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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
BP918083
Clone id YMU001_000109_D07
Library
Length 504
Definition Adiantum capillus-veneris mRNA. clone: YMU001_000109_D07.
Accession
Tissue type prothallium
Developmental stage -
Contig ID
Sequence 
CACAAGTGAAGAGGTCATATTGCAATGCACATATGACCAAGTTCTACCCAAGGTTTACAG
CTTGCTTCTCAAAGTGCTAGGCTACTTGCAAATGAGAGAGACATCGCTCGAAGATAATGA
AGAGGGAGACTTATGGGAGATCACTTTGTCAGCATGTATGGGCTTTGTTGATCGATATCC
CTCCCTCAAGGATTCAATAAAGTCGTGTGGTCTCACTTCGTCAAATTTACTCATAAAGAG
ATTGTCAGAATGATCTCTCATCTTTTGTACAACAGCGGCTTTTGTGCCTAGAGAATCTTC
TACCAGATTTTGATGTTTTTCTGCCAGACTGGCAAAAACCCGCTCATACATGTACATGTA
CAGAGGACCCTATTCCTCGCCTTTCAAAACTGGGACCTTTCTTAGAGCCTGCGCAATCAA
AATGGGCAAATGGATGTCGCCTTTAAATATTCTGCACACATTGAACCTGTTCCTGGTTTT
ATAAATTATATGCTCCACCTCTAG
■■Homology search results ■■ -
sp_hit_id Q9RQG4
Definition sp|Q9RQG4|FSRB_ENTFA Protein fsrB OS=Enterococcus faecalis
Align length 62
Score (bit) 31.2
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918083|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_D07.
         (504 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9RQG4|FSRB_ENTFA Protein fsrB OS=Enterococcus faecalis GN=fs...    31   2.9  
sp|Q8Y7L0|TIG_LISMO Trigger factor OS=Listeria monocytogenes GN=...    30   4.9  
sp|Q720F5|TIG_LISMF Trigger factor OS=Listeria monocytogenes ser...    30   4.9  
sp|Q5HKP1|HIS4_STAEQ 1-(5-phosphoribosyl)-5-[(5-phosphoribosylam...    30   4.9  
sp|Q5VKN9|VGLG_WCBV Glycoprotein G OS=West Caucasian bat virus G...    30   6.4  
sp|Q4J904|SYR_SULAC Arginyl-tRNA synthetase OS=Sulfolobus acidoc...    30   6.5  
sp|Q8CQ93|HIS4_STAES 1-(5-phosphoribosyl)-5-[(5-phosphoribosylam...    30   6.5  
sp|A0AI70|TIG_LISW6 Trigger factor OS=Listeria welshimeri serova...    30   8.3  
sp|Q92C85|TIG_LISIN Trigger factor OS=Listeria innocua GN=tig PE...    30   8.3  
sp|Q9NVH0|EXDL2_HUMAN Exonuclease 3'-5' domain-like-containing p...    30   8.3  
sp|P33507|ATP6_ANOQU ATP synthase subunit a OS=Anopheles quadrim...    30   8.4  
sp|A7TR50|ATG9_VANPO Autophagy-related protein 9 OS=Vanderwaltoz...    30   8.4  

>sp|Q9RQG4|FSRB_ENTFA Protein fsrB OS=Enterococcus faecalis GN=fsrB
           PE=3 SV=2
          Length = 242

 Score = 31.2 bits (69), Expect = 2.9
 Identities = 18/62 (29%), Positives = 32/62 (51%)
 Frame = -1

Query: 420 LIAQALRKVPVLKGEE*GPLYMYMYERVFASLAEKHQNLVEDSLGTKAAVVQKMRDHSDN 241
           L+ Q L  +PV K    G ++M   +++  ++ EK    V D +GTK     ++  +S N
Sbjct: 169 LVIQGLMILPVTKNLIEGSVFMKFGKKIIKNVIEKRVAKVSDGVGTK----PRLNQNSPN 224

Query: 240 LF 235
           +F
Sbjct: 225 IF 226


>sp|Q8Y7L0|TIG_LISMO Trigger factor OS=Listeria monocytogenes GN=tig
           PE=3 SV=1
          Length = 427

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 8   EEVILQCTYDQVLPKVYSLLLKVLGY--LQMRETSLEDNEEGDLWEIT 145
           EE + Q   D +LP+VYS  +   G   +   + ++E  E+G+ W +T
Sbjct: 60  EEALFQDALDILLPEVYSAAIDEAGIDPVDTPQVNIESMEKGETWVLT 107


>sp|Q720F5|TIG_LISMF Trigger factor OS=Listeria monocytogenes
           serotype 4b (strain F2365) GN=tig PE=3 SV=1
          Length = 427

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 8   EEVILQCTYDQVLPKVYSLLLKVLGY--LQMRETSLEDNEEGDLWEIT 145
           EE + Q   D +LP+VYS  +   G   +   + ++E  E+G+ W +T
Sbjct: 60  EEALFQDALDILLPEVYSAAIDEAGIDPVDTPQVNIESMEKGETWVLT 107


>sp|Q5HKP1|HIS4_STAEQ
           1-(5-phosphoribosyl)-5-[(5-
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase OS=Staphylococcus
           epidermidis (strain ATCC 35984 / RP62A) GN=hisA PE=3
           SV=1
          Length = 234

 Score = 30.4 bits (67), Expect = 4.9
 Identities = 21/55 (38%), Positives = 30/55 (54%)
 Frame = -1

Query: 321 EKHQNLVEDSLGTKAAVVQKMRDHSDNLFMSKFDEVRPHDFIESLREGYRSTKPI 157
           EK +  VEDS+   +      R H  +L  +K  EV+  D+I SLR+   +TKPI
Sbjct: 27  EKMEKSVEDSIRFYSQFKCVKRIHIVDLIGAKAKEVKEFDYIRSLRK--LTTKPI 79


>sp|Q5VKN9|VGLG_WCBV Glycoprotein G OS=West Caucasian bat virus GN=G
           PE=1 SV=1
          Length = 525

 Score = 30.0 bits (66), Expect = 6.4
 Identities = 23/77 (29%), Positives = 36/77 (46%)
 Frame = +3

Query: 108 SKIMKRETYGRSLCQHVWALLIDIPPSRIQ*SRVVSLRQIYS*RDCQNDLSSFVQQRLLC 287
           ++I+  E     L +HV  L  +I P R      + LR   S  D + D+  FV   L  
Sbjct: 388 NQILIPEMQSSLLREHVDLLKANIVPFR----HPMLLRSFTS--DTEEDIVEFVNPHLQD 441

Query: 288 LENLLPDFDVFLPDWQK 338
            + L+ D D+ L DW++
Sbjct: 442 TQKLVSDMDLGLSDWKR 458


>sp|Q4J904|SYR_SULAC Arginyl-tRNA synthetase OS=Sulfolobus
           acidocaldarius GN=argS PE=3 SV=1
          Length = 618

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
 Frame = -1

Query: 369 GPLYMYMYERVFASLAEKHQNL------VEDSLGTKAAVVQKMRDHSDNLFMSKFDEVRP 208
           GP   Y Y R +  LA+    +      + D +G K  ++  +    +  F    DE+RP
Sbjct: 499 GPYLQYTYARAYNILAKNQDEIKLTDADLSDLIGDKRRLLLLIARFPET-FNKAIDELRP 557

Query: 207 HDFIESLR 184
            D I+ LR
Sbjct: 558 EDLIDFLR 565


>sp|Q8CQ93|HIS4_STAES
           1-(5-phosphoribosyl)-5-[(5-
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase OS=Staphylococcus
           epidermidis (strain ATCC 12228) GN=hisA PE=3 SV=1
          Length = 234

 Score = 30.0 bits (66), Expect = 6.5
 Identities = 21/55 (38%), Positives = 30/55 (54%)
 Frame = -1

Query: 321 EKHQNLVEDSLGTKAAVVQKMRDHSDNLFMSKFDEVRPHDFIESLREGYRSTKPI 157
           EK +  VEDS+   +      R H  +L  +K  EV+  D+I SLR+   +TKPI
Sbjct: 27  EKMEKSVEDSIRFYSQFKCVKRIHIVDLIGAKAKEVKEFDYIRSLRK--VTTKPI 79


>sp|A0AI70|TIG_LISW6 Trigger factor OS=Listeria welshimeri serovar
           6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=tig
           PE=3 SV=1
          Length = 427

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 8   EEVILQCTYDQVLPKVYSLLLKVLGY--LQMRETSLEDNEEGDLWEIT 145
           EE + Q   D +LP+VYS  +   G   +   + ++E  E+G+ W +T
Sbjct: 60  EEALYQDALDILLPEVYSQAIDEAGIDPVDTPQVNIESMEKGETWVLT 107


>sp|Q92C85|TIG_LISIN Trigger factor OS=Listeria innocua GN=tig PE=3
           SV=1
          Length = 427

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +2

Query: 8   EEVILQCTYDQVLPKVYSLLLKVLGY--LQMRETSLEDNEEGDLWEIT 145
           EE + Q   D +LP+VYS  +   G   +   + ++E  E+G+ W +T
Sbjct: 60  EEALYQDALDILLPEVYSQAIDEAGIDPVDTPQVNIESMEKGETWVLT 107


>sp|Q9NVH0|EXDL2_HUMAN Exonuclease 3'-5' domain-like-containing
           protein 2 OS=Homo sapiens GN=EXDL2 PE=1 SV=1
          Length = 496

 Score = 29.6 bits (65), Expect = 8.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 59  SLLLKVLGYLQMRETSLEDNEEGDLWEITLSACMGFVD 172
           +L L +LGY   R +  E N++   W   L  C G VD
Sbjct: 127 ALFLHLLGYPFSRNSPGEKNDDHSSWRKVLEKCQGVVD 164
tr_hit_id A9TFH4
Definition tr|A9TFH4|A9TFH4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 54
Score (bit) 43.1
E-value 0.007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BP918083|Adiantum capillus-veneris mRNA, clone:
YMU001_000109_D07.
         (504 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TFH4|A9TFH4_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.007
tr|A9SLJ1|A9SLJ1_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.007
tr|B8LKN0|B8LKN0_PICSI Putative uncharacterized protein OS=Picea...    39   0.14 
tr|Q7T2C5|Q7T2C5_DANRE Protein kinase C, beta 1, like OS=Danio r...    34   4.5  

>tr|A9TFH4|A9TFH4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_92084 PE=4 SV=1
          Length = 533

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 23/54 (42%), Positives = 31/54 (57%)
 Frame = +2

Query: 41  VLPKVYSLLLKVLGYLQMRETSLEDNEEGDLWEITLSACMGFVDRYPSLKDSIK 202
           VL  V++L+L  L   Q  E   E  EE DLW+I ++ C   + RYPS K+ IK
Sbjct: 442 VLHTVFALILMNLERCQKAERLEESAEEEDLWDIIVTGCSQCMHRYPSFKNMIK 495


>tr|A9SLJ1|A9SLJ1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165585 PE=4 SV=1
          Length = 746

 Score = 43.1 bits (100), Expect = 0.007
 Identities = 22/53 (41%), Positives = 30/53 (56%)
 Frame = +2

Query: 44  LPKVYSLLLKVLGYLQMRETSLEDNEEGDLWEITLSACMGFVDRYPSLKDSIK 202
           L  V+ L+L  L   Q  E   E  EE DLW+I ++ C  ++ RYPS K+ IK
Sbjct: 601 LHTVFKLILMNLERCQRAERLEEPAEEEDLWDIIVTGCSQYMQRYPSFKNMIK 653


>tr|B8LKN0|B8LKN0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 663

 Score = 38.9 bits (89), Expect = 0.14
 Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
 Frame = +2

Query: 2   TSEEVILQCTYDQV--LPKVYSLLLKVLGYLQMRETSLEDNEEGDLWEITLSACMGFVDR 175
           +SE+++ Q    Q   L K  +L+++ L   Q  E S    +E DL+++T++ C   + R
Sbjct: 559 SSEDLLSQIPEFQTECLSKASALIIQCLELCQQTEKSEAPADEQDLYDLTVAGCARLMAR 618

Query: 176 YPSLKDSIKS 205
           YPS++ +I++
Sbjct: 619 YPSIRRAIRT 628


>tr|Q7T2C5|Q7T2C5_DANRE Protein kinase C, beta 1, like OS=Danio
           rerio GN=prkcb1l PE=2 SV=1
          Length = 668

 Score = 33.9 bits (76), Expect = 4.5
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 475 QEQVQCVQNI*RRHPFAHFDCAGSKKGPSFE--RRGIGSSVHVHV*AGFC 332
           Q QV C     R H F HF C GS KGP+ +  R+     VH +    FC
Sbjct: 62  QCQVCCFVVHKRCHEFVHFSCPGSDKGPASDDPRKYHSFKVHTYTSPTFC 111