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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918023
Clone id YMU001_000108_F12
Library
Length 461
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_F12.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
TTTTTTTTTTAACGAGAACTAGTTGATTTCATGTTGAATATTCATTTGAATAAATCAAGA
AAATGACAGTCTCGATTTACCAATAAGACACTCGATATGATCAAATGCAGCTCCAGTGAC
CTCAATGGCTACAAAGCTGAGAGCTACCCATAAACCCTGTAAACGTGATATTCAAGGACC
CTCTAGATGAAGAGTGCAAGTTCCATTAATATCGTCGTTCTCCCGTCCCGCCCAAGCACA
AGTGACTTGCACATGGGCTCCATACCAAAAGTTAGCTGACCTAACGTGCATGATAACTAA
CTTGACTCAACGGTTTGCATAGCAATGAATTGGCTTGCATAAAGCCACAAGACTAGGCTC
CTCATCTTTGTAACATACGCGAGGATGTTGCTTTGAATTGGAGGAGAGCACAATTACTGC
CTCCTTCAATTTTGTCCGAGATTTGTACATAAAGTCCCTCA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918023|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_F12.
         (451 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id A7HR67
Definition tr|A7HR67|A7HR67_PARL1 Beta-lactamase domain protein OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966)
Align length 125
Score (bit) 32.7
E-value 9.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918023|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_F12.
         (451 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7HR67|A7HR67_PARL1 Beta-lactamase domain protein OS=Parvibac...    33   9.4  

>tr|A7HR67|A7HR67_PARL1 Beta-lactamase domain protein
           OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023
           / NCIMB 13966) GN=Plav_0777 PE=4 SV=1
          Length = 352

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 35/125 (28%), Positives = 53/125 (42%), Gaps = 8/125 (6%)
 Frame = -3

Query: 398 LSSNSKQHPRVCYKDEEPSLVALCKPIHCYANR*VKLVIMHVRSANFWYGAHVQVTCAWA 219
           +SSN   HP   Y++     +  CK +   A     L+++   +  F YG H ++T    
Sbjct: 225 ISSNVSVHPTEAYENPLEDWIDSCKRLR--ATLPEDLLVLPAHNEPF-YGLHTRLTQLID 281

Query: 218 GRENDDINGTCTLH--LEGP*ISRLQGLWVAL------SFVAIEVTGAAFDHIECLIGKS 63
           G E+    G   LH  LE P   R   ++ AL        V    TG +  H+ CLIG+ 
Sbjct: 282 GHED----GLAKLHALLETP--KRAIDVFPALFKRKIGPEVFFMATGESLAHLNCLIGRG 335

Query: 62  RLSFS 48
             + S
Sbjct: 336 LATLS 340