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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918069
Clone id YMU001_000109_C05
Library
Length 484
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_C05.
Accession
Tissue type prothallium
Developmental stage -
Contig ID -
Sequence 
CCGCTCATATAGAATTCCATTGGTTTATTTTCTTTGCATGTGTGCTTATTCCTCAAGCTC
AACCTGTTATCTGTCTACAAGAAGTAAAATCTAGAACATGTCATGCCCTTGCTCCTTATG
GACATCATGCATTCTCAGACGATCATTAACCACATGAAGCCTGCGCATTTTCAAATCCAA
CTCATCTCTGTCTAGTCCTGTCATATCAATGCAAAGGGAAGTTGGTAAAGAATTTGCAAA
TCCAGCAGCTTGCTCAACTTCAGGTGCAGTTAGGCTGCAATCCCATCAGCACAAGCAACC
AAAAAACTCCATGGGTCACATCCTCCAAGCAGAATGGTCATATCACTGCTCAGTACTTCC
TCAACGATCCGATCAACAGTAACATAACCCTCCATCACAATTTTGTAGACCATTAGAACT
CTTCAAGAAGACCTGTTCCGCCATACGAATTCCCAGCAGCATCAGCATATCCTTCACACT
ATGG
■■Homology search results ■■ -
sp_hit_id Q8NEV4
Definition sp|Q8NEV4|MYO3A_HUMAN Myosin IIIA OS=Homo sapiens
Align length 54
Score (bit) 32.3
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918069|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_C05.
         (484 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NEV4|MYO3A_HUMAN Myosin IIIA OS=Homo sapiens GN=MYO3A PE=1 ...    32   1.2  
sp|O92532|POLG_HCVVP Genome polyprotein OS=Hepatitis C virus gen...    29   9.8  
sp|Q9WUB5|NCOR1_RAT Nuclear receptor corepressor 1 (Fragment) OS...    29   9.8  
sp|Q60974|NCOR1_MOUSE Nuclear receptor corepressor 1 OS=Mus musc...    29   9.8  
sp|Q61315|APC_MOUSE Adenomatous polyposis coli protein OS=Mus mu...    29   9.8  

>sp|Q8NEV4|MYO3A_HUMAN Myosin IIIA OS=Homo sapiens GN=MYO3A PE=1 SV=2
          Length = 1616

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = +2

Query: 275  LQSHQHKQPKNSMGHILQAEWSYHCSVLPQRSDQQ*HNPPSQFCRPLELFKKTC 436
            +Q  + +  K+S G +L  E  Y+   LP RS  + H+P  +  RP +  +  C
Sbjct: 1518 IQEEKRRPRKDSQGKLLDLEDFYYKEFLPSRSGPKEHSPSLRERRPQQELQNQC 1571


>sp|O92532|POLG_HCVVP Genome polyprotein OS=Hepatitis C virus genotype
            6h (isolate VN004) PE=3 SV=3
          Length = 3015

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
 Frame = +1

Query: 202  HINAKGSW*RICKSS--SLLNFRCS*AAIPSAQATKKLHGSHPPSRM 336
            H+ A+ +  R+ + S  SL +   S  + PS +AT  +HG+HP + +
Sbjct: 2181 HVTAEAAARRLARGSPPSLASSSASQLSAPSLKATCTMHGAHPDAEL 2227


>sp|Q9WUB5|NCOR1_RAT Nuclear receptor corepressor 1 (Fragment)
           OS=Rattus norvegicus GN=Ncor1 PE=2 SV=1
          Length = 533

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 173 KSNSSLSSPVISMQREVGKEFANPAACSTSGAVRLQSHQHKQPKNSMG 316
           K NSS          + G E  N  A +TSGAV  +SH    P +++G
Sbjct: 309 KLNSSGGGDSDMAAAQPGTEIFNLPAVTTSGAVSSRSHSFADPASNLG 356


>sp|Q60974|NCOR1_MOUSE Nuclear receptor corepressor 1 OS=Mus musculus
            GN=Ncor1 PE=1 SV=1
          Length = 2453

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 17/48 (35%), Positives = 23/48 (47%)
 Frame = +2

Query: 173  KSNSSLSSPVISMQREVGKEFANPAACSTSGAVRLQSHQHKQPKNSMG 316
            K NSS          + G E  N  A +TSGAV  +SH    P +++G
Sbjct: 2229 KLNSSGGGDSDMAAAQPGTEIFNLPAVTTSGAVSSRSHSFADPASNLG 2276


>sp|Q61315|APC_MOUSE Adenomatous polyposis coli protein OS=Mus
            musculus GN=Apc PE=1 SV=1
          Length = 2845

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 21/77 (27%), Positives = 34/77 (44%)
 Frame = +2

Query: 170  FKSNSSLSSPVISMQREVGKEFANPAACSTSGAVRLQSHQHKQPKNSMGHILQAEWSYHC 349
            F  NSSLSS  I  + ++ +E  + A        RL+S   KQ    +G IL  + +   
Sbjct: 2020 FSRNSSLSSLSIDSEDDLLQECISSAMPKKKRPSRLKSESEKQSPRKVGGILAEDLTLDL 2079

Query: 350  SVLPQRSDQQ*HNPPSQ 400
              L +   +   +P S+
Sbjct: 2080 KDLQRPDSEHAFSPGSE 2096
tr_hit_id Q4UHR1
Definition tr|Q4UHR1|Q4UHR1_THEAN Amine oxidase (Flavin-containing) OS=Theileria annulata
Align length 67
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918069|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_C05.
         (484 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4UHR1|Q4UHR1_THEAN Amine oxidase (Flavin-containing) OS=Thei...    39   0.17 
tr|A6DSE1|A6DSE1_9BACT Putative uncharacterized protein OS=Lenti...    36   1.1  
tr|B8BFQ6|B8BFQ6_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.0  
tr|A7F3I7|A7F3I7_SCLS1 Putative uncharacterized protein OS=Scler...    33   9.2  

>tr|Q4UHR1|Q4UHR1_THEAN Amine oxidase (Flavin-containing) OS=Theileria
            annulata GN=TA06700 PE=4 SV=1
          Length = 2594

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
 Frame = -2

Query: 294  LC*WDCSLTAPEVEQAAGFA---NSLPTSLCIDMTGLDRDELDLKMRRLHVVNDRLRMHD 124
            +C  +CS T       + F+   N   T  C + TGLD+  LDL  +R+ +V +RL   +
Sbjct: 1900 VCDDNCSSTTSTTANCSSFSVSPNETTTIQCNEDTGLDKSSLDLYKKRIKLVYNRLTTLN 1959

Query: 123  VHKEQGH 103
            + K QG+
Sbjct: 1960 IEKFQGN 1966


>tr|A6DSE1|A6DSE1_9BACT Putative uncharacterized protein
           OS=Lentisphaera araneosa HTCC2155 GN=LNTAR_25495 PE=4
           SV=1
          Length = 893

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 14/65 (21%)
 Frame = +1

Query: 25  LFSLHVCLFL---------KLNLLSVYKK*NLEHVMPLLLMDIMH-----SQTIINHMKP 162
           LF ++ CLFL         KLNLL V +K  +E   P L   + H       TII+H++P
Sbjct: 60  LFFIYSCLFLVQSIKNSQVKLNLLYVARK--IEKARPELKSCLSHCLSIQQDTIISHLEP 117

Query: 163 AHFQI 177
           AH Q+
Sbjct: 118 AHLQL 122


>tr|B8BFQ6|B8BFQ6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_32738 PE=4 SV=1
          Length = 127

 Score = 33.1 bits (74), Expect = 7.0
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 285 ISTSNQKTPWVTSSKQNGHITAQYFLNDPINSNITLH 395
           I+ SN+K  ++ S  +NGH + +   N  INSN+ +H
Sbjct: 87  ITLSNEKDCFIWSLHKNGHFSVKSMYNTIINSNVRIH 123


>tr|A7F3I7|A7F3I7_SCLS1 Putative uncharacterized protein
           OS=Sclerotinia sclerotiorum (strain ATCC 18683 / 1980 /
           Ss-1) GN=SS1G_11833 PE=4 SV=1
          Length = 663

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 20/64 (31%), Positives = 30/64 (46%)
 Frame = +3

Query: 285 ISTSNQKTPWVTSSKQNGHITAQYFLNDPINSNITLHHNFVDH*NSSRRPVPPYEFPAAS 464
           +ST   +T   TS +    + + Y   DP+   +  HH++    NS   P+PP     AS
Sbjct: 202 MSTQQPQTTTRTSGQNYDPVRSNY---DPVRETLVSHHSYN---NSQGSPIPPQVTNRAS 255

Query: 465 AYPS 476
           A PS
Sbjct: 256 ASPS 259