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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918052
Clone id YMU001_000109_A11
Library
Length 503
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_A11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
AACTGGAAGAATTCGCGGCCTCATCATCTCTGTGCTAATCATGCAACTAATCTGATCATC
CCTCACATGGTTTATATTCACCATGTCACTACTTCTGGTTATTGCGATAGAATTATCTGG
TACTTCCGACATTTTTCCTAGCTGCTGCGGTTCATAATCACCAACCCTTTCAAAGTCTGC
ATAATCTTGTGGTTCAGTGGCCGTGGCAGCCTCTCTTTCAGCCCTCCTGCTTATTAGCAA
TCCCAACAAAGGATTTAACTCCTTTCCTTTGATGTCTTTTGCGACTTCCGCACTTCTGCG
ACGTAAGCTGTTCATTTCCTCCTCACTCAGACGTAGAGGAACTCTGGACCCCGACGCATT
CTCTGCCTCCCTACAGCTACAGAAATTCCTATCACCGCTTCCATAACTCAAGTCCTTCTT
TGGTACTGATTTGCAAACAGAAGCCATACTAATACTGGCTTCGTCGTTTACCATACACTG
AGAACCACTAATTGAAGCTTCTT
■■Homology search results ■■ -
sp_hit_id Q60BY3
Definition sp|Q60BY3|AROK_METCA Shikimate kinase OS=Methylococcus capsulatus
Align length 40
Score (bit) 30.8
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918052|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_A11.
         (483 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q60BY3|AROK_METCA Shikimate kinase OS=Methylococcus capsulatu...    31   3.4  
sp|Q69CM7|MYBPP_RAT MYCBP-associated protein OS=Rattus norvegicu...    30   7.5  

>sp|Q60BY3|AROK_METCA Shikimate kinase OS=Methylococcus capsulatus
           GN=aroK PE=3 SV=1
          Length = 179

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = -3

Query: 358 SCREAENASGSRVPLRLSEEEMNSLRRRSAEVAKDIKGKE 239
           S +E E  +G  VP+    E     RRR +EV  D+ GKE
Sbjct: 35  SDKEIERRTGVTVPMIFEYEGEAGFRRRESEVIADLTGKE 74


>sp|Q69CM7|MYBPP_RAT MYCBP-associated protein OS=Rattus norvegicus
           GN=Mycbpap PE=2 SV=1
          Length = 928

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 16/59 (27%), Positives = 32/59 (54%)
 Frame = -3

Query: 400 KKDLSYGSGDRNFCSCREAENASGSRVPLRLSEEEMNSLRRRSAEVAKDIKGKELNPLL 224
           K+D   G+ ++   S R+ E   GS+ P +  E+ +NS ++++ +  K +K    + LL
Sbjct: 808 KEDRRGGAQEKKQLSARDKEEKKGSKTPSK--EDRLNSKKQKAKDDKKVVKSTSRDRLL 864
tr_hit_id Q74GM7
Definition tr|Q74GM7|Q74GM7_GEOSL Cytochrome c oxidase, subunit I OS=Geobacter sulfurreducens
Align length 56
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918052|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_A11.
         (483 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q74GM7|Q74GM7_GEOSL Cytochrome c oxidase, subunit I OS=Geobac...    35   2.4  
tr|Q0V252|Q0V252_PHANO Putative uncharacterized protein OS=Phaeo...    34   4.1  
tr|Q310M6|Q310M6_DESDG Cytochrome-c oxidase OS=Desulfovibrio des...    34   4.1  
tr|Q22VB1|Q22VB1_TETTH Putative uncharacterized protein OS=Tetra...    34   4.1  
tr|Q4RW45|Q4RW45_TETNG Chromosome 9 SCAF14991, whole genome shot...    33   7.0  
tr|B6PVT5|B6PVT5_BRAFL Putative uncharacterized protein OS=Branc...    33   7.0  
tr|B6P1I3|B6P1I3_BRAFL Putative uncharacterized protein OS=Branc...    33   7.0  
tr|B6LUN8|B6LUN8_BRAFL Putative uncharacterized protein OS=Branc...    33   7.0  
tr|Q47MY8|Q47MY8_THEFY Band 7 protein OS=Thermobifida fusca (str...    33   7.0  
tr|Q38EI4|Q38EI4_9TRYP Putative uncharacterized protein OS=Trypa...    33   7.0  
tr|Q8IJG6|Q8IJG6_PLAF7 Putative uncharacterized protein OS=Plasm...    33   9.1  
tr|Q7RM86|Q7RM86_PLAYO Chromodomain-helicase-DNA-binding protein...    33   9.1  
tr|Q4Z3X5|Q4Z3X5_PLABE Putative uncharacterized protein (Fragmen...    33   9.1  
tr|Q4Y279|Q4Y279_PLACH Putative uncharacterized protein (Fragmen...    33   9.1  

>tr|Q74GM7|Q74GM7_GEOSL Cytochrome c oxidase, subunit I OS=Geobacter
           sulfurreducens GN=GSU0219 PE=3 SV=1
          Length = 541

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +2

Query: 47  MVYIHHVTTSGYCDRIIWYFRHFS*LLRFIITNPFKVCIILWFSG--RGSLSFSPP 208
           +V+ HH+ TSG  D  +  F      L FI+  P  + +  W S   RGS+S  PP
Sbjct: 302 LVWGHHMFTSGMSDTAVLVFS----FLSFIVAIPSAIKVFNWISTLYRGSISLDPP 353


>tr|Q0V252|Q0V252_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_01912 PE=4 SV=1
          Length = 210

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 25/76 (32%), Positives = 35/76 (46%)
 Frame = +1

Query: 145 PFQSLHNLVVQWPWQPLFQPSCLLAIPTKDLTPFL*CLLRLPHFCDVSCSFPPHSDVEEL 324
           P   +H    + P  P++ PS + A P    TP       +PH+   S S PPH  V   
Sbjct: 76  PSYPVHTPSSKAPEYPVYTPSSV-APPYPIYTPSS----EVPHYPIYSSSAPPHYPV--- 127

Query: 325 WTPTHSLPPYSYRNSY 372
           WTP+ S P Y   +S+
Sbjct: 128 WTPSSSAPGYPVWDSF 143


>tr|Q310M6|Q310M6_DESDG Cytochrome-c oxidase OS=Desulfovibrio
           desulfuricans (strain G20) GN=Dde_1823 PE=3 SV=1
          Length = 543

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +2

Query: 47  MVYIHHVTTSGYCDRIIWYFRHFS*LLRFIITNPFKVCIILWFSG--RGSLSFSPPAY 214
           +V+ HH+ TSG  D  +  F      L F++  P  + +  W S   +GS+   PP Y
Sbjct: 304 LVWAHHMFTSGMSDTAVLVFS----FLTFVVAIPSAIKVFNWVSTMFKGSIYLEPPMY 357


>tr|Q22VB1|Q22VB1_TETTH Putative uncharacterized protein
           OS=Tetrahymena thermophila SB210 GN=TTHERM_01215030 PE=4
           SV=1
          Length = 1371

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/55 (29%), Positives = 34/55 (61%)
 Frame = -3

Query: 169 QDYADFERVGDYEPQQLGKMSEVPDNSIAITRSSDMVNINHVRDDQISCMISTEM 5
           ++Y  F R+ +++ + L K+ +    ++++ +SSD  + NH+ DDQ  C+  +EM
Sbjct: 381 KEYYSFNRLQEFKNKSL-KVQDNQKKNLSLKQSSDQFDGNHIEDDQ--CVFDSEM 432


>tr|Q4RW45|Q4RW45_TETNG Chromosome 9 SCAF14991, whole genome shotgun
           sequence OS=Tetraodon nigroviridis GN=GSTENG00028039001
           PE=3 SV=1
          Length = 467

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +1

Query: 259 LRLPHFCDV-SCSFPPHSDV-EELWTPTHSLPPYSYRNSYHRFHNSSPS 399
           L +P   D  SCSF P + V    WTP H+ P   Y    H+ H +S S
Sbjct: 44  LVMPECADYPSCSFAPKAPVFSTSWTPVHTQPSVGYHPYSHQAHLASDS 92


>tr|B6PVT5|B6PVT5_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_111559 PE=4 SV=1
          Length = 572

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +1

Query: 184 WQPLFQ--PSCLLAIPTKDLTPFL*CLLRLPHFCDVSCSFPPHSDVEELWTP-THSLP 348
           W P     P+ L  +P   L PF+   L    + D  C+F  HS +   WTP  H++P
Sbjct: 499 WTPAIYAVPTQLTTVP--GLQPFMQYPLSWAQYLDSCCAFSTHSAIHNTWTPAVHAVP 554


>tr|B6P1I3|B6P1I3_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_101638 PE=4 SV=1
          Length = 189

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +1

Query: 184 WQPLFQ--PSCLLAIPTKDLTPFL*CLLRLPHFCDVSCSFPPHSDVEELWTP-THSLP 348
           W P     P+ L  +P   L PF+   L    + D  C+F  HS +   WTP  H++P
Sbjct: 116 WTPAIYAVPTQLTTVP--GLQPFMQYPLSWAQYLDSCCAFSTHSAIHNTWTPAVHAVP 171


>tr|B6LUN8|B6LUN8_BRAFL Putative uncharacterized protein
            OS=Branchiostoma floridae GN=BRAFLDRAFT_74751 PE=4 SV=1
          Length = 985

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +1

Query: 184  WQPLFQ--PSCLLAIPTKDLTPFL*CLLRLPHFCDVSCSFPPHSDVEELWTP-THSLP 348
            W P     P+ L  +P   L PF+   L    + D  C+F  HS +   WTP  H++P
Sbjct: 912  WTPAMYAVPTQLTTVP--GLQPFMQYPLSWAQYLDSCCAFSTHSAIHNTWTPAVHAVP 967


>tr|Q47MY8|Q47MY8_THEFY Band 7 protein OS=Thermobifida fusca (strain
           YX) GN=Tfu_2148 PE=4 SV=1
          Length = 538

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 20/63 (31%), Positives = 33/63 (52%)
 Frame = -3

Query: 427 MASVCKSVPKKDLSYGSGDRNFCSCREAENASGSRVPLRLSEEEMNSLRRRSAEVAKDIK 248
           + +V  S+P+  +  G GD      R A+   G   P+  S+EE+ +LR R AE+ + I 
Sbjct: 424 LEAVADSLPQL-VQVGDGDAAIDFLRVAQQLIGGTDPVLFSDEEIAALRTRLAEIQERIA 482

Query: 247 GKE 239
            +E
Sbjct: 483 ARE 485


>tr|Q38EI4|Q38EI4_9TRYP Putative uncharacterized protein
           OS=Trypanosoma brucei GN=Tb09.160.5640 PE=4 SV=1
          Length = 1857

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = -3

Query: 463 SQCMVNDEASISMASVCKSVPKKDLSYGSGDRNFCSCREA-ENASGSRVPLRLSEEEM 293
           SQC  +    ++ A+ C SV  +D S  +   N      A EN+SGS V  +L +EEM
Sbjct: 87  SQCGSSSADVVASAAACVSVVHEDFSESTEHINIAQTDNACENSSGSDVCTQLKDEEM 144