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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918028
Clone id YMU001_000108_G06
Library
Length 435
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_G06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CGGTGCACGAGAAAGGGCAGGTATCGAAGCGGCTGGAAGAGCTTACATTTGAGTATGAGC
AGATGAACAATCCCTCTCAGGAGTCTAGCACAAGCTTGAAGACGATCAGACTACGAGGTT
TGCCAAAGTTGTGCTGAGGGGTGAAAGGTTCTGTTGACGAGCCGTATTGAGGATTGTCGT
GATGGTGATCGATGACAGAATGTGTAATGAATCCCATTATATCTGCATGGAAAATCGTCA
AGAAAGTCGTGATCTGCTTAATCTTCGGCAAGTTGTCAAAACTACCTCTCTGCTATTAAG
TAACTTCATTGATTCATTTTAAGTGGTATAGGATGACTAGGGTATCTTAAAGAGGAAGGA
TTGTAGGTATCTTTCCAAAAGATTGAGCTAAGCGCTCTATGGTTACTACCGCATATCGTA
AAATAGTTGGGGGTC
■■Homology search results ■■ -
sp_hit_id P20221
Definition sp|P20221|F92_SSV1 Uncharacterized protein F-92 OS=Sulfolobus virus-like particle SSV1
Align length 51
Score (bit) 30.0
E-value 4.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918028|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_G06.
         (435 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P20221|F92_SSV1 Uncharacterized protein F-92 OS=Sulfolobus vi...    30   4.3  
sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3 ...    30   5.6  
sp|Q9LX31|GUN4C_ARATH Tetrapyrrole-binding protein, chloroplasti...    30   5.6  
sp|Q8DPZ9|DAPA_STRR6 Dihydrodipicolinate synthase OS=Streptococc...    29   9.6  
sp|Q04KR9|DAPA_STRP2 Dihydrodipicolinate synthase OS=Streptococc...    29   9.6  

>sp|P20221|F92_SSV1 Uncharacterized protein F-92 OS=Sulfolobus
           virus-like particle SSV1 GN=f92 PE=4 SV=1
          Length = 92

 Score = 30.0 bits (66), Expect = 4.3
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +3

Query: 12  KGQVSKRLEELTFEYEQMNNPSQESSTSLKTIRL-RGLPKLC*GVKGSVDE 161
           KG++ K+LEE   E E++    +E       +RL RG+P     +KG +DE
Sbjct: 28  KGKLEKKLEERLKELEKLEELEKELEKIENELRLMRGVPLDLTDIKGKLDE 78


>sp|Q14149|MORC3_HUMAN MORC family CW-type zinc finger protein 3
           OS=Homo sapiens GN=MORC3 PE=1 SV=3
          Length = 939

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +3

Query: 9   EKGQVSKRLEELTFEYEQMNNPSQESSTSLKT 104
           EK Q+  + EEL  E EQ+ + +Q+++T + T
Sbjct: 843 EKSQIRSQCEELKTEVEQLKSTNQQTATDVST 874


>sp|Q9LX31|GUN4C_ARATH Tetrapyrrole-binding protein, chloroplastic
           OS=Arabidopsis thaliana GN=GUN4 PE=1 SV=1
          Length = 265

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 7/65 (10%)
 Frame = -3

Query: 205 THSVIDHHHDNPQYGSSTEPFTPQHNFG-------KPRSLIVFKLVLDS*EGLFICSYSN 47
           T+S+  HHH +P Y         Q +FG       +P S   F L         ICS S+
Sbjct: 4   TNSLHHHHHSSPSYTHHRNNLHCQSHFGPTSLSLKQPTSAATFSL---------ICSASS 54

Query: 46  VSSSS 32
            SSS+
Sbjct: 55  TSSST 59


>sp|Q8DPZ9|DAPA_STRR6 Dihydrodipicolinate synthase OS=Streptococcus
           pneumoniae (strain ATCC BAA-255 / R6) GN=dapA PE=3 SV=1
          Length = 311

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
 Frame = -3

Query: 283 SFDNLPKIKQITTFLTIFHAD-------IMGFITHSVIDHHHD 176
           S+ +L + K IT F+T FH D       I   I H ++DHH D
Sbjct: 2   SYQDLKECKIITAFITPFHEDGSINFDAIPALIEH-LLDHHTD 43


>sp|Q04KR9|DAPA_STRP2 Dihydrodipicolinate synthase OS=Streptococcus
           pneumoniae serotype 2 (strain D39 / NCTC 7466) GN=dapA
           PE=3 SV=1
          Length = 311

 Score = 28.9 bits (63), Expect = 9.6
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
 Frame = -3

Query: 283 SFDNLPKIKQITTFLTIFHAD-------IMGFITHSVIDHHHD 176
           S+ +L + K IT F+T FH D       I   I H ++DHH D
Sbjct: 2   SYQDLKECKIITAFITPFHEDGSINFDAIPALIEH-LLDHHTD 43
tr_hit_id A2DPD8
Definition tr|A2DPD8|A2DPD8_TRIVA Putative uncharacterized protein OS=Trichomonas vaginalis G3
Align length 61
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918028|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_G06.
         (435 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2DPD8|A2DPD8_TRIVA Putative uncharacterized protein OS=Trich...    35   2.4  
tr|Q4RPE5|Q4RPE5_TETNG Chromosome 1 SCAF15008, whole genome shot...    34   4.2  
tr|A7F4U7|A7F4U7_SCLS1 Putative uncharacterized protein OS=Scler...    33   7.1  
tr|B2SZH0|B2SZH0_BURPP Short-chain dehydrogenase/reductase SDR O...    33   9.3  
tr|B1G904|B1G904_9BURK Short-chain dehydrogenase/reductase SDR O...    33   9.3  
tr|A4HP93|A4HP93_LEIBR Putative uncharacterized protein OS=Leish...    33   9.3  

>tr|A2DPD8|A2DPD8_TRIVA Putative uncharacterized protein
           OS=Trichomonas vaginalis G3 GN=TVAG_169940 PE=4 SV=1
          Length = 629

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 16/61 (26%), Positives = 34/61 (55%)
 Frame = -3

Query: 277 DNLPKIKQITTFLTIFHADIMGFITHSVIDHHHDNPQYGSSTEPFTPQHNFGKPRSLIVF 98
           D+LP  + + ++  IFH +I  +I  S +++ + N +Y    + FT Q++  K   ++ +
Sbjct: 114 DSLPSSESLNSYTLIFHPNIFVYIAQSELEYANANLKYTPVAQKFTIQNSDIKNIQIVKY 173

Query: 97  K 95
           K
Sbjct: 174 K 174


>tr|Q4RPE5|Q4RPE5_TETNG Chromosome 1 SCAF15008, whole genome shotgun
           sequence OS=Tetraodon nigroviridis GN=GSTENG00031149001
           PE=4 SV=1
          Length = 252

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 27  KRLEELTFEYEQMNNPSQESSTSLKTIRLRGLPKLC 134
           +R++ LT  YE+  +PS E   S  T  LRG PK C
Sbjct: 37  RRIKVLTSNYEESTSPSPERPRSSHTTVLRGEPKFC 72


>tr|A7F4U7|A7F4U7_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_12622 PE=3 SV=1
          Length = 478

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
 Frame = -3

Query: 280 FDNLPKIKQITTFLTIFHADIMGFITHSVIDHHHDN---PQYG-SSTEPFTPQHN 128
           F+ LPK+K   TF   + + I+G+ T      H  N    Q G SSTEP+T  HN
Sbjct: 155 FEALPKVKNWITFNEPWCSSILGYSTGLFAPGHTSNKLRSQIGDSSTEPWTVGHN 209


>tr|B2SZH0|B2SZH0_BURPP Short-chain dehydrogenase/reductase SDR
           OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN)
           GN=Bphyt_2764 PE=4 SV=1
          Length = 258

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 193 IDHHHDNPQYGSSTEPFTPQHNFGKPRSLIVFKLVLDS*EGLFI 62
           I+HHH + + G       P+H  GKP  L    L+L + E  FI
Sbjct: 201 INHHHWSTEQGQKLVSMLPRHRVGKPEDLDGLLLLLAADESQFI 244


>tr|B1G904|B1G904_9BURK Short-chain dehydrogenase/reductase SDR
           OS=Burkholderia graminis C4D1M GN=BgramDRAFT_5862 PE=3
           SV=1
          Length = 258

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -3

Query: 193 IDHHHDNPQYGSSTEPFTPQHNFGKPRSLIVFKLVLDS*EGLFI 62
           I+HHH + + G       P+H  GKP  L    L+L + E  FI
Sbjct: 201 INHHHWSTEQGQKLVSMLPRHRVGKPEDLDGLLLLLAADESQFI 244


>tr|A4HP93|A4HP93_LEIBR Putative uncharacterized protein OS=Leishmania
            braziliensis GN=LbrM35_V2.2480 PE=4 SV=1
          Length = 2623

 Score = 32.7 bits (73), Expect = 9.3
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = -3

Query: 265  KIKQITTFLTIFHADIMGFITHSVIDHHHDNPQYGSSTEPFTPQHNFGKPRSLI 104
            +++ +     + HA++ G  +HSV     +  Q+G+  EPFTP     + R+++
Sbjct: 1358 ELRDVYMIRAVGHAEVQGAASHSV----EETEQHGTDGEPFTPSAAIAQMRAVV 1407