BP918057 |
Clone id |
YMU001_000109_B04 |
Library |
YMU01 |
Length |
506 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU001_000109_B04. |
Accession |
BP918057 |
Tissue type |
prothallium |
Developmental stage |
- |
Contig ID |
CL9Contig1 |
Sequence |
CTCGTGAGCATGCTTTACTAGCTTCACACTCGGTGTGAAGCAGATGATTTGCTGTTGTAA TAAGATGGATGCCACCACACCTAAGTATTCCAAGGCCAGGTTTATTATTGATTTGAAGCA AGCTGCTGCGCAATCTGATGACTCCGCATTGAAGCCCAACCTTAGTGCTTTCACTTCTAA AATTACGTTCGATTCAGGCACCCCCTCCAAAAACAATCGCCTGAGTGTTTCCTCTGCCTC TTTTTCGAAGTCACGCTTCTTCCTTACAGCGTCAACCTCTTCCTCTTCCTCTTCAACTCC GGCAGAAACCCCAGCATCTTGATCAGCATCATCAAGGTCATCTTGCTCTTCCTTTAACCT CATTTCAATAATCTTCTCAGCTGGTATGGGAGCAACAGAGTATCTCCATTCATCTTCTTG ACTTGCATCCTTCATCAACCACCTGAATCCTGCCCCTGAAGCACCCACCTCTGATTCCTC CCAAACAATAGCTTGTGAAGGATGCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P34823 |
Definition |
sp|P34823|EF1A2_DAUCA Elongation factor 1-alpha OS=Daucus carota |
Align length |
51 |
Score (bit) |
64.3 |
E-value |
3.0e-10 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S2L2 |
Definition |
tr|A9S2L2|A9S2L2_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens |
Align length |
132 |
Score (bit) |
103.0 |
E-value |
6.0e-21 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= BP918057|Adiantum capillus-veneris mRNA, clone: YMU001_000109_B04. (506 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S2L2|A9S2L2_PHYPA Predicted protein (Fragment) OS=Physcomit... 103 6e-21 tr|A7QDQ9|A7QDQ9_VITVI Chromosome chr15 scaffold_82, whole genom... 86 1e-15 tr|O49733|O49733_ARATH Initiation factor-2Bepsilon-like protein ... 67 5e-10 tr|Q9C5L4|Q9C5L4_ARATH Elongation factor 1-alpha OS=Arabidopsis ... 65 2e-09 tr|Q9M7E6|Q9M7E6_MAIZE Elongation factor 1-alpha OS=Zea mays PE=... 64 3e-09 tr|Q9M7E5|Q9M7E5_MAIZE Elongation factor 1-alpha OS=Zea mays PE=... 64 3e-09 tr|Q9M7E4|Q9M7E4_MAIZE Elongation factor 1-alpha OS=Zea mays PE=... 64 3e-09 tr|Q9M7E3|Q9M7E3_MAIZE Elongation factor 1-alpha OS=Zea mays PE=... 64 3e-09 tr|Q9M7E0|Q9M7E0_MAIZE Elongation factor 1-alpha OS=Zea mays PE=... 64 3e-09 tr|Q8H9A9|Q8H9A9_9CARY Elongation factor 1-alpha OS=Salsola koma... 64 3e-09 tr|Q7X9D1|Q7X9D1_PYRPY Elongation factor 1 alpha (Fragment) OS=P... 64 3e-09 tr|Q2I2W1|Q2I2W1_MALDO Elongation factor 1 alpha (Fragment) OS=M... 64 3e-09 tr|Q207T3|Q207T3_9ASPA Elongation factor 1-alpha OS=Gymnadenia c... 64 3e-09 tr|Q1W2E1|Q1W2E1_DAUCA Elongation factor 1-alpha (Fragment) OS=D... 64 3e-09 tr|B6V864|B6V864_PRUPE Elongation factor 1-alpha OS=Prunus persi... 64 3e-09 tr|B6T433|B6T433_MAIZE Elongation factor 1-alpha OS=Zea mays PE=... 64 3e-09 tr|B6SKA7|B6SKA7_MAIZE Elongation factor 1-alpha OS=Zea mays PE=... 64 3e-09 tr|B4FY16|B4FY16_MAIZE Putative uncharacterized protein OS=Zea m... 64 3e-09 tr|A8JWH3|A8JWH3_9NEOP Elongation factor 1-alpha (Fragment) OS=B... 64 3e-09 tr|Q8GUS5|Q8GUS5_PONTR Elongation factor 1-alpha (Fragment) OS=P... 64 4e-09 tr|Q9M7E1|Q9M7E1_MAIZE Elongation factor 1-alpha OS=Zea mays PE=... 64 5e-09 tr|A9SA04|A9SA04_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 64 5e-09 tr|A9RGA5|A9RGA5_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 64 5e-09 tr|Q9M7E2|Q9M7E2_MAIZE Elongation factor 1-alpha OS=Zea mays PE=... 63 7e-09 tr|Q84RU1|Q84RU1_AVIMR Elongation factor 1-alpha OS=Avicennia ma... 63 7e-09 tr|A9SA16|A9SA16_PHYPA Elongation factor 1-alpha OS=Physcomitrel... 63 7e-09 tr|Q9XEW9|Q9XEW9_LILLO Elongation factor 1-alpha OS=Lilium longi... 63 9e-09 tr|Q9LN13|Q9LN13_ARATH Elongation factor 1-alpha OS=Arabidopsis ... 63 9e-09 tr|Q9ASU9|Q9ASU9_ARATH Elongation factor 1-alpha OS=Arabidopsis ... 63 9e-09 tr|Q94AD0|Q94AD0_ARATH Elongation factor 1-alpha OS=Arabidopsis ... 63 9e-09
>tr|A9S2L2|A9S2L2_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_40855 PE=4 SV=1 Length = 736
Score = 103 bits (256), Expect = 6e-21 Identities = 55/132 (41%), Positives = 77/132 (58%), Gaps = 2/132 (1%) Frame = -3
Query: 483 WEESEVGASGAGFRWLMKDASQEDEWRYSVAPIPAEKIIEMRLKEEXXXXXXXXXXAGVS 304 W+ EVG +GAG+RW +D SQE++WR+SVAPIPA+KI E+ EE G + Sbjct: 490 WDPDEVGETGAGYRWSNRDGSQEEDWRHSVAPIPADKIRELVSAEEEGEIEEADNDFGAA 549
Query: 303 AGVXXXXXEVDAVRKKRDFEKEAEETLRRLF--LEGVPESNVILEVKALRLGFNAESSDC 130 A + + + DFEKE E T RL GV +V++EV +L+L +N +DC Sbjct: 550 ARDSIAGTDEETEDDEDDFEKEVEGTFLRLAEGTAGVQPEHVVIEVNSLKLAYNKTFADC 609
Query: 129 AAACFKSIINLA 94 A A FK++ NLA Sbjct: 610 AGAMFKALANLA 621
>tr|A7QDQ9|A7QDQ9_VITVI Chromosome chr15 scaffold_82, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00036700001 PE=4 SV=1 Length = 667
Score = 85.9 bits (211), Expect = 1e-15 Identities = 56/173 (32%), Positives = 83/173 (47%), Gaps = 12/173 (6%) Frame = -3
Query: 495 QAIVWEES--EVGASGAGFRWLMKDASQEDEWRYSVAPIPAEKI----------IEMRLK 352 + + W + +VG+ G G+ W + + E+EWR+SVAP PA+K+ +E+ + Sbjct: 459 EEVQWRQKSRQVGSGGVGYIWSICEGGHEEEWRHSVAPTPADKLTEVMQATDDDLELTTQ 518
Query: 351 EEXXXXXXXXXXAGVSAGVXXXXXEVDAVRKKRDFEKEAEETLRRLFLEGVPESNVILEV 172 ++ + D+ FEKE E T R E V E +VILEV Sbjct: 519 GSNVLLPSGELVPDSNSNISEDDDNEDSRDDSVYFEKEVEATFLRAVHENVKEDHVILEV 578
Query: 171 KALRLGFNAESSDCAAACFKSIINLALEYLGVVASILLQQQIICFTPSVKLVK 13 +LRL +N S+DCA A F S++ LALE S LL+ T KL+K Sbjct: 579 NSLRLSYNMTSADCAGALFYSVMKLALETPCNSNSELLKNVASVITRWQKLIK 631
>tr|O49733|O49733_ARATH Initiation factor-2Bepsilon-like protein OS=Arabidopsis thaliana GN=T9A21.150 PE=2 SV=1 Length = 709
Score = 67.0 bits (162), Expect = 5e-10 Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 5/134 (3%) Frame = -3
Query: 474 SEVGASGAGFRWLMKDASQEDEWRYSVAPIPAEKIIEMR-LKEEXXXXXXXXXXAGVSAG 298 SE+G GAG+ W + D++ ++EW++SV PIP +K+ ++ ++ Sbjct: 468 SELGPDGAGYIWEICDSAHDEEWKHSVVPIPMDKLADITGAMDDDDIEDDIVVPPSGELK 527
Query: 297 VXXXXXEVDAVRKKRDFEKEAEETLRRLFLEGVPESN----VILEVKALRLGFNAESSDC 130 DA DFE+E EE FL V + N VI + + RL +N +S+DC Sbjct: 528 SDTDIINTDANDSYGDFEREVEEE----FLSAVEKDNKADIVIPLINSHRLAYNMDSADC 583
Query: 129 AAACFKSIINLALE 88 A A F S++ LA++ Sbjct: 584 AGAVFYSMMRLAVK 597
>tr|Q9C5L4|Q9C5L4_ARATH Elongation factor 1-alpha OS=Arabidopsis thaliana GN=At5g60390 PE=2 SV=1 Length = 449
Score = 64.7 bits (156), Expect = 2e-09 Identities = 30/53 (56%), Positives = 37/53 (69%) Frame = +2
Query: 14 FTSFTLGVKQMICCCNKMDATTPKYSKARFIIDLKQAAAQSDDSALKPNLSAF 172 F +FTLGVKQMICCCNKMDATTPKYSKAR+ +K+ ++ P+ F Sbjct: 138 FLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVSSYLKKVGYNPDKIPF 190
>tr|Q9M7E6|Q9M7E6_MAIZE Elongation factor 1-alpha OS=Zea mays PE=2 SV=1 Length = 447
Score = 64.3 bits (155), Expect = 3e-09 Identities = 30/51 (58%), Positives = 37/51 (72%) Frame = +2
Query: 20 SFTLGVKQMICCCNKMDATTPKYSKARFIIDLKQAAAQSDDSALKPNLSAF 172 +FTLGVKQMICCCNKMDATTPKYSKAR+ +K+ ++ P+ AF Sbjct: 140 AFTLGVKQMICCCNKMDATTPKYSKARYEEIVKEVSSYLKKVGYNPDKIAF 190
>tr|Q9M7E5|Q9M7E5_MAIZE Elongation factor 1-alpha OS=Zea mays PE=2 SV=1 Length = 447
Score = 64.3 bits (155), Expect = 3e-09 Identities = 30/51 (58%), Positives = 37/51 (72%) Frame = +2
Query: 20 SFTLGVKQMICCCNKMDATTPKYSKARFIIDLKQAAAQSDDSALKPNLSAF 172 +FTLGVKQMICCCNKMDATTPKYSKAR+ +K+ ++ P+ AF Sbjct: 140 AFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIAF 190
>tr|Q9M7E4|Q9M7E4_MAIZE Elongation factor 1-alpha OS=Zea mays PE=2 SV=1 Length = 447
Score = 64.3 bits (155), Expect = 3e-09 Identities = 30/51 (58%), Positives = 37/51 (72%) Frame = +2
Query: 20 SFTLGVKQMICCCNKMDATTPKYSKARFIIDLKQAAAQSDDSALKPNLSAF 172 +FTLGVKQMICCCNKMDATTPKYSKAR+ +K+ ++ P+ AF Sbjct: 140 AFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIAF 190
>tr|Q9M7E3|Q9M7E3_MAIZE Elongation factor 1-alpha OS=Zea mays PE=2 SV=1 Length = 447
Score = 64.3 bits (155), Expect = 3e-09 Identities = 30/51 (58%), Positives = 37/51 (72%) Frame = +2
Query: 20 SFTLGVKQMICCCNKMDATTPKYSKARFIIDLKQAAAQSDDSALKPNLSAF 172 +FTLGVKQMICCCNKMDATTPKYSKAR+ +K+ ++ P+ AF Sbjct: 140 AFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIAF 190
>tr|Q9M7E0|Q9M7E0_MAIZE Elongation factor 1-alpha OS=Zea mays PE=2 SV=1 Length = 447
Score = 64.3 bits (155), Expect = 3e-09 Identities = 30/51 (58%), Positives = 37/51 (72%) Frame = +2
Query: 20 SFTLGVKQMICCCNKMDATTPKYSKARFIIDLKQAAAQSDDSALKPNLSAF 172 +FTLGVKQMICCCNKMDATTPKYSKAR+ +K+ ++ P+ AF Sbjct: 140 AFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPDKIAF 190
>tr|Q8H9A9|Q8H9A9_9CARY Elongation factor 1-alpha OS=Salsola komarovii GN=skef-1A PE=2 SV=1 Length = 447
Score = 64.3 bits (155), Expect = 3e-09 Identities = 30/51 (58%), Positives = 37/51 (72%) Frame = +2
Query: 20 SFTLGVKQMICCCNKMDATTPKYSKARFIIDLKQAAAQSDDSALKPNLSAF 172 +FTLGVKQMICCCNKMDATTPKYSK+RF +K+ ++ P+ AF Sbjct: 140 AFTLGVKQMICCCNKMDATTPKYSKSRFDEIVKEVSSYLKKVGYNPDKIAF 190
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