Frame = -2

Query: 215 LRLKLPD--TWKI-----VPGIKKSLLSVGQLDVKGYHTMFGDGSWKVLKGSTLIVKGSK 57
           +R+ LP+   W +     +P ++++L+SVGQLD +G+  +F  G+WKV KG+ ++ +G K
Sbjct: 270 VRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKK 329

Query: 56  KGTLYYLHC 30
            GTLY   C
Sbjct: 330 TGTLYMTSC 338


>tr|A7QG92|A7QG92_VITVI Chromosome undetermined scaffold_91, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00037749001 PE=4 SV=1
          Length = 788

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 7/69 (10%)
 Frame = -2

Query: 215 LRLKLPD--TWKI-----VPGIKKSLLSVGQLDVKGYHTMFGDGSWKVLKGSTLIVKGSK 57
           +R+ LP+   W +     +P ++++L+SVGQLD +G+  +F  G+WKV KG+ ++ +G K
Sbjct: 613 VRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKK 672

Query: 56  KGTLYYLHC 30
            GTLY   C
Sbjct: 673 TGTLYMTSC 681


>tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_001479 PE=4 SV=1
          Length = 1246

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 7/69 (10%)
 Frame = -2

Query: 215 LRLKLPD--TWKI-----VPGIKKSLLSVGQLDVKGYHTMFGDGSWKVLKGSTLIVKGSK 57
           +R+ LP+   W +     +P ++++L+SVGQLD +G+  +F  G+WKV KG+ ++ +G K
Sbjct: 302 VRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKK 361

Query: 56  KGTLYYLHC 30
            GTLY   C
Sbjct: 362 TGTLYMTSC 370


>tr|A5BPB3|A5BPB3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_034935 PE=4 SV=1
          Length = 1137

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 7/69 (10%)
 Frame = -2

Query: 215 LRLKLPD--TWKI-----VPGIKKSLLSVGQLDVKGYHTMFGDGSWKVLKGSTLIVKGSK 57
           +R+ LP+   W +     +P ++++L+SVGQLD +G+  +F  G+WKV KG+ ++ +G K
Sbjct: 284 VRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKK 343

Query: 56  KGTLYYLHC 30
            GTLY   C
Sbjct: 344 TGTLYMTSC 352


>tr|A5BM25|A5BM25_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043524 PE=4 SV=1
          Length = 1535

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 7/69 (10%)
 Frame = -2

Query: 215 LRLKLPD--TWKI-----VPGIKKSLLSVGQLDVKGYHTMFGDGSWKVLKGSTLIVKGSK 57
           +R+ LP+   W +     +P ++++L+SVGQLD +G+  +F  G+WKV KG+ ++ +G K
Sbjct: 597 VRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKK 656

Query: 56  KGTLYYLHC 30
            GTLY   C
Sbjct: 657 TGTLYMTSC 665


>tr|A5BGX3|A5BGX3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_003944 PE=4 SV=1
          Length = 1236

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 27/69 (39%), Positives = 45/69 (65%), Gaps = 7/69 (10%)
 Frame = -2

Query: 215 LRLKLPD--TWKI-----VPGIKKSLLSVGQLDVKGYHTMFGDGSWKVLKGSTLIVKGSK 57
           +R+ LP+   W +     +P ++++L+SVGQLD +G+  +F  G+WKV KG+ ++ +G K
Sbjct: 330 VRISLPNGSVWLLEKVRHIPDLRRNLISVGQLDDEGHAILFVGGTWKVTKGARVLARGKK 389

Query: 56  KGTLYYLHC 30
            GTLY   C
Sbjct: 390 TGTLYMTSC 398