BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918041|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_H11.
         (404 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P38471|YMF29_MARPO Uncharacterized mitochondrial protein ymf2...    30   4.8  
sp|Q9Y705|ALP4_SCHPO Spindle pole body component alp4 OS=Schizos...    30   4.8  
sp|Q751D2|SRB8_ASHGO Mediator of RNA polymerase II transcription...    29   6.3  

>sp|P38471|YMF29_MARPO Uncharacterized mitochondrial protein ymf29
           OS=Marchantia polymorpha GN=YMF29 PE=4 SV=1
          Length = 207

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 135 GVDAFACLLTWYNCCVRHCQQDLGPIEWSKYFM*VLICR 19
           G+   + +  WYN    H Q  L  I+W K ++  +IC+
Sbjct: 161 GLGILSDISKWYNSKRGHYQTSLSNIDWKKQYLKSMICQ 199


>sp|Q9Y705|ALP4_SCHPO Spindle pole body component alp4
           OS=Schizosaccharomyces pombe GN=alp4 PE=1 SV=1
          Length = 784

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +3

Query: 255 DVYSTEVLCTHLYARECLLDILQKSIQLFHRTCSLEH 365
           D ++  ++  ++YA E LL +LQ S  L+    SL+H
Sbjct: 396 DNFTLNIMNAYVYANESLLQLLQSSQSLYAHLYSLKH 432


>sp|Q751D2|SRB8_ASHGO Mediator of RNA polymerase II transcription
            subunit 12 OS=Ashbya gossypii GN=SRB8 PE=3 SV=1
          Length = 1358

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 4/45 (8%)
 Frame = +3

Query: 255  DVYSTEVLCTHLYARECLLDILQKSIQLFH----RTCSLEHSADV 377
            D+    VLC+HL+ R    D+L+K +++F     + C  E   DV
Sbjct: 1070 DLTRYNVLCSHLFDRVANFDVLEKLLEVFEADFFKKCLSEDPDDV 1114

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918041|Adiantum capillus-veneris mRNA, clone:
YMU001_000108_H11.
         (404 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A8R0H8|A8R0H8_9RETR Gag polyprotein (Fragment) OS=Equine infe...    33   9.4  

>tr|A8R0H8|A8R0H8_9RETR Gag polyprotein (Fragment) OS=Equine
           infectious anemia virus GN=gag PE=4 SV=1
          Length = 488

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 42  SICSTQWALNLVDNVSRNNYTKSKDRQMHQHLEIV 146
           +I +  WALNLVD     NYTK KD Q+   + ++
Sbjct: 26  TIGNCNWALNLVDLFHDTNYTKEKDWQLRDVIPLL 60