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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918029
Clone id YMU001_000108_G07
Library
Length 519
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_G07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GAATAACGTGCTGTGGATTCAGATGCGGGTGCAAGCGATGTGAATTTGAGCGTTCTGTAG
AGAGCGAAATTGAGGATATAAGTGAGCGATATGAGGCTCTATATGATAAGGCAGCAGAGG
AGGTTACTGCCGTAGCAACCAGCAGATACCCAGGACCATATCCTGCATGCAAGGAGCTTG
CGGAGCTTTTTGATTGCTTGAAAAGGAAATTAGGCCCTATGGAGAAACTGACAAAGCTGC
AAAAGCAATGGATTTTGGGTGGTTACTCGTGTGCTTTTCTAGGAAACTGGCTTACTACTG
GCTACATGTATGACTTCGGTCCCCCTTGTGAGCACTTGAATTTTACTGCGATGGAGCTTG
TAGAGGCCATGAAAGCTACTGTACCTGGCATGCAACGCACCTTGTCGTTTACTGTGCTTC
TGGCCACTGCAATGCAAAACTCGGCAGGCAGGGCCAAGCTGGTCGAGCTTGCAATTGATG
AATGTGTCAAATTGTATGGAAAGCAACGGCCCGATGTTC
■■Homology search results ■■ -
sp_hit_id Q6PCR6
Definition sp|Q6PCR6|ZFR_DANRE Zinc finger RNA-binding protein OS=Danio rerio
Align length 33
Score (bit) 31.2
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918029|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_G07.
         (519 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6PCR6|ZFR_DANRE Zinc finger RNA-binding protein OS=Danio rer...    31   3.0  
sp|P96130|RECG_TREPA ATP-dependent DNA helicase recG OS=Treponem...    31   3.0  
sp|Q4W5Z4|DNM3A_CHICK DNA (cytosine-5)-methyltransferase 3A OS=G...    31   3.0  
sp|Q96KR1|ZFR_HUMAN Zinc finger RNA-binding protein OS=Homo sapi...    31   4.0  
sp|Q5U231|ZFR_XENTR Zinc finger RNA-binding protein OS=Xenopus t...    30   5.2  
sp|Q6GPM1|ZFR_XENLA Zinc finger RNA-binding protein OS=Xenopus l...    30   5.2  
sp|Q5REX3|ZFR_PONAB Zinc finger RNA-binding protein OS=Pongo abe...    30   5.2  
sp|O88532|ZFR_MOUSE Zinc finger RNA-binding protein OS=Mus muscu...    30   5.2  
sp|P52522|VU5_HHV7J Protein U5 OS=Human herpesvirus 7 (strain JI...    30   5.2  
sp|Q9C9H9|PP114_ARATH Pentatricopeptide repeat-containing protei...    30   5.2  
sp|Q9ZUM9|ASHR2_ARATH Histone-lysine N-methyltransferase ASHR2 O...    30   5.2  
sp|Q4ZZ58|Y494_PSEU2 UPF0061 protein Psyr_0494 OS=Pseudomonas sy...    30   8.8  
sp|Q48P81|Y485_PSE14 UPF0061 protein PSPPH_0485 OS=Pseudomonas s...    30   8.8  
sp|Q9PUG9|PA215_AUSSU Phospholipase A2 isozyme S12-65J OS=Austre...    30   8.8  
sp|Q9PUH0|PA214_AUSSU Phospholipase A2 isozyme S8-51 OS=Austrela...    30   8.8  
sp|Q9PUH1|PA213_AUSSU Phospholipase A2 isozyme S14-72F OS=Austre...    30   8.8  
sp|Q9PUH2|PA212_AUSSU Phospholipase A2 isozyme S4-30 OS=Austrela...    30   8.8  
sp|Q9PUH3|PA211_AUSSU Phospholipase A2 isozyme S13-69J OS=Austre...    30   8.8  
sp|Q5NZG2|LPXB_AZOSE Lipid-A-disaccharide synthase OS=Azoarcus s...    30   8.8  
sp|P61033|LNT_BORPA Putative apolipoprotein N-acyltransferase OS...    30   8.8  
sp|Q7WMN7|LNT_BORBR Apolipoprotein N-acyltransferase OS=Bordetel...    30   8.8  
sp|A5GLH7|KSGA_SYNPW Dimethyladenosine transferase OS=Synechococ...    30   8.8  

>sp|Q6PCR6|ZFR_DANRE Zinc finger RNA-binding protein OS=Danio rerio
           GN=zfr PE=2 SV=2
          Length = 1074

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 14/33 (42%), Positives = 17/33 (51%)
 Frame = -2

Query: 473 CKLDQLGPACRVLHCSGQKHSKRQGALHARYSS 375
           CK+   GP     H  GQKH K++ AL    SS
Sbjct: 329 CKISCAGPQTYKEHLEGQKHKKKEAALKVSQSS 361


>sp|P96130|RECG_TREPA ATP-dependent DNA helicase recG OS=Treponema
           pallidum GN=recG PE=3 SV=1
          Length = 686

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +3

Query: 183 ELFDCLKRKLGPMEKLTKLQKQWILGGYSCAFLGNWLTT 299
           E  DC+++K+ P+  LTK  KQ  L    CA +  W+ T
Sbjct: 134 EKIDCIEKKILPVYPLTKGLKQMKLRMLICAAMDQWIGT 172


>sp|Q4W5Z4|DNM3A_CHICK DNA (cytosine-5)-methyltransferase 3A
           OS=Gallus gallus GN=DNMT3A PE=2 SV=1
          Length = 877

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 24/71 (33%), Positives = 32/71 (45%)
 Frame = +3

Query: 54  SVESEIEDISERYEALYDKAAEEVTAVATSRYPGPYPACKELAELFDCLKRKLGPMEKLT 233
           S  S     +   + +Y KA  EV  VA+SR    +PAC E  E  D  K     +E   
Sbjct: 314 SFSSAFHQATYNKQPMYRKAIYEVLQVASSRAGKIFPACPENDET-DTSK----VVEIQN 368

Query: 234 KLQKQWILGGY 266
           K   +W LGG+
Sbjct: 369 KQMIEWALGGF 379


>sp|Q96KR1|ZFR_HUMAN Zinc finger RNA-binding protein OS=Homo sapiens
           GN=ZFR PE=1 SV=2
          Length = 1074

 Score = 30.8 bits (68), Expect = 4.0
 Identities = 18/53 (33%), Positives = 24/53 (45%)
 Frame = -2

Query: 473 CKLDQLGPACRVLHCSGQKHSKRQGALHARYSSFHGLYKLHRSKIQVLTRGTE 315
           CK+   GP     H  GQKH K++ AL A  ++         S     TRGT+
Sbjct: 336 CKISCAGPQTYKEHLEGQKHKKKEAALKASQNT---------SSSNSSTRGTQ 379


>sp|Q5U231|ZFR_XENTR Zinc finger RNA-binding protein OS=Xenopus
           tropicalis GN=zfr PE=2 SV=1
          Length = 1065

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 473 CKLDQLGPACRVLHCSGQKHSKRQGALHA 387
           CK+   GP     H  GQKH K++ AL A
Sbjct: 336 CKISCAGPQTYKEHLEGQKHKKKEAALKA 364


>sp|Q6GPM1|ZFR_XENLA Zinc finger RNA-binding protein OS=Xenopus
           laevis GN=zfr PE=2 SV=1
          Length = 1054

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 473 CKLDQLGPACRVLHCSGQKHSKRQGALHA 387
           CK+   GP     H  GQKH K++ AL A
Sbjct: 327 CKISCAGPQTYKEHLEGQKHKKKEAALKA 355


>sp|Q5REX3|ZFR_PONAB Zinc finger RNA-binding protein OS=Pongo abelii
           GN=ZFR PE=2 SV=1
          Length = 1074

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 473 CKLDQLGPACRVLHCSGQKHSKRQGALHA 387
           CK+   GP     H  GQKH K++ AL A
Sbjct: 336 CKISCAGPQTYKEHLEGQKHKKKEAALKA 364


>sp|O88532|ZFR_MOUSE Zinc finger RNA-binding protein OS=Mus musculus
           GN=Zfr PE=1 SV=2
          Length = 1074

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -2

Query: 473 CKLDQLGPACRVLHCSGQKHSKRQGALHA 387
           CK+   GP     H  GQKH K++ AL A
Sbjct: 336 CKISCAGPQTYKEHLEGQKHKKKEAALKA 364


>sp|P52522|VU5_HHV7J Protein U5 OS=Human herpesvirus 7 (strain JI)
           GN=U5 PE=3 SV=1
          Length = 865

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
 Frame = +3

Query: 69  IEDISERYEALYDKAAEEVTAVATSRYPGPYPA----CKELAELFDCLKRKL-GPMEKLT 233
           +ED   +++ +   AA    + A+    G  P     C+ L E    L  KL G +++L+
Sbjct: 431 MEDFDPKWQCITKLAAVGFYSGASLFNLGAKPGIGYWCRYLCEYLSMLFFKLDGKLKELS 490

Query: 234 KLQKQWILGGYSCAF 278
           K  KQ  LGG+SCAF
Sbjct: 491 KESKQK-LGGFSCAF 504


>sp|Q9C9H9|PP114_ARATH Pentatricopeptide repeat-containing protein
           At1g71420 OS=Arabidopsis thaliana GN=PCMP-H70 PE=2 SV=1
          Length = 745

 Score = 30.4 bits (67), Expect = 5.2
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 11/68 (16%)
 Frame = -3

Query: 505 CFPYNLTHSSIASST-----------SLALPAEFCIAVARSTVNDKVRCMPGTVAFMAST 359
           CFP   T SS+ +S            +L L     I VA + ++   RC  G  A+ A T
Sbjct: 157 CFPNEFTLSSVLTSCRYEPGKQVHGLALKLGLHCSIYVANAVISMYGRCHDGAAAYEAWT 216

Query: 358 SSIAVKFK 335
              A+KFK
Sbjct: 217 VFEAIKFK 224
tr_hit_id B0ZR42
Definition tr|B0ZR42|B0ZR42_PINRA SET domain-containing protein C (Fragment) OS=Pinus radiata
Align length 60
Score (bit) 55.1
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918029|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_G07.
         (519 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0ZR42|B0ZR42_PINRA SET domain-containing protein C (Fragment...    55   2e-06
tr|B0ZR39|B0ZR39_PINTA SET domain-containing protein C (Fragment...    55   2e-06
tr|B0ZR47|B0ZR47_PINEL SET domain-containing protein C (Fragment...    54   6e-06
tr|B0ZR46|B0ZR46_PINEL SET domain-containing protein C (Fragment...    54   6e-06
tr|B0ZR33|B0ZR33_PINTA SET domain-containing protein C (Fragment...    54   6e-06
tr|B0ZR23|B0ZR23_PINTA SET domain-containing protein C (Fragment...    54   6e-06
tr|B0ZR19|B0ZR19_PINTA SET domain-containing protein C (Fragment...    54   6e-06
tr|B0ZR18|B0ZR18_PINTA SET domain-containing protein C (Fragment...    54   6e-06
tr|B0ZR10|B0ZR10_PINTA SET domain-containing protein C (Fragment...    54   6e-06
tr|B0ZR21|B0ZR21_PINTA SET domain-containing protein C (Fragment...    53   1e-05
tr|B0ZR20|B0ZR20_PINTA SET domain-containing protein C (Fragment...    53   1e-05
tr|B0ZR26|B0ZR26_PINTA SET domain-containing protein C (Fragment...    52   1e-05
tr|B0ZR44|B0ZR44_PINSY SET domain-containing protein C (Fragment...    52   2e-05
tr|B0ZR12|B0ZR12_PINTA SET domain-containing protein C (Fragment...    52   2e-05
tr|B0ZR45|B0ZR45_PINSY SET domain-containing protein C (Fragment...    52   2e-05
tr|A9SV99|A9SV99_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|A9U604|A9U604_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|A9TID7|A9TID7_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|B4NSW1|B4NSW1_DROSI GD17664 OS=Drosophila simulans GN=GD17664...    35   2.2  
tr|B6PSA7|B6PSA7_BRAFL Putative uncharacterized protein OS=Branc...    35   2.9  
tr|Q54PU3|Q54PU3_DICDI Putative uncharacterized protein OS=Dicty...    34   5.0  
tr|B6LFQ5|B6LFQ5_BRAFL Putative uncharacterized protein OS=Branc...    33   6.5  
tr|A7SM79|A7SM79_NEMVE Predicted protein OS=Nematostella vectens...    33   6.5  
tr|Q04A39|Q04A39_LACDB Putative uncharacterized protein OS=Lacto...    33   8.5  
tr|B3PFY3|B3PFY3_CELJU dTDP-4-dehydrorhamnose reductase OS=Cellv...    33   8.5  

>tr|B0ZR42|B0ZR42_PINRA SET domain-containing protein C (Fragment)
           OS=Pinus radiata GN=SET-C PE=4 SV=1
          Length = 141

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
 Frame = +3

Query: 15  GFRCGCKRCEFERSVESEIEDISERYEALYDKAAEEVTAV-ATSRYPGPYPACKELAELF 191
           GF C C+RC  E S+++ ++ I+ R++ L+DKA EE  A  +  R+    PAC E A+LF
Sbjct: 73  GFECKCRRCILELSIKAALDPITARFDELHDKALEESDAARSQERFESDLPACAEFAKLF 132


>tr|B0ZR39|B0ZR39_PINTA SET domain-containing protein C (Fragment)
           OS=Pinus taeda GN=SET-C PE=4 SV=1
          Length = 141

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
 Frame = +3

Query: 15  GFRCGCKRCEFERSVESEIEDISERYEALYDKAAEEVTAV-ATSRYPGPYPACKELAELF 191
           GF C C+RC  E S+++ ++ I+ R++ L+DKA EE  A  +  R+    PAC E A+LF
Sbjct: 73  GFECKCRRCIVELSIKAALDPITARFDELHDKALEESNAARSQERFESDLPACAEFAKLF 132


>tr|B0ZR47|B0ZR47_PINEL SET domain-containing protein C (Fragment)
           OS=Pinus elliottii GN=SET-C PE=4 SV=1
          Length = 141

 Score = 53.5 bits (127), Expect = 6e-06
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +3

Query: 15  GFRCGCKRCEFERSVESEIEDISERYEALYDKAAEEVTAVATSR-YPGPYPACKELAELF 191
           GF C C+RC  E S+++ ++ I+ R++ L+DKA EE  A  +   +    PAC E A+LF
Sbjct: 73  GFECKCRRCIVELSIKAALDPITARFDELHDKAVEESNAARSQEGFESDLPACAEFAKLF 132


>tr|B0ZR46|B0ZR46_PINEL SET domain-containing protein C (Fragment)
           OS=Pinus elliottii GN=SET-C PE=4 SV=1
          Length = 141

 Score = 53.5 bits (127), Expect = 6e-06
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +3

Query: 15  GFRCGCKRCEFERSVESEIEDISERYEALYDKAAEEVTAVATSR-YPGPYPACKELAELF 191
           GF C C+RC  E S+++ ++ I+ R++ L+DKA EE  A  +   +    PAC E A+LF
Sbjct: 73  GFECKCRRCIVELSIKAALDPITARFDELHDKAVEESNAARSQEGFESDLPACAEFAKLF 132


>tr|B0ZR33|B0ZR33_PINTA SET domain-containing protein C (Fragment)
           OS=Pinus taeda GN=SET-C PE=4 SV=1
          Length = 141

 Score = 53.5 bits (127), Expect = 6e-06
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +3

Query: 15  GFRCGCKRCEFERSVESEIEDISERYEALYDKAAEEVTAVATSR-YPGPYPACKELAELF 191
           GF C C+RC  E S+++ ++ I+ R++ L+DKA EE  A  +   +    PAC E A+LF
Sbjct: 73  GFECKCRRCIVELSIKAALDPITARFDELHDKAVEESNAARSQEGFESDLPACAEFAKLF 132


>tr|B0ZR23|B0ZR23_PINTA SET domain-containing protein C (Fragment)
           OS=Pinus taeda GN=SET-C PE=4 SV=1
          Length = 141

 Score = 53.5 bits (127), Expect = 6e-06
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +3

Query: 15  GFRCGCKRCEFERSVESEIEDISERYEALYDKAAEEVTAVATSR-YPGPYPACKELAELF 191
           GF C C+RC  E S+++ ++ I+ R++ L+DKA EE  A  +   +    PAC E A+LF
Sbjct: 73  GFECKCRRCIVELSIKAALDPITARFDELHDKAVEESNAARSQEGFESDLPACAEFAKLF 132


>tr|B0ZR19|B0ZR19_PINTA SET domain-containing protein C (Fragment)
           OS=Pinus taeda GN=SET-C PE=4 SV=1
          Length = 141

 Score = 53.5 bits (127), Expect = 6e-06
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +3

Query: 15  GFRCGCKRCEFERSVESEIEDISERYEALYDKAAEEVTAVATSR-YPGPYPACKELAELF 191
           GF C C+RC  E S+++ ++ I+ R++ L+DKA EE  A  +   +    PAC E A+LF
Sbjct: 73  GFECKCRRCIVELSIKAALDPITARFDELHDKAVEESNAARSQEGFESDLPACAEFAKLF 132


>tr|B0ZR18|B0ZR18_PINTA SET domain-containing protein C (Fragment)
           OS=Pinus taeda GN=SET-C PE=4 SV=1
          Length = 141

 Score = 53.5 bits (127), Expect = 6e-06
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +3

Query: 15  GFRCGCKRCEFERSVESEIEDISERYEALYDKAAEEVTAVATSR-YPGPYPACKELAELF 191
           GF C C+RC  E S+++ ++ I+ R++ L+DKA EE  A  +   +    PAC E A+LF
Sbjct: 73  GFECKCRRCIVELSIKAALDPITARFDELHDKAVEESNAARSQEGFESDLPACAEFAKLF 132


>tr|B0ZR10|B0ZR10_PINTA SET domain-containing protein C (Fragment)
           OS=Pinus taeda GN=SET-C PE=4 SV=1
          Length = 141

 Score = 53.5 bits (127), Expect = 6e-06
 Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
 Frame = +3

Query: 15  GFRCGCKRCEFERSVESEIEDISERYEALYDKAAEEVTAVATSR-YPGPYPACKELAELF 191
           GF C C+RC  E S+++ ++ I+ R++ L+DKA EE  A  +   +    PAC E A+LF
Sbjct: 73  GFECKCRRCIVELSIKAALDPITARFDELHDKAVEESNAARSQEGFESDLPACAEFAKLF 132


>tr|B0ZR21|B0ZR21_PINTA SET domain-containing protein C (Fragment)
           OS=Pinus taeda GN=SET-C PE=4 SV=1
          Length = 141

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
 Frame = +3

Query: 15  GFRCGCKRCEFERSVESEIEDISERYEALYDKAAEEVTAVATSR-YPGPYPACKELAELF 191
           GF C C+RC  E S+++ +  I+ R++ L+DKA EE  A  +   +    PAC E A+LF
Sbjct: 73  GFECKCRRCIVELSIKAALHPITARFDELHDKAVEESNAARSQEGFESDLPACAEFAKLF 132