BP918022 |
Clone id |
YMU001_000108_F11 |
Library |
YMU01 |
Length |
406 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000108_F11. |
Accession |
BP918022 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
- |
Sequence |
GGCCGCAGGTGGTGAGACTAATGTCGACCTTTGGGTGGATGACCATTTGTACCCGTACAA TCGTGTAAGCCGCTTCCATCCAACATTTAATAGCCTCTTGACATTTCTTCAATATGTTGG GAGGAAAGAGGCATGCTTGTTAGGTTATTGCAAGCGGTTACTCATGGGTGCAAGTGATAA TTTGCATTGGTGGATGCACCAATGTAAAGCACTTCAGCAAAATACATTGGATTTACAAGA AAGAATTGCCTCTTTGGAGAGAGAGGTTGCAATTCTCCAACAACAAATATACAAGACGGA TGTCAACATTCCAAAGCTTCGCAACACTATCGTGCACTTGAAAGAAACCCCCTTGATGAA AGAGAACACAACCGTACATTTTCATCCATTGAAACACTTGTACATA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q06VD6 |
Definition |
sp|Q06VD6|Y147_TNAVC Leucine-rich repeat structural protein ORF147 OS=Trichoplusia ni ascovirus 2c |
Align length |
91 |
Score (bit) |
36.6 |
E-value |
0.039 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918022|Adiantum capillus-veneris mRNA, clone: YMU001_000108_F11. (406 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q06VD6|Y147_TNAVC Leucine-rich repeat structural protein ORF1... 37 0.039 sp|Q16VW9|CCD22_AEDAE Coiled-coil domain-containing protein 22 h... 34 0.20 sp|Q9Z221|PMFBP_RAT Polyamine-modulated factor 1-binding protein... 34 0.26 sp|Q8TBY8|PMFBP_HUMAN Polyamine-modulated factor 1-binding prote... 34 0.26 sp|A8ER37|ISPDF_ARCB4 Bifunctional enzyme ispD/ispF OS=Arcobacte... 33 0.33 sp|Q8U378|Y593_PYRFU UPF0282 protein PF0593 OS=Pyrococcus furios... 33 0.44 sp|Q83JL2|YGIQ_SHIFL UPF0313 protein ygiQ OS=Shigella flexneri G... 32 0.97 sp|Q9WVQ0|PMFBP_MOUSE Polyamine-modulated factor 1-binding prote... 32 0.97 sp|Q2FQ56|PSMR_METHJ Proteasome-activating nucleotidase OS=Metha... 31 1.7 sp|Q8K2Y0|RN219_MOUSE RING finger protein 219 OS=Mus musculus GN... 30 2.8 sp|Q5U312|RAI14_RAT Ankycorbin OS=Rattus norvegicus GN=Rai14 PE=... 30 2.8 sp|Q6CEY7|NDC80_YARLI Probable kinetochore protein NDC80 OS=Yarr... 30 2.8 sp|Q9K8V6|CARX_BACHD Carbamoyl-phosphate synthase arginine-speci... 30 2.8 sp|Q46861|YGIQ_ECOLI UPF0313 protein ygiQ OS=Escherichia coli (s... 30 3.7 sp|Q8FDK9|YGIQ_ECOL6 UPF0313 protein ygiQ OS=Escherichia coli O6... 30 3.7 sp|Q8XBS7|YGIQ_ECO57 UPF0313 protein ygiQ OS=Escherichia coli O1... 30 3.7 sp|A8G243|SPEA_PROM2 Biosynthetic arginine decarboxylase OS=Proc... 30 3.7 sp|Q2TBX2|PFD3_BOVIN Prefoldin subunit 3 OS=Bos taurus GN=VBP1 P... 30 3.7 sp|P38252|YBT9_YEAST Putative uncharacterized protein YBR089W OS... 30 4.8 sp|Q0WKZ3|PP105_ARATH Pentatricopeptide repeat-containing protei... 30 4.8 sp|P35900|K1C20_HUMAN Keratin, type I cytoskeletal 20 OS=Homo sa... 30 4.8 sp|Q5WWG1|GSA_LEGPL Glutamate-1-semialdehyde 2,1-aminomutase OS=... 30 4.8 sp|Q5ZVA6|GSA_LEGPH Glutamate-1-semialdehyde 2,1-aminomutase OS=... 30 4.8 sp|A5IC29|GSA_LEGPC Glutamate-1-semialdehyde 2,1-aminomutase OS=... 30 4.8 sp|Q5X529|GSA_LEGPA Glutamate-1-semialdehyde 2,1-aminomutase OS=... 30 4.8 sp|Q5TBA9|FRY_HUMAN Protein furry homolog OS=Homo sapiens GN=FRY... 30 4.8 sp|Q13077|TRAF1_HUMAN TNF receptor-associated factor 1 OS=Homo s... 29 6.3 sp|Q86YM7|HOME1_HUMAN Homer protein homolog 1 OS=Homo sapiens GN... 29 6.3 sp|P97779|HMMR_RAT Hyaluronan-mediated motility receptor OS=Ratt... 29 6.3 sp|P32866|GPRK2_DROME G protein-coupled receptor kinase 2 OS=Dro... 29 6.3
>sp|Q06VD6|Y147_TNAVC Leucine-rich repeat structural protein ORF147 OS=Trichoplusia ni ascovirus 2c GN=ORF147 PE=1 SV=1 Length = 1481
Score = 36.6 bits (83), Expect = 0.039 Identities = 26/91 (28%), Positives = 41/91 (45%) Frame = +2
Query: 59 NRVSRFHPTFNSLLTFLQYVGRKEACLLGYCKRLLMGASDNLHWWMHQCKALQQNTLDLQ 238 N + + +NSL T Y L G +NL + +CK L L L+ Sbjct: 239 NEIKQIRSKYNSLETQKDYENGD----------LFAGMEENLDAAVSRCKELFDEKLRLE 288
Query: 239 ERIASLEREVAILQQQIYKTDVNIPKLRNTI 331 I L E A+ + +I++ + +I KL+NTI Sbjct: 289 NDIQRLMEEGAMNRDKIHRQNYDIEKLKNTI 319
>sp|Q16VW9|CCD22_AEDAE Coiled-coil domain-containing protein 22 homolog OS=Aedes aegypti GN=AAEL009388 PE=3 SV=1 Length = 589
Score = 34.3 bits (77), Expect = 0.20 Identities = 20/57 (35%), Positives = 30/57 (52%) Frame = +2
Query: 206 KALQQNTLDLQERIASLEREVAILQQQIYKTDVNIPKLRNTIVHLKETPLMKENTTV 376 ++LQ+ LQ+ I E L+ +TD +I + R TIV LKE +KE T + Sbjct: 291 ESLQEEIDALQQEIVQHSEEGVQLESSRKETDESIEEYRKTIVRLKEEKKIKERTHI 347
>sp|Q9Z221|PMFBP_RAT Polyamine-modulated factor 1-binding protein 1 OS=Rattus norvegicus GN=Pmfbp1 PE=2 SV=2 Length = 971
Score = 33.9 bits (76), Expect = 0.26 Identities = 19/60 (31%), Positives = 33/60 (55%) Frame = +2
Query: 143 GYCKRLLMGASDNLHWWMHQCKALQQNTLDLQERIASLEREVAILQQQIYKTDVNIPKLR 322 G C+ L A + L + K+LQ+N QER A LE E+ ++++ K ++ + KL+ Sbjct: 703 GTCQDDLTQALEKLTQATSETKSLQRNLQQTQERKAQLEDEIMAYEERMKKLNMELKKLQ 762
>sp|Q8TBY8|PMFBP_HUMAN Polyamine-modulated factor 1-binding protein 1 OS=Homo sapiens GN=PMFBP1 PE=2 SV=1 Length = 1022
Score = 33.9 bits (76), Expect = 0.26 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = +2
Query: 149 CKRLLMGASDNLHWWMHQCKALQQNTLDLQERIASLEREVAILQQQIYKTDVNIPKLR 322 C+ L A + L+ + K+LQQ+ QE+ A LE E+ ++++ K + + KLR Sbjct: 746 CQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLR 803
>sp|A8ER37|ISPDF_ARCB4 Bifunctional enzyme ispD/ispF OS=Arcobacter butzleri (strain RM4018) GN=ispDF PE=3 SV=1 Length = 374
Score = 33.5 bits (75), Expect = 0.33 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = +3
Query: 174 VIICIGGCTNVKHFSKIHWIYKKELPLWRERLQFSNNKYTRRMSTFQSFATLSCT 338 +++C G T +H +K WI ++ PLW T+R+S+F F + T Sbjct: 7 IVLCAGNSTRFEHKTKKQWIRVEDEPLWL--------NVTKRISSFAKFDKIIVT 53
>sp|Q8U378|Y593_PYRFU UPF0282 protein PF0593 OS=Pyrococcus furiosus GN=PF0593 PE=3 SV=1 Length = 310
Score = 33.1 bits (74), Expect = 0.44 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%) Frame = +2
Query: 14 ETNVDLWVDDHLYPYNRVSRFHPTFNSL----LTFLQYVGRKEACLLGYCKRL 160 ETN +L +D H+ R + FNSL LTF +++GR+ A L Y K L Sbjct: 235 ETNAELIIDHHIV---RDKGYEEFFNSLDKRPLTFAEFLGRENAPLEAYRKEL 284
>sp|Q83JL2|YGIQ_SHIFL UPF0313 protein ygiQ OS=Shigella flexneri GN=ygiQ PE=3 SV=1 Length = 739
Score = 32.0 bits (71), Expect = 0.97 Identities = 13/43 (30%), Positives = 24/43 (55%) Frame = +2
Query: 20 NVDLWVDDHLYPYNRVSRFHPTFNSLLTFLQYVGRKEACLLGY 148 N+ LW+ H + ++V F+P+ + T + Y G+K +GY Sbjct: 581 NLALWLKKHRFRLDQVQNFYPSPLANSTTMYYTGKKPLAKIGY 623
>sp|Q9WVQ0|PMFBP_MOUSE Polyamine-modulated factor 1-binding protein 1 OS=Mus musculus GN=Pmfbp1 PE=2 SV=1 Length = 1022
Score = 32.0 bits (71), Expect = 0.97 Identities = 18/60 (30%), Positives = 33/60 (55%) Frame = +2
Query: 143 GYCKRLLMGASDNLHWWMHQCKALQQNTLDLQERIASLEREVAILQQQIYKTDVNIPKLR 322 G C+ L A + L + K+L ++ QER A LE E+A ++++ K ++ + KL+ Sbjct: 755 GNCQDDLTQALEKLTQATSETKSLNRSLQQTQERKAQLEDEIAAYEERMKKLNMELKKLQ 814
>sp|Q2FQ56|PSMR_METHJ Proteasome-activating nucleotidase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=pan PE=3 SV=1 Length = 412
Score = 31.2 bits (69), Expect = 1.7 Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%) Frame = +2
Query: 164 MGASDNLHWWM-HQCKALQQNTLDLQERIASLEREVAILQQQIYKTDVNIPKLRNTIVHL 340 M D L+ ++ + ++ +L+E+I LE + ++ Q + + + KL++ I HL Sbjct: 11 MKTPDELYRYLVDRVAGMESQNQELKEQIRQLESDKRYIETQKIRYEREVRKLKSEIEHL 70
Query: 341 KETPLM 358 K PL+ Sbjct: 71 KTPPLI 76
>sp|Q8K2Y0|RN219_MOUSE RING finger protein 219 OS=Mus musculus GN=Rnf219 PE=2 SV=2 Length = 722
Score = 30.4 bits (67), Expect = 2.8 Identities = 14/45 (31%), Positives = 26/45 (57%) Frame = +2
Query: 233 LQERIASLEREVAILQQQIYKTDVNIPKLRNTIVHLKETPLMKEN 367 LQ ++ ERE L++ + ++D I +L + + HLK + KE+ Sbjct: 222 LQSKVEQYERETNRLKKALERSDKYIEELESQVAHLKHSEEAKED 266
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B1QTG9 |
Definition |
tr|B1QTG9|B1QTG9_CLOBU Putative uncharacterized protein OS=Clostridium butyricum 5521 |
Align length |
92 |
Score (bit) |
35.0 |
E-value |
1.9 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918022|Adiantum capillus-veneris mRNA, clone: YMU001_000108_F11. (406 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B1QTG9|B1QTG9_CLOBU Putative uncharacterized protein OS=Clost... 35 1.9 tr|A4QP44|A4QP44_DANRE Zgc:162848 protein OS=Danio rerio GN=zgc:... 34 3.2 tr|B7GFX1|B7GFX1_9BACI Uncharacterized conserved protein OS=Anox... 34 3.2 tr|B7WZW7|B7WZW7_COMTE FAD dependent oxidoreductase OS=Comamonas... 34 3.2 tr|A1XCE9|A1XCE9_LEUGE DNA gyrase subunit B (Fragment) OS=Leucon... 34 4.2 tr|B3KVI9|B3KVI9_HUMAN cDNA FLJ16610 fis, clone TESTI4011532, hi... 34 4.2 tr|B2RCA2|B2RCA2_HUMAN cDNA, FLJ95932, Homo sapiens polyamine mo... 34 4.2 tr|A8PRE3|A8PRE3_MALGO Putative uncharacterized protein OS=Malas... 34 4.2 tr|Q0GKD6|Q0GKD6_DANRE TANK-binding kinase 1 OS=Danio rerio GN=t... 33 5.5 tr|A3BY70|A3BY70_ORYSJ Putative uncharacterized protein OS=Oryza... 33 5.5 tr|Q6YQ93|Q6YQ93_ONYPE Putative uncharacterized protein OS=Onion... 33 7.2 tr|A5N5X2|A5N5X2_CLOK5 CarA1 OS=Clostridium kluyveri (strain ATC... 33 7.2 tr|A0KQ72|A0KQ72_AERHH Pas:GGDEF, putative OS=Aeromonas hydrophi... 33 7.2 tr|B7Y7I9|B7Y7I9_9BACI Putative uncharacterized protein OS=Geoba... 33 7.2 tr|Q7PF19|Q7PF19_ANOGA Gustatory receptor (AGAP006716-PA) OS=Ano... 33 7.2 tr|A2DNX6|A2DNX6_TRIVA Viral A-type inclusion protein, putative ... 33 7.2 tr|Q92Y82|Q92Y82_RHIME Transcriptional regulator OS=Rhizobium me... 33 9.4 tr|A9US08|A9US08_MONBE Predicted protein OS=Monosiga brevicollis... 33 9.4 tr|A0DR95|A0DR95_PARTE Chromosome undetermined scaffold_60, whol... 33 9.4
>tr|B1QTG9|B1QTG9_CLOBU Putative uncharacterized protein OS=Clostridium butyricum 5521 GN=CBY_2088 PE=4 SV=1 Length = 179
Score = 35.0 bits (79), Expect = 1.9 Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 8/92 (8%) Frame = +2
Query: 143 GYCKRLLMGASDNLHWWMHQCKALQQNTLDLQERIASL--------EREVAILQQQIYKT 298 GY KRL D L K L +N + L A+L +++V + IY Sbjct: 91 GYIKRLSRSICDTLSLHGFNIKTLGENFISL----ANLGYIPKDYKKQDVKLNFPDIY-C 145
Query: 299 DVNIPKLRNTIVHLKETPLMKENTTVHFHPLK 394 D NI KLR + + + P +K+NT + +PLK Sbjct: 146 DSNIVKLRIKSIEIWKLPTVKKNTPIQSYPLK 177
>tr|A4QP44|A4QP44_DANRE Zgc:162848 protein OS=Danio rerio GN=zgc:162848 PE=2 SV=1 Length = 450
Score = 34.3 bits (77), Expect = 3.2 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%) Frame = +2
Query: 152 KRLLMGASDNLHWWMHQC----KALQQNTLDLQERIASLEREVAILQQQIYKTDVNIPKL 319 +R+L G +++L QC +A Q +++ + LE +A + +QI + NI L Sbjct: 287 ERVLQGTTEDLR---AQCDAVDRAFTQRCVEMSQAKTQLELHLAQILEQIGAQERNISHL 343
Query: 320 RNTIVHLKETPLMKENTTVHFHPLK 394 + VH KE PL + +H+ L+ Sbjct: 344 QEA-VHDKEAPLRVAQSRLHYRTLR 367
>tr|B7GFX1|B7GFX1_9BACI Uncharacterized conserved protein OS=Anoxybacillus flavithermus WK1 GN=Aflv_0266 PE=4 SV=1 Length = 112
Score = 34.3 bits (77), Expect = 3.2 Identities = 17/58 (29%), Positives = 32/58 (55%) Frame = +2
Query: 182 LHWWMHQCKALQQNTLDLQERIASLEREVAILQQQIYKTDVNIPKLRNTIVHLKETPL 355 L+ +H+ K ++ +++R+ SLE+EV+ L+QQ+ D + L + L E L Sbjct: 6 LYDMLHEVKVPRKKVESMEKRVDSLEKEVSSLRQQVQALDEKVQALDEKMQRLDERTL 63
>tr|B7WZW7|B7WZW7_COMTE FAD dependent oxidoreductase OS=Comamonas testosteroni KF-1 GN=CtesDRAFT_PD3136 PE=4 SV=1 Length = 487
Score = 34.3 bits (77), Expect = 3.2 Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 7/74 (9%) Frame = +3
Query: 117 LGGKRHAC*VIASGYSWVQVIICIGGCTNVKHFSK-IHWIYKKELPLWRE--RLQFSNNK 287 L GKR A +I +G + VQ++ + V+HF + WI+ E P + E R +F +N+ Sbjct: 163 LDGKRIA--IIGTGSTGVQIVSALASRAKVRHFQRTAQWIFPVENPAFSEEQRAEFRSNR 220
Query: 288 ----YTRRMSTFQS 317 Y +R T+ + Sbjct: 221 DLLVYLQREPTYMA 234
>tr|A1XCE9|A1XCE9_LEUGE DNA gyrase subunit B (Fragment) OS=Leuconostoc gelidum GN=gyrB PE=3 SV=1 Length = 393
Score = 33.9 bits (76), Expect = 4.2 Identities = 15/39 (38%), Positives = 21/39 (53%) Frame = +2
Query: 272 ILQQQIYKTDVNIPKLRNTIVHLKETPLMKENTTVHFHP 388 I Q+Y D I ++ +IV L E P + T VHF+P Sbjct: 30 IRDNQVYYMDFKIGRVNTSIVKLDEEPTINRGTIVHFNP 68
>tr|B3KVI9|B3KVI9_HUMAN cDNA FLJ16610 fis, clone TESTI4011532, highly similar to Homo sapiens polyamine modulated factor 1 binding protein 1 (PMFBP1), mRNA OS=Homo sapiens PE=2 SV=1 Length = 882
Score = 33.9 bits (76), Expect = 4.2 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = +2
Query: 149 CKRLLMGASDNLHWWMHQCKALQQNTLDLQERIASLEREVAILQQQIYKTDVNIPKLR 322 C+ L A + L+ + K+LQQ+ QE+ A LE E+ ++++ K + + KLR Sbjct: 596 CQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLR 653
>tr|B2RCA2|B2RCA2_HUMAN cDNA, FLJ95932, Homo sapiens polyamine modulated factor 1 binding protein 1(PMFBP1), mRNA OS=Homo sapiens PE=2 SV=1 Length = 1007
Score = 33.9 bits (76), Expect = 4.2 Identities = 18/58 (31%), Positives = 32/58 (55%) Frame = +2
Query: 149 CKRLLMGASDNLHWWMHQCKALQQNTLDLQERIASLEREVAILQQQIYKTDVNIPKLR 322 C+ L A + L+ + K+LQQ+ QE+ A LE E+ ++++ K + + KLR Sbjct: 741 CQDDLTQALEKLNHVTSETKSLQQSLTQTQEKKAQLEEEIIAYEERMKKLNTELRKLR 798
>tr|A8PRE3|A8PRE3_MALGO Putative uncharacterized protein OS=Malassezia globosa (strain ATCC 96807 / CBS 7966) GN=MGL_0033 PE=4 SV=1 Length = 1531
Score = 33.9 bits (76), Expect = 4.2 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 9/73 (12%) Frame = +2
Query: 209 ALQQNTLDLQERIASLEREVAILQQQIYKTDV---NIPKLRNTIVHLKE------TPLMK 361 AL+ QERI LE E+A LQ QI + + LRN IV L+E + Sbjct: 1019 ALESQLHQAQERIHDLELEIATLQSQIRSLEAPESMVQSLRNEIVMLREQLSRATAENER 1078
Query: 362 ENTTVHFHPLKHL 400 TTV P H+ Sbjct: 1079 NGTTVPLGPRAHV 1091
>tr|Q0GKD6|Q0GKD6_DANRE TANK-binding kinase 1 OS=Danio rerio GN=tbk1 PE=2 SV=1 Length = 727
Score = 33.5 bits (75), Expect = 5.5 Identities = 19/63 (30%), Positives = 35/63 (55%) Frame = +2
Query: 128 EACLLGYCKRLLMGASDNLHWWMHQCKALQQNTLDLQERIASLEREVAILQQQIYKTDVN 307 + C + Y RL + S+ WM + ++++ L L + +SLE+EV +L Q++YK Sbjct: 603 DECAMKY--RLFISKSEE---WMKKFHHVRKHLLSLTGQFSSLEQEVTLLMQRLYKLLEQ 657
Query: 308 IPK 316 P+ Sbjct: 658 FPQ 660
>tr|A3BY70|A3BY70_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_027992 PE=4 SV=1 Length = 711
Score = 33.5 bits (75), Expect = 5.5 Identities = 19/75 (25%), Positives = 36/75 (48%) Frame = +2
Query: 173 SDNLHWWMHQCKALQQNTLDLQERIASLEREVAILQQQIYKTDVNIPKLRNTIVHLKETP 352 S L W Q LQ++ + + +I ++RE+A + + I +V K+ TI+ + + Sbjct: 440 SKRLEMWDRQKAKLQEDIAECKTKITQVDRELAEINKAIRNMEVFCGKVGKTIMTREIST 499
Query: 353 LMKENTTVHFHPLKH 397 + VHF + H Sbjct: 500 AAPRHLLVHFDAVIH 514
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