NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918026
Clone id YMU001_000108_G03
Library
Length 468
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_G03.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
ATTTGTGAATCTGTATGCTACCATGTTTGTTTCATGACTCCTTGTCATTTTAGAAAGCAT
CCATACTTGCCTTTACACACTGGTTATACTCCTGCACAGCTTCAAATCTGTGCCTCGGAG
CCACCTCGCTTCTTGCCCAGGCCTAGAAGCCTCCGACATGCCCGTAGAATTCCATTCTTC
TTCTTTGTCGTGGTGGCCATTCCTCCTTGTGTAGAGGCAGCCCGATTCGCTGCACAACAA
GAGCAAAAACAGAGTAGTCGGCCACCCGCACCATGCAATGCAGCTCCGCACGCCGCGCAT
TCCATGACCAACCCCATCCGAGTGTCGCGCATGGATAAGGACCGACCCAACAAAGACCTA
CAGTAAGCCGGCGCTGCGAAAGTGCCACCACTCGCATGCGGTTGCACATTGACGTATCCA
CTTTTTGTATATACTGCCCATTCATCCTCATTGAATGCTCCATTTCCA
■■Homology search results ■■ -
sp_hit_id P25960
Definition sp|P25960|LEP4_ECOLI Type 4 prepilin-like proteins leader peptide-processing enzyme OS=Escherichia coli (strain K12)
Align length 39
Score (bit) 33.9
E-value 0.37
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918026|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_G03.
         (468 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P25960|LEP4_ECOLI Type 4 prepilin-like proteins leader peptid...    34   0.37 
sp|P46567|SRG13_CAEEL Serpentine receptor class gamma-13 OS=Caen...    31   2.3  
sp|Q7S7C5|PFA3_NEUCR Palmitoyltransferase PFA3 OS=Neurospora cra...    31   3.1  
sp|Q7UQL3|SERC_RHOBA Phosphoserine aminotransferase OS=Rhodopire...    31   3.1  
sp|Q1MKX9|HISZ_RHIL3 ATP phosphoribosyltransferase regulatory su...    30   5.2  
sp|Q9W4T0|PDE4D_DROME cAMP-specific 3',5'-cyclic phosphodiestera...    30   5.3  
sp|Q96MG7|MAGG1_HUMAN Melanoma-associated antigen G1 OS=Homo sap...    30   5.3  
sp|A1CTP5|PMIP_ASPCL Mitochondrial intermediate peptidase OS=Asp...    29   8.9  
sp|Q63072|BST1_RAT ADP-ribosyl cyclase 2 OS=Rattus norvegicus GN...    29   8.9  

>sp|P25960|LEP4_ECOLI Type 4 prepilin-like proteins leader
           peptide-processing enzyme OS=Escherichia coli (strain
           K12) GN=hofD PE=1 SV=2
          Length = 225

 Score = 33.9 bits (76), Expect = 0.37
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 324 HSDGVGHG-MRGVRSCIAWCGWPTTLFLLLLCSESGCLY 211
           H +G+G+G  + + +  AWCGW T   +LL+ S  G  Y
Sbjct: 150 HKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGY 188


>sp|P46567|SRG13_CAEEL Serpentine receptor class gamma-13
           OS=Caenorhabditis elegans GN=srg-13 PE=2 SV=1
          Length = 336

 Score = 31.2 bits (69), Expect = 2.3
 Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
 Frame = +2

Query: 11  LYATMFVS*LLVILESIHTCLYTLVILLHSFKSVPRSHLASCP--GLEASDMPVE----- 169
           L+ T F+  L++I+      LY L+IL H  KS  ++   +     LE S + V      
Sbjct: 205 LHLTYFIVSLILIIVISGVTLYALLILKHRIKSAEQTLTIATMVLSLEFSFLSVIQIYFA 264

Query: 170 -FHSSSLSWWPFLL 208
            F SS+  W PFLL
Sbjct: 265 FFSSSTSEWRPFLL 278


>sp|Q7S7C5|PFA3_NEUCR Palmitoyltransferase PFA3 OS=Neurospora crassa
           GN=pfa-3 PE=3 SV=2
          Length = 598

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 349 WVGPYP-CATLGWGWSWNARRAELHCMVRVA 260
           W+ P+P C T+G GWSW      +    R+A
Sbjct: 362 WLWPFPVCTTIGDGWSWEPNPKWIEARDRIA 392


>sp|Q7UQL3|SERC_RHOBA Phosphoserine aminotransferase
           OS=Rhodopirellula baltica GN=serC PE=3 SV=2
          Length = 376

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 213 YTRRNGHHDKEEEWNSTGMSEASRPGQEARWLR 115
           Y     HHD + EWN+         G+ ARWLR
Sbjct: 237 YLHFKNHHDNDSEWNTPPTFAIYVLGKVARWLR 269


>sp|Q1MKX9|HISZ_RHIL3 ATP phosphoribosyltransferase regulatory
           subunit OS=Rhizobium leguminosarum bv. viciae (strain
           3841) GN=hisZ PE=3 SV=1
          Length = 373

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 20/56 (35%), Positives = 30/56 (53%)
 Frame = -3

Query: 280 HCMVRVADYSVFALVVQRIGLPLHKEEWPPRQRRRMEFYGHVGGF*AWARSEVAPR 113
           H  V + D +VF  VVQ +GLPL    W   Q+R +  +G++    A   S V+P+
Sbjct: 137 HLAVTLGDQAVFEAVVQALGLPL---GW---QKRLIHAFGNMTQLEALLASLVSPQ 186


>sp|Q9W4T0|PDE4D_DROME cAMP-specific 3',5'-cyclic phosphodiesterase,
           isoform M OS=Drosophila melanogaster GN=dnc PE=2 SV=2
          Length = 903

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = -1

Query: 327 RHSDGVGHGMRGVRSCIAWCGWPTTLFLLLLCSESGCLYTRRNGHHDKEEEWNSTGMSEA 148
           ++S G   G  G  S   WCG      + ++CS   C Y  RN   D E    +    E 
Sbjct: 175 QNSSGTLTGSSGNTSTSTWCG-SINFLVYMVCSFCCCCYNFRNSPFDVENGQGARSPLEG 233

Query: 147 SRP 139
             P
Sbjct: 234 GSP 236


>sp|Q96MG7|MAGG1_HUMAN Melanoma-associated antigen G1 OS=Homo
           sapiens GN=NDNL2 PE=1 SV=1
          Length = 304

 Score = 30.0 bits (66), Expect = 5.3
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -1

Query: 207 RRNGHHDKEEEWNSTGMSEASRPGQEARWLR 115
           R  G  +++ +W+ +G   ASR G++AR LR
Sbjct: 10  RSGGQAERDRDWSHSGNPGASRAGEDARVLR 40


>sp|A1CTP5|PMIP_ASPCL Mitochondrial intermediate peptidase
           OS=Aspergillus clavatus GN=oct1 PE=3 SV=1
          Length = 801

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
 Frame = +3

Query: 219 SPIRCTTRAKTE*SATRTMQCSSARRAFHDQPHPSVAHG*GPT----QQRPTVSRRCESA 386
           +P   T R   E SAT   +C+S  ++ H  P+  +A    PT    +Q PT++  C+ A
Sbjct: 486 NPAHFTLRCSREISATEVAECASLDQSSH--PNDGMATAVDPTTKTLRQLPTIALVCDFA 543


>sp|Q63072|BST1_RAT ADP-ribosyl cyclase 2 OS=Rattus norvegicus
           GN=Bst1 PE=2 SV=1
          Length = 319

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 26/102 (25%), Positives = 40/102 (39%), Gaps = 18/102 (17%)
 Frame = -3

Query: 304 WNARRAELH---CMVRVADYSVFALVVQRIGLPLHKE-----------EWPPRQRRRMEF 167
           W A +  L    C V  +DY +F + + R  +P  K             +    RR M  
Sbjct: 72  WEAFKVVLDKDPCSVLPSDYDLF-INLSRHAIPRDKSLFWENNHLLVMSYAENTRRLMPL 130

Query: 166 ----YGHVGGF*AWARSEVAPRHRFEAVQEYNQCVKASMDAF 53
               YG VG F +W R E A    +++      C   ++DA+
Sbjct: 131 CDVLYGKVGDFLSWCRQENASGLDYQSCPTAEDCENNAVDAY 172
tr_hit_id O53120
Definition tr|O53120|O53120_MYCLE Putative uncharacterized protein MLCB1913.12 (Putative uncharacterized protein ML2678) OS=Mycobacterium leprae
Align length 65
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918026|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_G03.
         (468 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|O53120|O53120_MYCLE Putative uncharacterized protein MLCB1913...    34   3.2  
tr|B8ZTL1|B8ZTL1_MYCLE Putative uncharacterized protein OS=Mycob...    34   3.2  
tr|Q8FCY7|Q8FCY7_ECOL6 Type 4 prepilin-like proteins leader pept...    34   4.2  
tr|Q1R5Y7|Q1R5Y7_ECOUT Type 4 prepilin-like proteins leader pept...    34   4.2  
tr|Q0TCC4|Q0TCC4_ECOL5 Type 4 prepilin-like proteins leader pept...    34   4.2  
tr|B1X6I6|B1X6I6_ECODH Bifunctional prepilin leader peptidase an...    34   4.2  
tr|B1IPW4|B1IPW4_ECOLC Peptidase A24A prepilin type IV OS=Escher...    34   4.2  
tr|A8A5E0|A8A5E0_ECOHS Type 4 prepilin peptidase OS=Escherichia ...    34   4.2  
tr|A1AGM3|A1AGM3_ECOK1 Type 4 prepilin-like proteins leader pept...    34   4.2  
tr|B7MCV0|B7MCV0_ECOLX Bifunctional prepilin leader peptidase an...    34   4.2  
tr|B3XK74|B3XK74_ECOLX Type 4 prepilin peptidase OS=Escherichia ...    34   4.2  
tr|B3X6V0|B3X6V0_SHIDY Type 4 prepilin peptidase OS=Shigella dys...    34   4.2  
tr|B3HQS8|B3HQS8_ECOLX Type 4 prepilin peptidase OS=Escherichia ...    34   4.2  
tr|B2N948|B2N948_ECOLX Type 4 prepilin peptidase OS=Escherichia ...    34   4.2  
tr|Q0UPR4|Q0UPR4_PHANO Putative uncharacterized protein OS=Phaeo...    33   5.5  
tr|Q6Y3I1|Q6Y3I1_MAIZE Multidrug resistance associated protein 1...    33   7.1  
tr|A5DQI6|A5DQI6_PICGU Putative uncharacterized protein OS=Pichi...    33   9.4  

>tr|O53120|O53120_MYCLE Putative uncharacterized protein MLCB1913.12
           (Putative uncharacterized protein ML2678)
           OS=Mycobacterium leprae GN=MLCB1913.12 PE=4 SV=1
          Length = 1000

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = +3

Query: 198 HSSLCRGSPIRCTTRAKTE*SATRTMQCSSARRAFHDQPHPSVAHG*GPTQQRPTVSRRC 377
           +S  C   P +C +  + +   TR+  CS  R A+  QPH  +     PT Q PT ++RC
Sbjct: 251 NSPTCTPGP-KCPSPVRAKSGWTRSRGCSPTRSAYRWQPHHILRRQRRPTAQ-PTRAKRC 308

Query: 378 ESATT 392
            ++ T
Sbjct: 309 WTSLT 313


>tr|B8ZTL1|B8ZTL1_MYCLE Putative uncharacterized protein
           OS=Mycobacterium leprae Br4923 GN=MLBr02678 PE=4 SV=1
          Length = 1000

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 21/65 (32%), Positives = 33/65 (50%)
 Frame = +3

Query: 198 HSSLCRGSPIRCTTRAKTE*SATRTMQCSSARRAFHDQPHPSVAHG*GPTQQRPTVSRRC 377
           +S  C   P +C +  + +   TR+  CS  R A+  QPH  +     PT Q PT ++RC
Sbjct: 251 NSPTCTPGP-KCPSPVRAKSGWTRSRGCSPTRSAYRWQPHHILRRQRRPTAQ-PTRAKRC 308

Query: 378 ESATT 392
            ++ T
Sbjct: 309 WTSLT 313


>tr|Q8FCY7|Q8FCY7_ECOL6 Type 4 prepilin-like proteins leader peptide
           processing enzyme OS=Escherichia coli O6 GN=hofD PE=3
           SV=1
          Length = 225

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 324 HSDGVGHG-MRGVRSCIAWCGWPTTLFLLLLCSESGCLY 211
           H +G+G+G  + + +  AWCGW T   +LL+ S  G  Y
Sbjct: 150 HKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGY 188


>tr|Q1R5Y7|Q1R5Y7_ECOUT Type 4 prepilin-like proteins leader peptide
           processing enzyme OS=Escherichia coli (strain UTI89 /
           UPEC) GN=hofD PE=3 SV=1
          Length = 225

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 324 HSDGVGHG-MRGVRSCIAWCGWPTTLFLLLLCSESGCLY 211
           H +G+G+G  + + +  AWCGW T   +LL+ S  G  Y
Sbjct: 150 HKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGY 188


>tr|Q0TCC4|Q0TCC4_ECOL5 Type 4 prepilin-like proteins leader peptide
           processing enzyme OS=Escherichia coli O6:K15:H31 (strain
           536 / UPEC) GN=ECP_3425 PE=3 SV=1
          Length = 225

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 324 HSDGVGHG-MRGVRSCIAWCGWPTTLFLLLLCSESGCLY 211
           H +G+G+G  + + +  AWCGW T   +LL+ S  G  Y
Sbjct: 150 HKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGY 188


>tr|B1X6I6|B1X6I6_ECODH Bifunctional prepilin leader peptidase and
           methylase OS=Escherichia coli (strain DH10B) GN=gspO
           PE=4 SV=1
          Length = 225

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 324 HSDGVGHG-MRGVRSCIAWCGWPTTLFLLLLCSESGCLY 211
           H +G+G+G  + + +  AWCGW T   +LL+ S  G  Y
Sbjct: 150 HKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGY 188


>tr|B1IPW4|B1IPW4_ECOLC Peptidase A24A prepilin type IV
           OS=Escherichia coli (strain ATCC 8739 / DSM 1576 /
           Crooks) GN=EcolC_0378 PE=3 SV=1
          Length = 225

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 324 HSDGVGHG-MRGVRSCIAWCGWPTTLFLLLLCSESGCLY 211
           H +G+G+G  + + +  AWCGW T   +LL+ S  G  Y
Sbjct: 150 HKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGY 188


>tr|A8A5E0|A8A5E0_ECOHS Type 4 prepilin peptidase OS=Escherichia
           coli O9:H4 (strain HS) GN=gspO PE=3 SV=1
          Length = 225

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 324 HSDGVGHG-MRGVRSCIAWCGWPTTLFLLLLCSESGCLY 211
           H +G+G+G  + + +  AWCGW T   +LL+ S  G  Y
Sbjct: 150 HKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGY 188


>tr|A1AGM3|A1AGM3_ECOK1 Type 4 prepilin-like proteins leader peptide
           processing enzyme OS=Escherichia coli O1:K1 / APEC
           GN=hofD PE=3 SV=1
          Length = 225

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 324 HSDGVGHG-MRGVRSCIAWCGWPTTLFLLLLCSESGCLY 211
           H +G+G+G  + + +  AWCGW T   +LL+ S  G  Y
Sbjct: 150 HKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGY 188


>tr|B7MCV0|B7MCV0_ECOLX Bifunctional prepilin leader peptidase and
           methylase OS=Escherichia coli GN=gspO PE=4 SV=1
          Length = 225

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -1

Query: 324 HSDGVGHG-MRGVRSCIAWCGWPTTLFLLLLCSESGCLY 211
           H +G+G+G  + + +  AWCGW T   +LL+ S  G  Y
Sbjct: 150 HKEGLGYGDFKLLAAAGAWCGWQTLPMILLIASLGGIGY 188