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NBDC - LSDB Archive
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BP918072
Clone id YMU001_000109_C08
Library
Length 489
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_C08.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
ATGTAAACTGCCTGCGTATACCATGCATTCGCAGAAAATCTGAAAAATCATTGGAGAAGT
ACTCTCCCCCTCCATCTGACGTCAATGTCTTGATTTGCATATCTGTCTCCTTCTCAATCA
TGACTTTGAAGTTTTGAAAGTGACCAAACACTTCACTTTTGTTACGCATTAAGTAGACCC
ATACTTTCCTTGTATGGTCATCAATGAAAGAGACATAATACATGCAACCATGTATACTTG
CAGTATCGGTTGGACCCCAAACATCTGTGTGCACCACCTCAAGTGGATTTTTACATACAT
TGCGCTCATGTGGAAATGAGCCCTTTGACTGTTTTCCAAACTGGCATGCTGCACACACTT
TATGCATACCATCCACCTTGAATTTGGGCAAACCTTTTACAATCTGTTTTGATTGCATGC
TGCGCAATTTCTGCTCATTGACATGGCCAATGCGTTTGTGCCAAATGTCAACATCAGCCA
CCACACATG
■■Homology search results ■■ -
sp_hit_id P10978
Definition sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum
Align length 157
Score (bit) 134.0
E-value 3.0e-31
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918072|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_C08.
         (489 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from tra...   134   3e-31
sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster G...    89   1e-17
sp|O13527|YA11B_YEAST Transposon Ty1-A Gag-Pol polyprotein OS=Sa...    63   8e-10
sp|P0C2J1|YP14B_YEAST Transposon Ty1-PR3 Gag-Pol polyprotein OS=...    62   1e-09
sp|P0C2I9|YP12B_YEAST Transposon Ty1-PR1 Gag-Pol polyprotein OS=...    62   1e-09
sp|Q12414|YP11B_YEAST Transposon Ty1-PL Gag-Pol polyprotein OS=S...    62   1e-09
sp|Q92393|YO12B_YEAST Transposon Ty1-OR Gag-Pol polyprotein OS=S...    62   1e-09
sp|Q12273|YO11B_YEAST Transposon Ty1-OL Gag-Pol polyprotein OS=S...    62   1e-09
sp|Q99337|YN12B_YEAST Transposon Ty1-NL2 Gag-Pol polyprotein OS=...    62   1e-09
sp|Q12112|YN11B_YEAST Transposon Ty1-NL1 Gag-Pol polyprotein OS=...    62   1e-09
sp|Q04670|YM14B_YEAST Transposon Ty1-MR2 Gag-Pol polyprotein OS=...    62   1e-09
sp|Q04214|YM13B_YEAST Transposon Ty1-MR1 Gag-Pol polyprotein OS=...    62   1e-09
sp|Q03434|YM12B_YEAST Transposon Ty1-ML2 Gag-Pol polyprotein OS=...    62   1e-09
sp|Q04711|YM11B_YEAST Transposon Ty1-ML1 Gag-Pol polyprotein OS=...    62   1e-09
sp|P0C2I7|YL14B_YEAST Transposon Ty1-LR4 Gag-Pol polyprotein OS=...    62   1e-09
sp|P0C2I6|YL13B_YEAST Transposon Ty1-LR3 Gag-Pol polyprotein OS=...    62   1e-09
sp|Q12088|YL11B_YEAST Transposon Ty1-LR1 Gag-Pol polyprotein OS=...    62   1e-09
sp|P47100|YJ12B_YEAST Transposon Ty1-JR2 Gag-Pol polyprotein OS=...    62   1e-09
sp|P47098|YJ11B_YEAST Transposon Ty1-JR1 Gag-Pol polyprotein OS=...    62   1e-09
sp|O13535|YH11B_YEAST Transposon Ty1-H Gag-Pol polyprotein OS=Sa...    62   1e-09
sp|Q12316|YG13B_YEAST Transposon Ty1-GR3 Gag-Pol polyprotein OS=...    62   1e-09
sp|Q12269|YG12B_YEAST Transposon Ty1-GR2 Gag-Pol polyprotein OS=...    62   1e-09
sp|Q12141|YG11B_YEAST Transposon Ty1-GR1 Gag-Pol polyprotein OS=...    62   1e-09
sp|Q03619|YE12B_YEAST Transposon Ty1-ER2 Gag-Pol polyprotein OS=...    62   1e-09
sp|Q03612|YE11B_YEAST Transposon Ty1-ER1 Gag-Pol polyprotein OS=...    62   1e-09
sp|P0C2I3|YD15B_YEAST Transposon Ty1-DR6 Gag-Pol polyprotein OS=...    62   1e-09
sp|P0C2I2|YD14B_YEAST Transposon Ty1-DR5 Gag-Pol polyprotein OS=...    62   1e-09
sp|Q07793|YD13B_YEAST Transposon Ty1-DR4 Gag-Pol polyprotein OS=...    62   1e-09
sp|Q99231|YD12B_YEAST Transposon Ty1-DR3 Gag-Pol polyprotein OS=...    62   1e-09
sp|Q03855|YD11B_YEAST Transposon Ty1-DR1 Gag-Pol polyprotein OS=...    62   1e-09

>sp|P10978|POLX_TOBAC Retrovirus-related Pol polyprotein from
           transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
          Length = 1328

 Score =  134 bits (336), Expect = 3e-31
 Identities = 65/157 (41%), Positives = 98/157 (62%)
 Frame = -3

Query: 472 VDIWHKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKVCAACQFGKQSKGSFPHERNVC 293
           VD+WHKR+GH++E+ L+ +  K ++       V    K C  C FGKQ + SF       
Sbjct: 422 VDLWHKRMGHMSEKGLQILAKKSLISYAKGTTV----KPCDYCLFGKQHRVSFQTSSERK 477

Query: 292 KNPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSEVFGHFQNFKVMIE 113
            N L++V++DV GP +  S+ G  Y+V+FIDD +RK+WVY+++ K +VF  FQ F  ++E
Sbjct: 478 LNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVE 537

Query: 112 KETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
           +ET  ++K L SD GGEY S +F ++   HGIR + T
Sbjct: 538 RETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKT 574


>sp|P04146|COPIA_DROME Copia protein OS=Drosophila melanogaster
           GN=GIP PE=1 SV=3
          Length = 1409

 Score = 89.0 bits (219), Expect = 1e-17
 Identities = 50/158 (31%), Positives = 80/158 (50%), Gaps = 3/158 (1%)
 Frame = -3

Query: 466 IWHKRIGHVNEQKLRSMQSKQIVKGLPKFK-VDGMHKVCAACQFGKQSKGSFPH--ERNV 296
           +WH+R GH+++ KL  ++ K +         ++   ++C  C  GKQ++  F    ++  
Sbjct: 417 LWHERFGHISDGKLLEIKRKNMFSDQSLLNNLELSCEICEPCLNGKQARLPFKQLKDKTH 476

Query: 295 CKNPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSEVFGHFQNFKVMI 116
            K PL VVH+DV GP    ++    Y+V F+D  T     YL++ KS+VF  FQ+F    
Sbjct: 477 IKRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKS 536

Query: 115 EKETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
           E   ++++  L  D G EY SN+   F    GI    T
Sbjct: 537 EAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLT 574


>sp|O13527|YA11B_YEAST Transposon Ty1-A Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY1B-A PE=1 SV=2
          Length = 1755

 Score = 62.8 bits (151), Expect = 8e-10
 Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
 Frame = -3

Query: 460  HKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKV---CAACQFGKQSK-----GSFPHE 305
            H+ + H N Q +R       +    +  VD    +   C  C  GK +K     GS    
Sbjct: 599  HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 658

Query: 304  RNVCKNPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSE--VFGHFQN 131
            +N  + P + +HTD++GP          Y++SF D+ T+  WVY + ++ E  +   F  
Sbjct: 659  QNSYE-PFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKLRWVYPLHDRREDSILDVFTT 717

Query: 130  FKVMIEKETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
                I+ +    +  +  D G EY +     FL  +GI   +T
Sbjct: 718  ILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYT 760


>sp|P0C2J1|YP14B_YEAST Transposon Ty1-PR3 Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY1B-PR3 PE=2 SV=1
          Length = 1755

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
 Frame = -3

Query: 460  HKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKV---CAACQFGKQSK-----GSFPHE 305
            H+ + H N Q +R       +    +  VD    +   C  C  GK +K     GS    
Sbjct: 599  HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 658

Query: 304  RNVCKNPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSE--VFGHFQN 131
            +N  + P + +HTD++GP          Y++SF D+ T+  WVY + ++ E  +   F  
Sbjct: 659  QNSYE-PFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTT 717

Query: 130  FKVMIEKETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
                I+ +    +  +  D G EY +     FL  +GI   +T
Sbjct: 718  ILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYT 760


>sp|P0C2I9|YP12B_YEAST Transposon Ty1-PR1 Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY1B-PR1 PE=3 SV=1
          Length = 1755

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
 Frame = -3

Query: 460  HKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKV---CAACQFGKQSK-----GSFPHE 305
            H+ + H N Q +R       +    +  VD    +   C  C  GK +K     GS    
Sbjct: 599  HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 658

Query: 304  RNVCKNPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSE--VFGHFQN 131
            +N  + P + +HTD++GP          Y++SF D+ T+  WVY + ++ E  +   F  
Sbjct: 659  QNSYE-PFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTT 717

Query: 130  FKVMIEKETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
                I+ +    +  +  D G EY +     FL  +GI   +T
Sbjct: 718  ILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYT 760


>sp|Q12414|YP11B_YEAST Transposon Ty1-PL Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY1B-PL PE=2 SV=1
          Length = 1755

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
 Frame = -3

Query: 460  HKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKV---CAACQFGKQSK-----GSFPHE 305
            H+ + H N Q +R       +    +  VD    +   C  C  GK +K     GS    
Sbjct: 599  HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 658

Query: 304  RNVCKNPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSE--VFGHFQN 131
            +N  + P + +HTD++GP          Y++SF D+ T+  WVY + ++ E  +   F  
Sbjct: 659  QNSYE-PFQYLHTDIFGPVHNLPNSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTT 717

Query: 130  FKVMIEKETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
                I+ +    +  +  D G EY +     FL  +GI   +T
Sbjct: 718  ILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYT 760


>sp|Q92393|YO12B_YEAST Transposon Ty1-OR Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY1B-OR PE=1 SV=1
          Length = 1755

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
 Frame = -3

Query: 460  HKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKV---CAACQFGKQSK-----GSFPHE 305
            H+ + H N Q +R       +    +  VD    +   C  C  GK +K     GS    
Sbjct: 599  HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 658

Query: 304  RNVCKNPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSE--VFGHFQN 131
            +N  + P + +HTD++GP          Y++SF D+ T+  WVY + ++ E  +   F  
Sbjct: 659  QNSYE-PFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTT 717

Query: 130  FKVMIEKETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
                I+ +    +  +  D G EY +     FL  +GI   +T
Sbjct: 718  ILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYT 760


>sp|Q12273|YO11B_YEAST Transposon Ty1-OL Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY1B-OL PE=3 SV=1
          Length = 1755

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
 Frame = -3

Query: 460  HKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKV---CAACQFGKQSK-----GSFPHE 305
            H+ + H N Q +R       +    +  VD    +   C  C  GK +K     GS    
Sbjct: 599  HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 658

Query: 304  RNVCKNPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSE--VFGHFQN 131
            +N  + P + +HTD++GP          Y++SF D+ T+  WVY + ++ E  +   F  
Sbjct: 659  QNSYE-PFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTT 717

Query: 130  FKVMIEKETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
                I+ +    +  +  D G EY +     FL  +GI   +T
Sbjct: 718  ILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYT 760


>sp|Q99337|YN12B_YEAST Transposon Ty1-NL2 Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY1B-NL2 PE=1 SV=1
          Length = 1749

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
 Frame = -3

Query: 460  HKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKV---CAACQFGKQSK-----GSFPHE 305
            H+ + H N Q +R       +    +  VD    +   C  C  GK +K     GS    
Sbjct: 599  HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 658

Query: 304  RNVCKNPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSE--VFGHFQN 131
            +N  + P + +HTD++GP          Y++SF D+ T+  WVY + ++ E  +   F  
Sbjct: 659  QNSYE-PFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTT 717

Query: 130  FKVMIEKETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
                I+ +    +  +  D G EY +     FL  +GI   +T
Sbjct: 718  ILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYT 760


>sp|Q12112|YN11B_YEAST Transposon Ty1-NL1 Gag-Pol polyprotein
            OS=Saccharomyces cerevisiae GN=TY1B-NL1 PE=3 SV=1
          Length = 1755

 Score = 62.4 bits (150), Expect = 1e-09
 Identities = 41/163 (25%), Positives = 69/163 (42%), Gaps = 10/163 (6%)
 Frame = -3

Query: 460  HKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKV---CAACQFGKQSK-----GSFPHE 305
            H+ + H N Q +R       +    +  VD    +   C  C  GK +K     GS    
Sbjct: 599  HRMLAHANAQTIRYSLKNNTITYFNESDVDWSSAIDYQCPDCLIGKSTKHRHIKGSRLKY 658

Query: 304  RNVCKNPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSE--VFGHFQN 131
            +N  + P + +HTD++GP          Y++SF D+ T+  WVY + ++ E  +   F  
Sbjct: 659  QNSYE-PFQYLHTDIFGPVHNLPKSAPSYFISFTDETTKFRWVYPLHDRREDSILDVFTT 717

Query: 130  FKVMIEKETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
                I+ +    +  +  D G EY +     FL  +GI   +T
Sbjct: 718  ILAFIKNQFQASVLVIQMDRGSEYTNRTLHKFLEKNGITPCYT 760
tr_hit_id Q9LH44
Definition tr|Q9LH44|Q9LH44_ARATH Copia-like retrotransposable element OS=Arabidopsis thaliana
Align length 157
Score (bit) 153.0
E-value 5.0e-36
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918072|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_C08.
         (489 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LH44|Q9LH44_ARATH Copia-like retrotransposable element OS=A...   153   5e-36
tr|Q9SHL9|Q9SHL9_ARATH Putative retroelement pol polyprotein OS=...   147   2e-34
tr|A5BC72|A5BC72_VITVI Putative uncharacterized protein OS=Vitis...   145   8e-34
tr|A5B541|A5B541_VITVI Putative uncharacterized protein OS=Vitis...   145   1e-33
tr|Q9LPK1|Q9LPK1_ARATH F6N18.1 OS=Arabidopsis thaliana PE=4 SV=2      144   2e-33
tr|Q9FH39|Q9FH39_ARATH Copia-type polyprotein (Polyprotein) OS=A...   144   2e-33
tr|Q9C7Y1|Q9C7Y1_ARATH Copia-type polyprotein, putative; 28768-3...   144   2e-33
tr|A5ADX1|A5ADX1_VITVI Putative uncharacterized protein OS=Vitis...   144   2e-33
tr|A5BFU1|A5BFU1_VITVI Putative uncharacterized protein OS=Vitis...   144   2e-33
tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis...   143   4e-33
tr|A5AS37|A5AS37_VITVI Putative uncharacterized protein OS=Vitis...   143   4e-33
tr|A5CBM1|A5CBM1_VITVI Putative uncharacterized protein OS=Vitis...   143   5e-33
tr|Q9FWI2|Q9FWI2_ORYSJ Os10g0106900 protein OS=Oryza sativa subs...   142   8e-33
tr|Q2QLK1|Q2QLK1_ORYSJ Retrotransposon protein, putative, unclas...   142   8e-33
tr|Q01LI0|Q01LI0_ORYSA OSIGBa0134J07.9 protein OS=Oryza sativa G...   142   8e-33
tr|A5BHI5|A5BHI5_VITVI Putative uncharacterized protein OS=Vitis...   142   8e-33
tr|A7NW85|A7NW85_VITVI Chromosome chr5 scaffold_2, whole genome ...   142   1e-32
tr|A5AM64|A5AM64_VITVI Putative uncharacterized protein OS=Vitis...   141   1e-32
tr|A5B5N4|A5B5N4_VITVI Putative uncharacterized protein OS=Vitis...   141   2e-32
tr|A5BM25|A5BM25_VITVI Putative uncharacterized protein OS=Vitis...   140   2e-32
tr|A5BJQ3|A5BJQ3_VITVI Putative uncharacterized protein OS=Vitis...   140   3e-32
tr|Q9SXB2|Q9SXB2_ARATH T28P6.8 protein OS=Arabidopsis thaliana G...   139   5e-32
tr|Q9M2D1|Q9M2D1_ARATH Copia-type polyprotein OS=Arabidopsis tha...   139   5e-32
tr|Q9C536|Q9C536_ARATH Copia-type polyprotein, putative OS=Arabi...   139   5e-32
tr|Q9ZQE9|Q9ZQE9_ARATH Putative retroelement pol polyprotein OS=...   139   9e-32
tr|A5C9A6|A5C9A6_VITVI Putative uncharacterized protein OS=Vitis...   139   9e-32
tr|A5BE52|A5BE52_VITVI Putative uncharacterized protein OS=Vitis...   139   9e-32
tr|A5AHY1|A5AHY1_VITVI Putative uncharacterized protein OS=Vitis...   139   9e-32
tr|Q9M197|Q9M197_ARATH Copia-type reverse transcriptase-like pro...   138   1e-31
tr|A5B6M5|A5B6M5_VITVI Putative uncharacterized protein OS=Vitis...   138   1e-31

>tr|Q9LH44|Q9LH44_ARATH Copia-like retrotransposable element
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1499

 Score =  153 bits (386), Expect = 5e-36
 Identities = 73/157 (46%), Positives = 106/157 (67%), Gaps = 1/157 (0%)
 Frame = -3

Query: 469 DIWHKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKVCAACQFGKQSKGSFPHERNVCK 290
           D+WHKR GHVN  K+ +MQ+ +IV+ LPKF+V  +  +CAAC+ GKQS+ SFP +     
Sbjct: 455 DLWHKRFGHVNYDKIETMQTLKIVEKLPKFEV--IKGICAACEMGKQSRRSFPKKSQSNT 512

Query: 289 NP-LEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSEVFGHFQNFKVMIE 113
           N  LE++H+DV GP  T SI+G  Y+++FIDD +R  WVY ++NKSEV   F+ FK  +E
Sbjct: 513 NKTLELIHSDVCGPMQTESINGSRYFLTFIDDFSRMTWVYFLKNKSEVITKFKIFKPYVE 572

Query: 112 KETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
            +++ +IK L +DGGGE+ S +F    +  GI  + T
Sbjct: 573 NQSESRIKRLRTDGGGEFLSREFIKLCQESGIHHEIT 609


>tr|Q9SHL9|Q9SHL9_ARATH Putative retroelement pol polyprotein
           OS=Arabidopsis thaliana GN=At2g17490 PE=2 SV=1
          Length = 822

 Score =  147 bits (372), Expect = 2e-34
 Identities = 72/157 (45%), Positives = 100/157 (63%), Gaps = 1/157 (0%)
 Frame = -3

Query: 469 DIWHKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKVCAACQFGKQSKGSFPHERNV-C 293
           ++WHKR+GH     L+ +QSK++V GLPKF V+     C +C   K S+  FP E     
Sbjct: 158 ELWHKRLGHTGHSNLKILQSKEMVTGLPKFNVE--EGKCESCILSKHSRDPFPKESETRA 215

Query: 292 KNPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSEVFGHFQNFKVMIE 113
           K+ LE++H+DV GP   +SI+G  Y ++FIDD TR VWVY ++ KSEVF  F+ FK ++E
Sbjct: 216 KHKLELIHSDVCGPMQNSSINGSRYILTFIDDATRMVWVYFLKAKSEVFQTFKKFKNLVE 275

Query: 112 KETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
              + +IK L  D G EY S +FS+FL  +GI RQ T
Sbjct: 276 NNANCRIKKLRIDRGTEYLSKEFSEFLEGNGIERQLT 312


>tr|A5BC72|A5BC72_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_006839 PE=4 SV=1
          Length = 1211

 Score =  145 bits (367), Expect = 8e-34
 Identities = 70/159 (44%), Positives = 101/159 (63%), Gaps = 1/159 (0%)
 Frame = -3

Query: 475 DVDIWHKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKVCAACQFGKQSKGSFPHERNV 296
           D  +WH+R+GH++E+ ++ + SK  +  L     D    +C +C  GKQ K SF      
Sbjct: 350 DTSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFD----MCESCILGKQKKVSFLKTGRT 405

Query: 295 CK-NPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSEVFGHFQNFKVM 119
            K   LE+VHTD+WGP+  AS+ G  YY++FIDD +RKVWVY ++NKS+VF  F+ +KVM
Sbjct: 406 SKAEKLELVHTDLWGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKVM 465

Query: 118 IEKETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
           +E ET +++K L SD GGEY    FS++    GIR + T
Sbjct: 466 VETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKT 504


>tr|A5B541|A5B541_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_040876 PE=4 SV=1
          Length = 1379

 Score =  145 bits (366), Expect = 1e-33
 Identities = 70/159 (44%), Positives = 102/159 (64%), Gaps = 1/159 (0%)
 Frame = -3

Query: 475 DVDIWHKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKVCAACQFGKQSKGSFPHERNV 296
           D  +WH+R+GH++E+ ++ + SK  +  L     D    +C +C  GKQ K SF      
Sbjct: 17  DTSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFD----MCESCILGKQKKVSFLKTGRT 72

Query: 295 CKNP-LEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSEVFGHFQNFKVM 119
            K+  LE+VHTD+WGP+  AS+ G  YY++FIDD +RKVWVY ++NKS+VF  F+ +KVM
Sbjct: 73  PKSEKLELVHTDLWGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKVM 132

Query: 118 IEKETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
           +E ET +++K L SD GGEY    FS++    GIR + T
Sbjct: 133 VETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKT 171


>tr|Q9LPK1|Q9LPK1_ARATH F6N18.1 OS=Arabidopsis thaliana PE=4 SV=2
          Length = 1207

 Score =  144 bits (364), Expect = 2e-33
 Identities = 71/157 (45%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
 Frame = -3

Query: 469 DIWHKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKVCAACQFGKQSKGSFPHERN-VC 293
           ++WHKR GH+N Q LRS+  K++VKGLPKF +     VC  C  GKQ + S P E     
Sbjct: 338 NMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKS 397

Query: 292 KNPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSEVFGHFQNFKVMIE 113
              L++VHTD+ GP + AS  G  Y ++FIDD +RK W YL+  KSE F  F+ FK  +E
Sbjct: 398 TQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVE 457

Query: 112 KETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
           +E+  ++  L SD GGEY S +F ++ +  GI+RQ T
Sbjct: 458 RESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLT 494


>tr|Q9FH39|Q9FH39_ARATH Copia-type polyprotein (Polyprotein)
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 1334

 Score =  144 bits (364), Expect = 2e-33
 Identities = 71/157 (45%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
 Frame = -3

Query: 469 DIWHKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKVCAACQFGKQSKGSFPHERN-VC 293
           ++WHKR GH+N Q LRS+  K++VKGLPKF +     VC  C  GKQ + S P E     
Sbjct: 433 NMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKS 492

Query: 292 KNPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSEVFGHFQNFKVMIE 113
              L++VHTD+ GP + AS  G  Y ++FIDD +RK W YL+  KSE F  F+ FK  +E
Sbjct: 493 TQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVE 552

Query: 112 KETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
           +E+  ++  L SD GGEY S +F ++ +  GI+RQ T
Sbjct: 553 RESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLT 589


>tr|Q9C7Y1|Q9C7Y1_ARATH Copia-type polyprotein, putative;
           28768-32772 OS=Arabidopsis thaliana GN=T9G5.7 PE=4 SV=1
          Length = 1334

 Score =  144 bits (364), Expect = 2e-33
 Identities = 71/157 (45%), Positives = 98/157 (62%), Gaps = 1/157 (0%)
 Frame = -3

Query: 469 DIWHKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKVCAACQFGKQSKGSFPHERN-VC 293
           ++WHKR GH+N Q LRS+  K++VKGLPKF +     VC  C  GKQ + S P E     
Sbjct: 433 NMWHKRFGHLNHQGLRSLAEKEMVKGLPKFDLGEEEAVCDICLKGKQIRESIPKESAWKS 492

Query: 292 KNPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSEVFGHFQNFKVMIE 113
              L++VHTD+ GP + AS  G  Y ++FIDD +RK W YL+  KSE F  F+ FK  +E
Sbjct: 493 TQVLQLVHTDICGPINPASTSGKRYILNFIDDFSRKCWTYLLSEKSETFQFFKEFKAEVE 552

Query: 112 KETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
           +E+  ++  L SD GGEY S +F ++ +  GI+RQ T
Sbjct: 553 RESGKKLVCLRSDRGGEYNSREFDEYCKEFGIKRQLT 589


>tr|A5ADX1|A5ADX1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_009113 PE=4 SV=1
          Length = 1141

 Score =  144 bits (364), Expect = 2e-33
 Identities = 69/159 (43%), Positives = 100/159 (62%), Gaps = 1/159 (0%)
 Frame = -3

Query: 475 DVDIWHKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKVCAACQFGKQSKGSFPHERNV 296
           D  +WH+R+GH++E+ ++ +QSK  +  L     D    +C +C  GKQ K SF      
Sbjct: 346 DTSLWHRRLGHMSEKGMKMLQSKGKLPELKSIDFD----MCESCILGKQKKVSFLKTSRT 401

Query: 295 CK-NPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSEVFGHFQNFKVM 119
            K   L +VHTD+WGP+  AS+ G  YY++FIDD +RKVWVY ++NKS+VF  F+ +K M
Sbjct: 402 PKXEKLXLVHTDLWGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFETFKKWKAM 461

Query: 118 IEKETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
           +E ET +++K L SD GGEY    FS++    GIR + T
Sbjct: 462 VETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKT 500


>tr|A5BFU1|A5BFU1_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_022356 PE=4 SV=1
          Length = 1299

 Score =  144 bits (363), Expect = 2e-33
 Identities = 69/159 (43%), Positives = 100/159 (62%), Gaps = 1/159 (0%)
 Frame = -3

Query: 475 DVDIWHKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKVCAACQFGKQSKGSFPHERNV 296
           D  +WH+R+GH++E+ ++ + SK  +  L     D    +C +C  GKQ K SF      
Sbjct: 411 DTSLWHRRLGHMSEKWMKMLLSKGKLPELKSIDFD----MCESCILGKQKKASFLKTGRT 466

Query: 295 CK-NPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSEVFGHFQNFKVM 119
            K   LE+VHTD+WGP+  AS+ G  YY++FIDD +RKVWVY ++NKS+VF  F+ +K M
Sbjct: 467 PKAEKLELVHTDLWGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKAM 526

Query: 118 IEKETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
           +E ET +++K L SD GGEY    FS++    GIR + T
Sbjct: 527 VETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKT 565


>tr|A5C844|A5C844_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_044399 PE=4 SV=1
          Length = 1264

 Score =  143 bits (361), Expect = 4e-33
 Identities = 69/159 (43%), Positives = 100/159 (62%), Gaps = 1/159 (0%)
 Frame = -3

Query: 475 DVDIWHKRIGHVNEQKLRSMQSKQIVKGLPKFKVDGMHKVCAACQFGKQSKGSFPHERNV 296
           D  +WH+R+GH++E+ ++ + SK  +  L     D    +C +C  GKQ K SF      
Sbjct: 411 DTSLWHRRLGHMSEKGMKMLLSKGKLPELKSIDFD----MCESCILGKQKKVSFLKTGRT 466

Query: 295 CK-NPLEVVHTDVWGPTDTASIHGCMYYVSFIDDHTRKVWVYLMRNKSEVFGHFQNFKVM 119
            K   LE+VHTD+WGP+  AS+ G  YY++FIDD +RKVWVY ++NKS+VF  F+ +K M
Sbjct: 467 PKAEKLELVHTDLWGPSPVASLGGSRYYITFIDDSSRKVWVYFLKNKSDVFVTFKKWKAM 526

Query: 118 IEKETDMQIKTLTSDGGGEYFSNDFSDFLRMHGIRRQFT 2
           +E ET +++K L SD GGEY    FS++    GIR + T
Sbjct: 527 VETETGLKVKCLRSDNGGEYIDGGFSEYCAAQGIRMEKT 565