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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918082
Clone id YMU001_000109_D06
Library
Length 384
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_D06.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
GCCAACGTTGCTCATACAGAGCATATAATTTACATAATCCTATTCAATTGGGATGAACTA
CGGTAGGGTCATACCGGCCATTTTCTGACCAGTTTGACAAGTTAAAGTGCAATGAGATGT
ACCCTCATGTAAGCACCCATGCACTTCTCTTTGGGTAACTCACCTACCCTAACAAAGCAT
ACAACAGATATCTATAATGCATGAAACACATATGTACAGCACATAGATTGTGTCTTCCAG
AGAAACAAATGCTCCACCACTGGGAAATGCGACATATTAAGCCTAGATGCCATCTGTGCT
ACTTAATAATATGTACATCGCGGATCAAAGAACAGCTTCTGCCCGAGCCTTAAGACACAG
TATCGGTGCACACAATAATAGGGG
■■Homology search results ■■ -
sp_hit_id Q95JR6
Definition sp|Q95JR6|CT152_MACFA Uncharacterized protein C20orf152 homolog OS=Macaca fascicularis
Align length 20
Score (bit) 32.0
E-value 0.97
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918082|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_D06.
         (384 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q95JR6|CT152_MACFA Uncharacterized protein C20orf152 homolog ...    32   0.97 
sp|Q96M20|CT152_HUMAN Uncharacterized protein C20orf152 OS=Homo ...    31   1.7  
sp|Q9IA11|HXD5_HETFR Homeobox protein Hox-D5 OS=Heterodontus fra...    30   2.8  
sp|P18865|HXC4_RAT Homeobox protein Hox-C4 (Fragment) OS=Rattus ...    30   2.8  
sp|Q08624|HXC4_MOUSE Homeobox protein Hox-C4 OS=Mus musculus GN=...    30   2.8  
sp|P09017|HXC4_HUMAN Homeobox protein Hox-C4 OS=Homo sapiens GN=...    30   2.8  
sp|P18864|HXB7_RAT Homeobox protein Hox-B7 OS=Rattus norvegicus ...    30   2.8  
sp|P09024|HXB7_MOUSE Homeobox protein Hox-B7 OS=Mus musculus GN=...    30   2.8  
sp|P09629|HXB7_HUMAN Homeobox protein Hox-B7 OS=Homo sapiens GN=...    30   2.8  
sp|A1YFA5|HXB7_GORGO Homeobox protein Hox-B7 OS=Gorilla gorilla ...    30   2.8  
sp|Q9TT89|HXB7_BOVIN Homeobox protein Hox-B7 OS=Bos taurus GN=HO...    30   2.8  
sp|P09023|HXB6_MOUSE Homeobox protein Hox-B6 OS=Mus musculus GN=...    30   2.8  
sp|P17509|HXB6_HUMAN Homeobox protein Hox-B6 OS=Homo sapiens GN=...    30   2.8  
sp|P15860|HM90_APIME Homeobox protein H90 (Fragment) OS=Apis mel...    30   2.8  
sp|P10284|HXB4_MOUSE Homeobox protein Hox-B4 OS=Mus musculus GN=...    30   3.7  
sp|P17483|HXB4_HUMAN Homeobox protein Hox-B4 OS=Homo sapiens GN=...    30   3.7  
sp|P14840|HXB4_CHICK Homeobox protein Hox-B4 OS=Gallus gallus GN...    30   3.7  
sp|Q08DG5|HXB4_BOVIN Homeobox protein Hox-B4 OS=Bos taurus GN=HO...    30   3.7  
sp|O13074|HXB4A_FUGRU Homeobox protein Hox-B4a OS=Fugu rubripes ...    30   3.7  
sp|P22574|HXB4A_DANRE Homeobox protein Hox-B4a OS=Danio rerio GN...    30   3.7  
sp|P09077|SCR_DROME Homeotic protein Sex combs reduced OS=Drosop...    29   8.2  
sp|P15859|SCR_APIME Homeobox protein H55 (Fragment) OS=Apis mell...    29   8.2  
sp|A1YFD8|HXD4_SAGLB Homeobox protein Hox-D4 OS=Saguinus labiatu...    29   8.2  
sp|A2T6X6|HXD4_PANTR Homeobox protein Hox-D4 OS=Pan troglodytes ...    29   8.2  
sp|A1YFY3|HXD4_PANPA Homeobox protein Hox-D4 OS=Pan paniscus GN=...    29   8.2  
sp|P10628|HXD4_MOUSE Homeobox protein Hox-D4 OS=Mus musculus GN=...    29   8.2  
sp|A2D5I1|HXD4_LAGLA Homeobox protein Hox-D4 OS=Lagothrix lagotr...    29   8.2  
sp|P09016|HXD4_HUMAN Homeobox protein Hox-D4 OS=Homo sapiens GN=...    29   8.2  
sp|A1YER7|HXD4_GORGO Homeobox protein Hox-D4 OS=Gorilla gorilla ...    29   8.2  
sp|P17278|HXD4_CHICK Homeobox protein Hox-D4 OS=Gallus gallus GN...    29   8.2  

>sp|Q95JR6|CT152_MACFA Uncharacterized protein C20orf152 homolog
           OS=Macaca fascicularis GN=QtsA-11192 PE=2 SV=1
          Length = 585

 Score = 32.0 bits (71), Expect = 0.97
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = -2

Query: 170 RVGELPKEKCMGAYMRVHLI 111
           + GELPKE  +GAYM+VH +
Sbjct: 398 KFGELPKEAAVGAYMKVHTV 417


>sp|Q96M20|CT152_HUMAN Uncharacterized protein C20orf152 OS=Homo
           sapiens GN=C20orf152 PE=2 SV=2
          Length = 576

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 11/21 (52%), Positives = 17/21 (80%)
 Frame = -2

Query: 173 VRVGELPKEKCMGAYMRVHLI 111
           ++ GELPKE  +GAY++VH +
Sbjct: 397 IKPGELPKEAAVGAYVKVHTV 417


>sp|Q9IA11|HXD5_HETFR Homeobox protein Hox-D5 OS=Heterodontus
           francisci GN=HOXD5 PE=3 SV=1
          Length = 252

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 180 YNRYL*CMKHICTAHRLCLPEKQMLHHWEMRHIK 281
           YNRYL   + I  AH LCL E+Q+   ++ R +K
Sbjct: 198 YNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 231


>sp|P18865|HXC4_RAT Homeobox protein Hox-C4 (Fragment) OS=Rattus
           norvegicus GN=Hoxc4 PE=2 SV=1
          Length = 76

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 180 YNRYL*CMKHICTAHRLCLPEKQMLHHWEMRHIK 281
           YNRYL   + I  AH LCL E+Q+   ++ R +K
Sbjct: 32  YNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMK 65


>sp|Q08624|HXC4_MOUSE Homeobox protein Hox-C4 OS=Mus musculus
           GN=Hoxc4 PE=2 SV=1
          Length = 264

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 180 YNRYL*CMKHICTAHRLCLPEKQMLHHWEMRHIK 281
           YNRYL   + I  AH LCL E+Q+   ++ R +K
Sbjct: 177 YNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMK 210


>sp|P09017|HXC4_HUMAN Homeobox protein Hox-C4 OS=Homo sapiens
           GN=HOXC4 PE=2 SV=1
          Length = 264

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 180 YNRYL*CMKHICTAHRLCLPEKQMLHHWEMRHIK 281
           YNRYL   + I  AH LCL E+Q+   ++ R +K
Sbjct: 177 YNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMK 210


>sp|P18864|HXB7_RAT Homeobox protein Hox-B7 OS=Rattus norvegicus
           GN=Hoxb7 PE=2 SV=2
          Length = 219

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 180 YNRYL*CMKHICTAHRLCLPEKQMLHHWEMRHIK 281
           YNRYL   + I  AH LCL E+Q+   ++ R +K
Sbjct: 158 YNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 191


>sp|P09024|HXB7_MOUSE Homeobox protein Hox-B7 OS=Mus musculus
           GN=Hoxb7 PE=1 SV=2
          Length = 217

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 180 YNRYL*CMKHICTAHRLCLPEKQMLHHWEMRHIK 281
           YNRYL   + I  AH LCL E+Q+   ++ R +K
Sbjct: 158 YNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMK 191


>sp|P09629|HXB7_HUMAN Homeobox protein Hox-B7 OS=Homo sapiens
           GN=HOXB7 PE=1 SV=2
          Length = 217

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 180 YNRYL*CMKHICTAHRLCLPEKQMLHHWEMRHIK 281
           YNRYL   + I  AH LCL E+Q+   ++ R +K
Sbjct: 158 YNRYLTRRRRIEIAHTLCLTERQIKIWFQNRRMK 191


>sp|A1YFA5|HXB7_GORGO Homeobox protein Hox-B7 OS=Gorilla gorilla
           gorilla GN=HOXB7 PE=3 SV=1
          Length = 217

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +3

Query: 180 YNRYL*CMKHICTAHRLCLPEKQMLHHWEMRHIK 281
           YNRYL   + I  AH LCL E+Q+   ++ R +K
Sbjct: 158 YNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMK 191
tr_hit_id Q03HC5
Definition tr|Q03HC5|Q03HC5_PEDPA Kef-type K+ transport system, predicted NAD-binding component OS=Pediococcus pentosaceus (strain ATCC 25745 / 183-1w)
Align length 74
Score (bit) 33.9
E-value 4.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918082|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_D06.
         (384 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q03HC5|Q03HC5_PEDPA Kef-type K+ transport system, predicted N...    34   4.2  

>tr|Q03HC5|Q03HC5_PEDPA Kef-type K+ transport system, predicted
           NAD-binding component OS=Pediococcus pentosaceus (strain
           ATCC 25745 / 183-1w) GN=PEPE_0300 PE=4 SV=1
          Length = 250

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = -3

Query: 343 GRSCSLIRDVHIIK*HRWHLGLICRISQWWS--ICFSGRHNLCAVHMCFMHYRYLLYALL 170
           GR   LIR  H++    W  GL  + S+     I  SG  NL  V M  +    LLY+++
Sbjct: 95  GRVFKLIRSHHLL----WRFGLDGKFSKTVHRFIYTSGFLNLFTVSMIILVLSSLLYSVV 150

Query: 169 G*VSYPKRSAWVLT 128
             +SYP    W +T
Sbjct: 151 EHISYPSALWWAIT 164