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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918063
Clone id YMU001_000109_B11
Library
Length 536
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_B11.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
GCCGCAGGAATTTTTTTTTTTTTTTTTTTGTGTTGATGAAACAATCAACCACTTTATAAG
AAACACATTCCCACTTTTCTTGATCTGATGAGCCTTTCAACTCAATAGCTATTTACAATT
ACAAGGCTTTGGGTAAAAGAATTATTTGTCTGGATACGTTATTGACTCTGTAGCCCATGT
TGCGGCTATTTACAGCAAGCTACTTGGACAAGTTAACAGAATCTCTACGTGCACATAAAT
CCTCTGTAAAGCAAGCACGCACGTAAAAAATGCAGCATTCTCAGTGCTGTTCTCCAATGA
CTCTGCATTTATCTGCAGTTTCTTCAAGGAACTCGAACACCGAAGAACCATACTCAGGAT
TGTAATACAATGTGGGTCACCACGCGTCACTGCGACCGTAATCTCCTTCAATGAAGGCAA
GCTCACCTTTCGCATTGTGGAGGAGAGCTTGGCCCCTGCTTGCAAGCACTCAAAGAACTC
AGACCCTATATACATGGTTTTCAAGTTCTGCAAATGCCCGAAGAATTGGTCGATCT
■■Homology search results ■■ -
sp_hit_id Q9EV79
Definition sp|Q9EV79|6PGL_PSEPU 6-phosphogluconolactonase OS=Pseudomonas putida
Align length 54
Score (bit) 32.3
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918063|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_B11.
         (507 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9EV79|6PGL_PSEPU 6-phosphogluconolactonase OS=Pseudomonas pu...    32   1.3  
sp|O95342|ABCBB_HUMAN Bile salt export pump OS=Homo sapiens GN=A...    32   2.2  
sp|Q4G112|HSF5_HUMAN Heat shock factor protein 5 OS=Homo sapiens...    31   2.9  
sp|Q8CHB8|TTLL5_MOUSE Tubulin polyglutamylase TTLL5 OS=Mus muscu...    30   5.0  
sp|Q312G9|THIM_DESDG Hydroxyethylthiazole kinase OS=Desulfovibri...    30   8.4  

>sp|Q9EV79|6PGL_PSEPU 6-phosphogluconolactonase OS=Pseudomonas
           putida GN=pgl PE=3 SV=1
          Length = 242

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 23/54 (42%), Positives = 28/54 (51%)
 Frame = +1

Query: 346 GHHASLRP*SPSMKASSPFALWRRAWPLLASTQRTQTLYTWFSSSANARRIGRS 507
           GH ASL P SP+++A    A  RR  PLLA +   Q L    S  A+A  I  S
Sbjct: 151 GHTASLFPASPNLEAGLDLASTRRCLPLLAPSVPHQRLSMTRSLLASAAFIALS 204


>sp|O95342|ABCBB_HUMAN Bile salt export pump OS=Homo sapiens
           GN=ABCB11 PE=1 SV=1
          Length = 1321

 Score = 31.6 bits (70), Expect = 2.2
 Identities = 18/82 (21%), Positives = 34/82 (41%)
 Frame = +3

Query: 177 GQVNRISTCT*ILCKASTHVKNAAFSVLFSNDSAFICSFFKELEHRRTILRIVIQCGSPR 356
           GQ  R++    ++      + + A S L +   A +     +++H  TI+ +  +  + R
Sbjct: 562 GQKQRVAIARALIRNPKILLLDMATSALDNESEAMVQEVLSKIQHGHTIISVAHRLSTVR 621

Query: 357 VTATVISFNEGKLTFRIVEESL 422
              T+I F  G    R   E L
Sbjct: 622 AADTIIGFEHGTAVERGTHEEL 643


>sp|Q4G112|HSF5_HUMAN Heat shock factor protein 5 OS=Homo sapiens
           GN=HSF5 PE=2 SV=1
          Length = 596

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 21/68 (30%), Positives = 31/68 (45%)
 Frame = +1

Query: 253 QCCSPMTLHLSAVSSRNSNTEEPYSGL*YNVGHHASLRP*SPSMKASSPFALWRRAWPLL 432
           QCCSP   H+ A+SS  + T   Y+   Y           +PSM++S P       WP  
Sbjct: 312 QCCSPT--HMDALSSCVTPTASSYAHCNYFQ---------NPSMQSSYPVEFLPSNWPCS 360

Query: 433 ASTQRTQT 456
            + + T+T
Sbjct: 361 TTDENTKT 368


>sp|Q8CHB8|TTLL5_MOUSE Tubulin polyglutamylase TTLL5 OS=Mus musculus
            GN=Ttll5 PE=2 SV=3
          Length = 1328

 Score = 30.4 bits (67), Expect = 5.0
 Identities = 25/80 (31%), Positives = 37/80 (46%)
 Frame = +1

Query: 145  PMLRLFTASYLDKLTESLRAHKSSVKQART*KMQHSQCCSPMTLHLSAVSSRNSNTEEPY 324
            P  +  T  + DKL+   R   SS K+A+      S  CSP  + L  + S + ++    
Sbjct: 865  PKQQQATEIHADKLS---RFTTSSGKEAKLVYTNCSSFCSPAAVLLQRLPSSHLSSVITT 921

Query: 325  SGL*YNVGHHASLRP*SPSM 384
            S L    GHHASL    P++
Sbjct: 922  SALSAGPGHHASLSQIPPAV 941


>sp|Q312G9|THIM_DESDG Hydroxyethylthiazole kinase OS=Desulfovibrio
           desulfuricans (strain G20) GN=thiM PE=3 SV=1
          Length = 266

 Score = 29.6 bits (65), Expect = 8.4
 Identities = 20/70 (28%), Positives = 34/70 (48%)
 Frame = -3

Query: 427 GAKLSSTMRKVSLPSLKEITVAVTRGDPHCITILSMVLRCSSSLKKLQINAESLENSTEN 248
           GA  SS     SL  L+E+ ++V RG+   I  LS     +  +  +   A++ + + E 
Sbjct: 98  GAGASSLRTWTSLDLLRELNISVLRGNASEILALSGAGSRTKGVDSIHQAADAADAAREL 157

Query: 247 AAFFTCVLAL 218
           A  F CV+ +
Sbjct: 158 AGKFGCVVVV 167
tr_hit_id A9SBZ0
Definition tr|A9SBZ0|A9SBZ0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 111
Score (bit) 89.4
E-value 9.0e-17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918063|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_B11.
         (507 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SBZ0|A9SBZ0_PHYPA Predicted protein OS=Physcomitrella paten...    89   9e-17
tr|A9TAN2|A9TAN2_PHYPA Predicted protein OS=Physcomitrella paten...    62   2e-08
tr|B3K9F4|B3K9F4_9BACI Putative uncharacterized protein OS=Geoba...    33   2.5  
tr|Q8EXU0|Q8EXU0_LEPIN Adenylate cyclase OS=Leptospira interroga...    34   4.6  
tr|B6BSJ3|B6BSJ3_9RICK GMP synthetase OS=Candidatus Pelagibacter...    34   4.6  
tr|Q2QP17|Q2QP17_ORYSJ Putative uncharacterized protein OS=Oryza...    33   6.0  
tr|A3CI70|A3CI70_ORYSJ Putative uncharacterized protein OS=Oryza...    33   6.0  
tr|B0DFA9|B0DFA9_LACBS Predicted protein OS=Laccaria bicolor (st...    33   6.0  
tr|Q4E4A6|Q4E4A6_TRYCR Putative uncharacterized protein OS=Trypa...    33   7.8  

>tr|A9SBZ0|A9SBZ0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_164031 PE=4 SV=1
          Length = 436

 Score = 89.4 bits (220), Expect = 9e-17
 Identities = 46/111 (41%), Positives = 75/111 (67%), Gaps = 3/111 (2%)
 Frame = -3

Query: 487 HLQNLKTMYIGSEFFECLQ-AGAKLSSTMRK--VSLPSLKEITVAVTRGDPHCITILSMV 317
           HLQ L +++IG++FFECLQ AG   ++ MR   ++LP L+ I V +  G+  CI++++ +
Sbjct: 326 HLQELVSIHIGADFFECLQTAGGAGAAFMRMHAMTLPRLENIVVVIGCGNNDCISVIATL 385

Query: 316 LRCSSSLKKLQINAESLENSTENAAFFTCVLALQRIYVHVEILLTCPSSLL 164
           L+C+ +L+ L+I+A  L  S +N  FFT +L LQR Y  V++ L CP +L+
Sbjct: 386 LKCAPALQTLRIDAGQLRKSMDNVMFFTNLLGLQRNYPQVKVSLVCPQTLV 436


>tr|A9TAN2|A9TAN2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_168962 PE=4 SV=1
          Length = 537

 Score = 62.0 bits (149), Expect = 2e-08
 Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 39/138 (28%)
 Frame = -3

Query: 487 HLQNLKTMYIGSEFFE------------------------------------CLQ-AGAK 419
           HLQ L +++IG++FFE                                    CLQ AG  
Sbjct: 327 HLQELVSIHIGADFFEVCSEHYLHTHYRSCRFSFWRRKKSCIVVSEGVGCALCLQTAGGA 386

Query: 418 LSSTMRK--VSLPSLKEITVAVTRGDPHCITILSMVLRCSSSLKKLQINAESLENSTENA 245
            ++ MR   + LP L+ I V ++ G+ +CI++L  +L+C+ +L+ L+I+AE+L  S +N 
Sbjct: 387 GAAFMRMHAMVLPRLENIMVVISCGNNNCISVLVSLLKCAPALRILRIDAENLRKSMDNV 446

Query: 244 AFFTCVLALQRIYVHVEI 191
            FF+ +L LQR Y  + +
Sbjct: 447 MFFSNLLGLQRDYPQITV 464


>tr|B3K9F4|B3K9F4_9BACI Putative uncharacterized protein
           OS=Geobacillus sp. Y412MC10 GN=GYMC10DRAFT_2448 PE=4
           SV=1
          Length = 752

 Score = 32.7 bits (73), Expect(2) = 2.5
 Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -2

Query: 425 GQAL-LHNAKGELAFIEGDYGRSDAW*PTLYYNPE 324
           G++L LH+ KGE+A I+ D  R D W PT Y + E
Sbjct: 85  GESLRLHSVKGEMALIKSD-SRGDLWLPTWYVSKE 118



 Score = 20.8 bits (42), Expect(2) = 2.5
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 487 HLQNLKTMYIGSE 449
           HL+NLK  Y G++
Sbjct: 72  HLRNLKASYYGAD 84


>tr|Q8EXU0|Q8EXU0_LEPIN Adenylate cyclase OS=Leptospira interrogans
           GN=cyaA18 PE=4 SV=1
          Length = 721

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 21/66 (31%), Positives = 34/66 (51%)
 Frame = +3

Query: 258 LFSNDSAFICSFFKELEHRRTILRIVIQCGSPRVTATVISFNEGKLTFRIVEESLAPACK 437
           +F ND +       ++ H+  ILR  I+     V ++++   E  LTFR++ +  APA  
Sbjct: 114 IFLNDHSLAQEIHLDISHKEMILRRTIRSFRLPVDSSLLRSGENLLTFRLIGD--APASF 171

Query: 438 HSKNSD 455
            SKN D
Sbjct: 172 LSKNVD 177


>tr|B6BSJ3|B6BSJ3_9RICK GMP synthetase OS=Candidatus Pelagibacter
           sp. HTCC7211 GN=guaA PE=4 SV=1
          Length = 520

 Score = 33.9 bits (76), Expect = 4.6
 Identities = 30/106 (28%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
 Frame = +3

Query: 219 KASTHVKNAAFSVLFSNDSAFICSFFKELEHRRTILRIVIQCGS-PRVTATVISFNEGKL 395
           K S H +    ++   N+S    +FFK+   ++  +    Q    PR    V S    K 
Sbjct: 101 KQSKHREFGLANIYKKNNSLLTSNFFKKSNTKKVWMSHADQVSKIPRNFRAVASSTNSK- 159

Query: 396 TFRIVEESLA--------PACKHSKNSDPIY--MVFKFCKCPKNWS 503
            F IVE+ +         P   H++N   I    VF  CK  KNWS
Sbjct: 160 -FAIVEDRIKKFYGVQFHPEVTHTENGKKIISNFVFLICKIKKNWS 204


>tr|Q2QP17|Q2QP17_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=LOC_Os12g36000 PE=4 SV=1
          Length = 521

 Score = 33.5 bits (75), Expect = 6.0
 Identities = 13/41 (31%), Positives = 27/41 (65%)
 Frame = -3

Query: 403 RKVSLPSLKEITVAVTRGDPHCITILSMVLRCSSSLKKLQI 281
           + +SL  LKE+ +   RG  H + +L ++LRC++ L+++ +
Sbjct: 436 QSISLTDLKEVEIRGFRGQNHEVDLLKVLLRCATVLERVTV 476


>tr|A3CI70|A3CI70_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_034992 PE=4 SV=1
          Length = 317

 Score = 33.5 bits (75), Expect = 6.0
 Identities = 13/41 (31%), Positives = 27/41 (65%)
 Frame = -3

Query: 403 RKVSLPSLKEITVAVTRGDPHCITILSMVLRCSSSLKKLQI 281
           + +SL  LKE+ +   RG  H + +L ++LRC++ L+++ +
Sbjct: 232 QSISLTDLKEVEIRGFRGQNHEVDLLKVLLRCATVLERVTV 272


>tr|B0DFA9|B0DFA9_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_328568 PE=4 SV=1
          Length = 775

 Score = 33.5 bits (75), Expect = 6.0
 Identities = 21/58 (36%), Positives = 31/58 (53%)
 Frame = -3

Query: 484 LQNLKTMYIGSEFFECLQAGAKLSSTMRKVSLPSLKEITVAVTRGDPHCITILSMVLR 311
           LQNLK + IG  +         LSS +  +SLP L+ +T+ V   DP   TI +++ R
Sbjct: 456 LQNLKKLNIGGHYL--------LSSVVDALSLPMLQNLTIDVEARDPIEDTISALITR 505


>tr|Q4E4A6|Q4E4A6_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053510187.448 PE=4 SV=1
          Length = 1482

 Score = 33.1 bits (74), Expect = 7.8
 Identities = 24/52 (46%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
 Frame = -3

Query: 412 STMRKVSLPSLKEIT----VAVTRGDPHCITILSMVLRCSSSLKKLQINAES 269
           + +R++   SLK I     VA+  GD H  T    VLRC S L KLQI AES
Sbjct: 699 TNLREIEYKSLKSIIALTRVALEEGD-HLETSWYEVLRCISLLSKLQILAES 749