BP918021
Clone id YMU001_000108_F10
Library
Length 163
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_F10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence
CCAATCACAGCTAGGGCTAAGCCAACAGGTCAGTGGATGACAACAACGTATAGCATCAGG
GAAGTAAGCAACAGAGCGAGGTTATCAAGTGGAAGGAAACAGGTACAACAGGCACATTAG
GTGCATGAGCTGCTGGGCTAGGGCTGATATGAAAGAGGGTGGA
■■Homology search results ■■ -
sp_hit_id Q0RBN8
Definition sp|Q0RBN8|ISPF_FRAAA 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase OS=Frankia alni (strain ACN14a)
Align length 36
Score (bit) 30.4
E-value 2.9
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918021|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_F10.
(163 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q0RBN8|ISPF_FRAAA 2-C-methyl-D-erythritol 2,4-cyclodiphosphat... 30 2.9

>sp|Q0RBN8|ISPF_FRAAA 2-C-methyl-D-erythritol 2,4-cyclodiphosphate
synthase OS=Frankia alni (strain ACN14a) GN=ispF PE=3
SV=1
Length = 160

Score = 30.4 bits (67), Expect = 2.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1

Query: 7 TARAKPTGQWMTTTYSIREVSNRARLSSGRKQVQQA 114
TAR G W+ S++ + NR R+++ R+Q Q A
Sbjct: 86 TARLLAVGGWVIGNVSVQVIGNRPRMAARREQAQAA 121


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= BP918021|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_F10.
(163 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******