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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918040
Clone id YMU001_000108_H10
Library
Length 167
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000108_H10.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
AGTTCCCATAGCTCGCTAGCAATGCCAATGGCCACATTCCAAAGTGATTTCCCAATTCCA
AGCACCAAAACTTGCGTGTGAGTCTTCCGAACAGTAAGATCGCCAGGTTGCCCCTCCATG
ATTGCCAATACTCGTGTAATACCCAAACTCATCCCAACAGATGGCAC
■■Homology search results ■■ -
sp_hit_id P93422
Definition sp|P93422|SYH_ORYSJ Histidyl-tRNA synthetase OS=Oryza sativa subsp. japonica
Align length 55
Score (bit) 47.4
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918040|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_H10.
         (167 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P93422|SYH_ORYSJ Histidyl-tRNA synthetase OS=Oryza sativa sub...    47   2e-05
sp|Q61035|SYHC_MOUSE Histidyl-tRNA synthetase, cytoplasmic OS=Mu...    44   3e-04
sp|Q5R4R2|SYHC_PONAB Histidyl-tRNA synthetase, cytoplasmic OS=Po...    43   4e-04
sp|P12081|SYHC_HUMAN Histidyl-tRNA synthetase, cytoplasmic OS=Ho...    43   6e-04
sp|Q2KI84|SYHC_BOVIN Histidyl-tRNA synthetase, cytoplasmic OS=Bo...    43   6e-04
sp|Q86AS6|SYHC_DICDI Histidyl-tRNA synthetase, cytoplasmic OS=Di...    42   0.001
sp|P70076|SYHC_FUGRU Histidyl-tRNA synthetase, cytoplasmic OS=Fu...    40   0.003
sp|P07178|SYHC_MESAU Histidyl-tRNA synthetase, cytoplasmic OS=Me...    37   0.040
sp|A5D7V9|SYHM_BOVIN Probable histidyl-tRNA synthetase, mitochon...    36   0.068
sp|Q99KK9|SYHM_MOUSE Probable histidyl-tRNA synthetase, mitochon...    35   0.12 
sp|P49590|SYHM_HUMAN Probable histidyl-tRNA synthetase, mitochon...    35   0.12 
sp|Q5R5E5|SYHM_PONAB Probable histidyl-tRNA synthetase, mitochon...    34   0.20 
sp|Q65RK9|MEND_MANSM 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cycloh...    32   0.99 
sp|Q3YRB1|SYH_EHRCJ Histidyl-tRNA synthetase OS=Ehrlichia canis ...    30   4.9  
sp|Q47RX0|SYH_THEFY Histidyl-tRNA synthetase OS=Thermobifida fus...    29   8.4  
sp|B0UT51|MEND_HAES2 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cycloh...    29   8.4  
sp|Q0I316|MEND_HAES1 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cycloh...    29   8.4  
sp|Q6P4T0|ATG2A_MOUSE Autophagy-related protein 2 homolog A OS=M...    29   8.4  

>sp|P93422|SYH_ORYSJ Histidyl-tRNA synthetase OS=Oryza sativa subsp.
           japonica GN=Os05g0150900 PE=2 SV=2
          Length = 788

 Score = 47.4 bits (111), Expect = 2e-05
 Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEGQPGDLT-VRKTHTQVLVLGIGKSLWNVAIGIASELW 6
           VP+VG+SLGI RV AIME Q  +   +R T T+VLV  IGK L  +A  + SELW
Sbjct: 664 VPAVGVSLGIERVFAIMEQQEMEKNQIRATETEVLVSIIGKDL-ILAAELVSELW 717


>sp|Q61035|SYHC_MOUSE Histidyl-tRNA synthetase, cytoplasmic OS=Mus
           musculus GN=Hars PE=2 SV=1
          Length = 509

 Score = 43.9 bits (102), Expect = 3e-04
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEG--QPGDLTVRKTHTQVLVLGIGKSLWNVAIGIASELWE 3
           VP VG+S+G+ R+ +I+E   +  +  VR T TQVLV    K L    + + SELW+
Sbjct: 377 VPCVGLSIGVERIFSIVEQRLEASEEKVRTTETQVLVASAQKKLLEERLKLVSELWD 433


>sp|Q5R4R2|SYHC_PONAB Histidyl-tRNA synthetase, cytoplasmic OS=Pongo
           abelii GN=HARS PE=2 SV=1
          Length = 509

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEGQPGDLT--VRKTHTQVLVLGIGKSLWNVAIGIASELWE 3
           VP VG+S+G+ R+ +I+E +   L   VR T TQVLV    K L    + + SELW+
Sbjct: 377 VPCVGLSIGVERIFSIVEQRLEALEEKVRTTETQVLVASAQKKLLEERLKLVSELWD 433


>sp|P12081|SYHC_HUMAN Histidyl-tRNA synthetase, cytoplasmic OS=Homo
           sapiens GN=HARS PE=1 SV=2
          Length = 509

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEGQPGDLT--VRKTHTQVLVLGIGKSLWNVAIGIASELWE 3
           VP VG+S+G+ R+ +I+E +   L   +R T TQVLV    K L    + + SELW+
Sbjct: 377 VPCVGLSIGVERIFSIVEQRLEALEEKIRTTETQVLVASAQKKLLEERLKLVSELWD 433


>sp|Q2KI84|SYHC_BOVIN Histidyl-tRNA synthetase, cytoplasmic OS=Bos
           taurus GN=HARS PE=2 SV=1
          Length = 509

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEGQPGDLT--VRKTHTQVLVLGIGKSLWNVAIGIASELWE 3
           VP VG+S+G+ R+ +I+E +   L   VR T TQVLV    K L    + + SELW+
Sbjct: 377 VPCVGLSIGVERIFSIVEQRLEALEEKVRTTETQVLVASAQKKLLEERLKLISELWD 433


>sp|Q86AS6|SYHC_DICDI Histidyl-tRNA synthetase, cytoplasmic
           OS=Dictyostelium discoideum GN=hisS PE=3 SV=1
          Length = 481

 Score = 41.6 bits (96), Expect = 0.001
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEGQ--PGDLTVRKTHTQVLVLGIGKSLWNVAIGIASELWE 3
           VP+VG S+GI R+  I+E +    +  +R+  TQV V+ + K L    + I SELW+
Sbjct: 351 VPAVGFSIGIERIFTILEDEYKKENKKIRENATQVFVVQMEKDLIKERLAIVSELWK 407


>sp|P70076|SYHC_FUGRU Histidyl-tRNA synthetase, cytoplasmic OS=Fugu
           rubripes GN=hars PE=3 SV=1
          Length = 519

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEGQPGDLT--VRKTHTQVLVLGIGKSLWNVAIGIASELW 6
           VP VG+S+GI R+ +IME +    T  +R T  QV+V    K+L    + + +ELW
Sbjct: 392 VPCVGVSIGIERIFSIMEQKAEASTEKIRTTEVQVMVAAAQKNLLEERLRLITELW 447


>sp|P07178|SYHC_MESAU Histidyl-tRNA synthetase, cytoplasmic
           OS=Mesocricetus auratus GN=HARS PE=2 SV=1
          Length = 508

 Score = 36.6 bits (83), Expect = 0.040
 Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEGQPGDL--TVRKTHTQVLVLGIGKSLWNVAIGIASELWE 3
           VP VG+S+G+ R+ +I+E +   L   VR T TQVLV    K L         +LW+
Sbjct: 376 VPCVGLSIGVERIFSIVEQRLEALEEKVRTTETQVLVASAQKKLAGGETKACLQLWD 432


>sp|A5D7V9|SYHM_BOVIN Probable histidyl-tRNA synthetase,
           mitochondrial OS=Bos taurus GN=HARS2 PE=2 SV=1
          Length = 506

 Score = 35.8 bits (81), Expect = 0.068
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEGQPGDL--TVRKTHTQVLVLGIGKSLWNVAIGIASELWE 3
           VP VG+S+G+ R+ +I+E +       +R T TQV V    K+     + + +ELW+
Sbjct: 378 VPCVGLSIGVERIFSIVEQRIKTFGEKIRTTETQVFVATPQKNFLQERLKLIAELWD 434


>sp|Q99KK9|SYHM_MOUSE Probable histidyl-tRNA synthetase,
           mitochondrial OS=Mus musculus GN=Hars2 PE=2 SV=1
          Length = 505

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEG--QPGDLTVRKTHTQVLVLGIGKSLWNVAIGIASELWE 3
           VP VG+S+G+ R+  ++E   +     VR T TQV V    K+     + I +ELW+
Sbjct: 377 VPCVGLSIGVERIFYLVEQKMKMSGEKVRTTETQVFVATPQKNFLQERLKIIAELWD 433
tr_hit_id Q0DKP0
Definition tr|Q0DKP0|Q0DKP0_ORYSJ Os05g0150900 protein OS=Oryza sativa subsp. japonica
Align length 55
Score (bit) 47.4
E-value 0.0004
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918040|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_H10.
         (167 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q0DKP0|Q0DKP0_ORYSJ Os05g0150900 protein OS=Oryza sativa subs...    47   4e-04
tr|B7ZWY2|B7ZWY2_MAIZE Putative uncharacterized protein OS=Zea m...    47   4e-04
tr|A3B017|A3B017_ORYSJ Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|A2Y0G8|A2Y0G8_ORYSI Putative uncharacterized protein OS=Oryza...    47   4e-04
tr|Q9SBK5|Q9SBK5_WHEAT Histidyl-tRNA synthetase (Fragment) OS=Tr...    45   0.001
tr|Q6DFI9|Q6DFI9_XENLA LOC445827 protein (Fragment) OS=Xenopus l...    44   0.003
tr|A7S3F9|A7S3F9_NEMVE Predicted protein OS=Nematostella vectens...    44   0.003
tr|Q9D094|Q9D094_MOUSE Putative uncharacterized protein OS=Mus m...    44   0.004
tr|Q8VDX8|Q8VDX8_MOUSE Hars protein OS=Mus musculus GN=Hars PE=2...    44   0.004
tr|Q8C2D1|Q8C2D1_MOUSE Putative uncharacterized protein OS=Mus m...    44   0.004
tr|Q3UDH1|Q3UDH1_MOUSE Putative uncharacterized protein OS=Mus m...    44   0.004
tr|Q3U890|Q3U890_MOUSE Putative uncharacterized protein OS=Mus m...    44   0.004
tr|Q3TKU3|Q3TKU3_MOUSE Putative uncharacterized protein OS=Mus m...    44   0.004
tr|Q9ZTW6|Q9ZTW6_WHEAT Histidyl-tRNA synthetase (Fragment) OS=Tr...    44   0.004
tr|Q5ZK86|Q5ZK86_CHICK Putative uncharacterized protein OS=Gallu...    44   0.005
tr|Q4QQV4|Q4QQV4_RAT Dead end homolog 1 (Zebrafish) OS=Rattus no...    44   0.005
tr|Q4R5P5|Q4R5P5_MACFA Brain cDNA, clone: QccE-11515, similar to...    43   0.007
tr|Q3T0B1|Q3T0B1_BOVIN HARS protein (Fragment) OS=Bos taurus GN=...    43   0.009
tr|Q52NV4|Q52NV4_HUMAN Histidyl-tRNA synthetase OS=Homo sapiens ...    43   0.009
tr|B4E1C5|B4E1C5_HUMAN cDNA FLJ58562, highly similar to Histidyl...    43   0.009
tr|B4DY73|B4DY73_HUMAN cDNA FLJ58554, highly similar to Histidyl...    43   0.009
tr|B4DHQ1|B4DHQ1_HUMAN cDNA FLJ53452, highly similar to Histidyl...    43   0.009
tr|B4DDD8|B4DDD8_HUMAN cDNA FLJ53703, highly similar to Histidyl...    43   0.009
tr|B3KWE1|B3KWE1_HUMAN cDNA FLJ42841 fis, clone BRCOC2003213, hi...    43   0.009
tr|A2EJM3|A2EJM3_TRIVA Histidyl-tRNA synthetase family protein O...    42   0.015
tr|A7Q804|A7Q804_VITVI Chromosome chr18 scaffold_61, whole genom...    41   0.026
tr|Q4T4A6|Q4T4A6_TETNG Chromosome undetermined SCAF9759, whole g...    40   0.058
tr|Q5KJI8|Q5KJI8_CRYNE Histidine-tRNA ligase, putative (Putative...    40   0.058
tr|Q9M8R8|Q9M8R8_ARATH Putative histidyl tRNA synthetase OS=Arab...    39   0.099
tr|Q0WN73|Q0WN73_ARATH Putative histidyl tRNA synthetase (Fragme...    39   0.099

>tr|Q0DKP0|Q0DKP0_ORYSJ Os05g0150900 protein OS=Oryza sativa subsp.
           japonica GN=Os05g0150900 PE=3 SV=1
          Length = 788

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEGQPGDLT-VRKTHTQVLVLGIGKSLWNVAIGIASELW 6
           VP+VG+SLGI RV AIME Q  +   +R T T+VLV  IGK L  +A  + SELW
Sbjct: 664 VPAVGVSLGIERVFAIMEQQEMEKNQIRATETEVLVSIIGKDL-ILAAELVSELW 717


>tr|B7ZWY2|B7ZWY2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 586

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEGQPGDLT--VRKTHTQVLVLGIGKSLWNVAIGIASELW 6
           +P+VG+SLGI RV AIME Q  +    +R T T+VLV  +GK L  +A  + SELW
Sbjct: 461 IPAVGVSLGIERVFAIMEQQEKERNEKIRPTETEVLVSILGKDL-TLAAELVSELW 515


>tr|A3B017|A3B017_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_016389 PE=3 SV=1
          Length = 848

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEGQPGDLT-VRKTHTQVLVLGIGKSLWNVAIGIASELW 6
           VP+VG+SLGI RV AIME Q  +   +R T T+VLV  IGK L  +A  + SELW
Sbjct: 724 VPAVGVSLGIERVFAIMEQQEMEKNQIRATETEVLVSIIGKDL-ILAAELVSELW 777


>tr|A2Y0G8|A2Y0G8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18483 PE=3 SV=1
          Length = 885

 Score = 47.4 bits (111), Expect = 4e-04
 Identities = 30/55 (54%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEGQPGDLT-VRKTHTQVLVLGIGKSLWNVAIGIASELW 6
           VP+VG+SLGI RV AIME Q  +   +R T T+VLV  IGK L  +A  + SELW
Sbjct: 761 VPAVGVSLGIERVFAIMEQQEMEKNQIRATETEVLVSIIGKDL-ILAAELVSELW 814


>tr|Q9SBK5|Q9SBK5_WHEAT Histidyl-tRNA synthetase (Fragment)
           OS=Triticum aestivum PE=2 SV=1
          Length = 432

 Score = 45.4 bits (106), Expect = 0.001
 Identities = 28/56 (50%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEGQPGD--LTVRKTHTQVLVLGIGKSLWNVAIGIASELW 6
           VP+VG+SLGI RV AIME Q  +    +R T T+VLV  +GK L  +A  + +ELW
Sbjct: 307 VPAVGVSLGIERVFAIMEQQEKEKNQVIRATETEVLVSILGKDL-ILAAELVNELW 361


>tr|Q6DFI9|Q6DFI9_XENLA LOC445827 protein (Fragment) OS=Xenopus
           laevis GN=LOC445827 PE=2 SV=1
          Length = 514

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIME--GQPGDLTVRKTHTQVLVLGIGKSLWNVAIGIASELW 6
           VP VG+S+GI R+ +IME   +  +  +R T TQVLV    K L    + + SELW
Sbjct: 386 VPCVGVSIGIERIFSIMEQKAEASEEKIRTTETQVLVAAAQKKLLEERMKLISELW 441


>tr|A7S3F9|A7S3F9_NEMVE Predicted protein OS=Nematostella vectensis
           GN=v1g185216 PE=3 SV=1
          Length = 519

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 2/57 (3%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEG--QPGDLTVRKTHTQVLVLGIGKSLWNVAIGIASELWE 3
           VP VG+S+GI R+ +I+E   +  D  +R   TQVLV    K++    + +ASELWE
Sbjct: 391 VPCVGVSIGIERIFSILEAKSEASDKKMRTNKTQVLVASGQKNMLQHRLKLASELWE 447


>tr|Q9D094|Q9D094_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Hars PE=2 SV=1
          Length = 509

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEG--QPGDLTVRKTHTQVLVLGIGKSLWNVAIGIASELWE 3
           VP VG+S+G+ R+ +I+E   +  +  VR T TQVLV    K L    + + SELW+
Sbjct: 377 VPCVGLSIGVERIFSIVEQRLEASEEKVRTTETQVLVASAQKKLLEERLKLVSELWD 433


>tr|Q8VDX8|Q8VDX8_MOUSE Hars protein OS=Mus musculus GN=Hars PE=2
           SV=1
          Length = 509

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEG--QPGDLTVRKTHTQVLVLGIGKSLWNVAIGIASELWE 3
           VP VG+S+G+ R+ +I+E   +  +  VR T TQVLV    K L    + + SELW+
Sbjct: 377 VPCVGLSIGVERIFSIVEQRLEASEEKVRTTETQVLVASAQKKLLEERLKLVSELWD 433


>tr|Q8C2D1|Q8C2D1_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Hars PE=2 SV=1
          Length = 509

 Score = 43.9 bits (102), Expect = 0.004
 Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
 Frame = -1

Query: 167 VPSVGMSLGITRVLAIMEG--QPGDLTVRKTHTQVLVLGIGKSLWNVAIGIASELWE 3
           VP VG+S+G+ R+ +I+E   +  +  VR T TQVLV    K L    + + SELW+
Sbjct: 377 VPCVGLSIGVERIFSIVEQRLEASEEKVRTTETQVLVASAQKKLLEERLKLVSELWD 433